Wall clock time and date at job start Wed Apr 1 2020 00:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47422 * 2 1 4 4 C 1.53008 * 109.47343 * 120.00399 * 2 1 3 5 5 H 1.08999 * 109.47058 * 184.99597 * 4 2 1 6 6 C 1.52999 * 109.46675 * 65.00043 * 4 2 1 7 7 N 1.46510 * 109.46482 * 185.00168 * 6 4 2 8 8 C 1.34776 * 119.99685 * 179.97438 * 7 6 4 9 9 O 1.21286 * 120.00138 * 359.97438 * 8 7 6 10 10 C 1.50698 * 120.00053 * 180.02562 * 8 7 6 11 11 S 1.80993 * 109.47548 * 180.02562 * 10 8 7 12 12 C 1.76201 * 100.00262 * 179.97438 * 11 10 8 13 13 H 1.07991 * 119.99947 * 359.97438 * 12 11 10 14 14 C 1.38793 * 119.99951 * 179.97438 * 12 11 10 15 15 N 1.31633 * 120.00238 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00115 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47339 * 89.99822 * 16 14 12 18 18 H 1.48497 * 109.47215 * 210.00071 * 16 14 12 19 19 H 1.48505 * 109.46703 * 329.99825 * 16 14 12 20 20 N 1.46499 * 109.47014 * 304.99929 * 4 2 1 21 21 C 1.38569 * 119.99727 * 275.27523 * 20 4 2 22 22 C 1.39462 * 120.51548 * 359.44837 * 21 20 4 23 23 C 1.38476 * 118.31103 * 179.80725 * 22 21 20 24 24 F 1.35102 * 120.43264 * 180.22180 * 23 22 21 25 25 N 1.32787 * 119.13767 * 0.46210 * 23 22 21 26 26 C 1.31759 * 120.96101 * 359.75628 * 25 23 22 27 27 N 1.31762 * 121.86253 * 0.02562 * 26 25 23 28 28 H 1.09001 * 109.46900 * 299.99627 * 1 2 3 29 29 H 1.09000 * 109.47044 * 59.99995 * 1 2 3 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47218 * 239.99929 * 2 1 3 32 32 H 1.09001 * 109.46778 * 60.00299 * 3 2 1 33 33 H 1.08998 * 109.47035 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47136 * 300.00753 * 3 2 1 35 35 H 1.08998 * 109.47318 * 304.99262 * 6 4 2 36 36 H 1.08988 * 109.47710 * 65.00512 * 6 4 2 37 37 H 0.97003 * 120.00089 * 359.97438 * 7 6 4 38 38 H 1.09005 * 109.46850 * 300.00165 * 10 8 7 39 39 H 1.09002 * 109.47363 * 59.99949 * 10 8 7 40 40 H 0.96997 * 120.00031 * 180.02562 * 15 14 12 41 41 H 0.97001 * 119.99790 * 94.99446 * 20 4 2 42 42 H 1.07999 * 120.84761 * 359.97438 * 22 21 20 43 43 H 1.08000 * 119.06804 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 3.1264 -0.6445 1.2951 6 6 1.6353 -2.1956 1.1878 7 7 2.0185 -2.8595 2.4363 8 6 1.7588 -4.1707 2.6094 9 8 1.2075 -4.8008 1.7319 10 6 2.1524 -4.8536 3.8938 11 16 1.6738 -6.5975 3.8213 12 6 2.2365 -7.1354 5.4020 13 1 2.7131 -6.4356 6.0723 14 6 2.0672 -8.4585 5.7856 15 7 1.4857 -9.3114 4.9688 16 14 2.6631 -9.0285 7.4618 17 1 1.5746 -8.8601 8.4578 18 1 3.0501 -10.4603 7.3889 19 1 3.8384 -8.2183 7.8711 20 7 1.4559 -0.1038 2.4424 21 6 2.0480 1.0166 3.0030 22 6 3.2066 1.5583 2.4470 23 6 3.7576 2.6809 3.0418 24 9 4.8769 3.2436 2.5360 25 7 3.1743 3.1943 4.1185 26 6 2.0825 2.6540 4.6206 27 7 1.5233 1.5887 4.0834 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 0.5563 -2.2708 1.0527 36 1 2.1408 -2.6766 0.3506 37 1 2.4590 -2.3555 3.1383 38 1 3.2314 -4.7786 4.0293 39 1 1.6468 -4.3722 4.7310 40 1 1.3671 -10.2359 5.2371 41 1 0.6524 -0.4768 2.8376 42 1 3.6610 1.1153 1.5731 43 1 1.6337 3.0964 5.4976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105134557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:36 Heat of formation + Delta-G solvation = -48.995101 kcal Electronic energy + Delta-G solvation = -26991.117513 eV Core-core repulsion = 22918.638317 eV Total energy + Delta-G solvation = -4072.479196 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.127 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.19070 -42.11659 -40.77055 -39.36181 -35.65947 -35.25203 -34.59000 -33.39958 -32.33405 -31.16425 -28.88021 -28.22647 -27.64649 -25.53588 -24.59149 -23.98255 -21.85834 -20.87439 -19.96890 -19.73345 -19.07951 -17.86816 -17.48453 -17.45485 -17.25288 -16.88506 -16.80613 -16.48125 -16.32753 -15.99890 -15.74342 -15.41290 -14.98305 -14.91372 -14.75815 -14.59443 -14.39159 -13.99291 -13.88420 -13.25717 -13.17269 -13.06056 -12.90484 -12.89436 -12.69378 -12.59326 -12.02500 -11.92161 -11.76226 -11.70557 -11.41490 -11.15032 -10.98373 -10.77622 -10.50940 -10.28656 -10.15268 -9.29015 -8.66612 -8.35611 -6.13113 -0.15361 0.16626 1.26196 1.41670 1.46108 1.56315 1.59383 1.75833 2.23159 2.27918 2.39449 2.71370 2.98707 3.22834 3.30751 3.43428 3.60147 3.76100 3.80249 3.98953 4.05815 4.12510 4.17877 4.27976 4.36532 4.50462 4.57196 4.59207 4.63214 4.75206 4.81067 4.96337 5.00337 5.15030 5.21597 5.33274 5.38249 5.41261 5.41849 5.56399 6.01111 6.19015 6.36744 6.41969 7.06175 7.09238 7.20143 8.73461 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.013960 B = 0.002349 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.242025 B =11914.593398 C =13273.868703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.102 4.102 3 C -0.149 4.149 4 C 0.151 3.849 5 H 0.110 0.890 6 C 0.112 3.888 7 N -0.713 5.713 8 C 0.537 3.463 9 O -0.560 6.560 10 C -0.132 4.132 11 S -0.146 6.146 12 C -0.547 4.547 13 H 0.081 0.919 14 C 0.014 3.986 15 N -0.910 5.910 16 Si 0.996 3.004 17 H -0.268 1.268 18 H -0.277 1.277 19 H -0.259 1.259 20 N -0.688 5.688 21 C 0.463 3.537 22 C -0.308 4.308 23 C 0.361 3.639 24 F -0.109 7.109 25 N -0.615 5.615 26 C 0.372 3.628 27 N -0.596 5.596 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.103 0.897 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.412 0.588 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.271 0.729 41 H 0.415 0.585 42 H 0.178 0.822 43 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.631 27.340 -7.526 28.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.122 4.122 3 C -0.206 4.206 4 C 0.046 3.954 5 H 0.128 0.872 6 C -0.012 4.012 7 N -0.367 5.367 8 C 0.323 3.677 9 O -0.437 6.437 10 C -0.284 4.284 11 S 0.081 5.919 12 C -0.695 4.695 13 H 0.099 0.901 14 C -0.191 4.191 15 N -0.547 5.547 16 Si 0.818 3.182 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.183 1.183 20 N -0.319 5.319 21 C 0.218 3.782 22 C -0.337 4.337 23 C 0.204 3.796 24 F -0.088 7.088 25 N -0.341 5.341 26 C 0.084 3.916 27 N -0.321 5.321 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.121 0.879 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.249 0.751 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.080 0.920 41 H 0.253 0.747 42 H 0.195 0.805 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 1.419 26.446 -8.488 27.811 hybrid contribution 1.213 -0.023 1.501 1.930 sum 2.632 26.424 -6.986 27.458 Atomic orbital electron populations 1.21864 0.94794 1.02041 1.02076 1.21553 0.96711 0.96742 0.97238 1.22173 1.01339 0.95321 1.01803 1.21516 0.99734 0.89657 0.84471 0.87179 1.21792 1.01865 0.90488 0.87041 1.45693 1.62403 1.08482 1.20128 1.19933 0.77773 0.82425 0.87565 1.90709 1.42848 1.65539 1.44647 1.23382 1.05719 1.00253 0.99011 1.85514 1.79623 1.02260 1.24525 1.23195 1.45428 0.98578 1.02297 0.90099 1.26096 0.94760 0.95622 1.02574 1.70172 1.41672 1.04819 1.38024 0.84982 0.78894 0.77536 0.76758 1.19341 1.20270 1.18304 1.44666 1.30702 1.26995 1.29534 1.18337 0.86925 0.86070 0.86825 1.22190 1.01408 1.01558 1.08582 1.18219 0.82934 0.89152 0.89317 1.91642 1.47886 1.84546 1.84754 1.67862 1.15102 1.37055 1.14123 1.25094 0.84833 0.85586 0.96135 1.68088 1.36374 1.14695 1.12988 0.93135 0.91965 0.92413 0.87864 0.93715 0.91204 0.91930 0.90623 0.89242 0.75131 0.87514 0.87531 0.91971 0.74740 0.80472 0.75118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.74 71.98 0.63 -0.89 16 2 C -0.10 -0.80 2.74 -10.79 -0.03 -0.83 16 3 C -0.15 -1.23 7.50 71.98 0.54 -0.69 16 4 C 0.15 1.37 2.07 44.99 0.09 1.47 16 5 H 0.11 0.75 6.50 -2.39 -0.02 0.73 16 6 C 0.11 1.70 5.10 86.38 0.44 2.14 16 7 N -0.71 -14.55 5.39 -463.05 -2.49 -17.04 16 8 C 0.54 17.86 7.85 87.66 0.69 18.55 16 9 O -0.56 -23.71 15.86 -3.05 -0.05 -23.76 16 10 C -0.13 -4.99 6.16 71.24 0.44 -4.55 16 11 S -0.15 -7.92 20.57 -56.49 -1.16 -9.08 16 12 C -0.55 -30.84 9.50 67.95 0.65 -30.19 16 13 H 0.08 4.25 7.80 -2.92 -0.02 4.23 16 14 C 0.01 0.81 5.49 84.86 0.47 1.28 16 15 N -0.91 -55.33 13.22 21.65 0.29 -55.04 16 16 Si 1.00 43.22 29.55 68.60 2.03 45.24 16 17 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 20 N -0.69 -7.63 3.63 -324.14 -1.18 -8.81 16 21 C 0.46 6.53 6.51 133.10 0.87 7.39 16 22 C -0.31 -4.09 6.77 22.62 0.15 -3.93 16 23 C 0.36 6.33 8.50 84.61 0.72 7.05 16 24 F -0.11 -1.99 17.30 44.97 0.78 -1.22 16 25 N -0.62 -11.55 10.45 -201.31 -2.10 -13.66 16 26 C 0.37 5.63 12.28 180.90 2.22 7.85 16 27 N -0.60 -9.76 10.47 -197.70 -2.07 -11.83 16 28 H 0.05 0.59 7.47 -2.39 -0.02 0.57 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.66 6.46 -2.39 -0.02 0.64 16 31 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.04 0.51 5.38 -2.39 -0.01 0.50 16 33 H 0.07 0.45 6.35 -2.39 -0.02 0.43 16 34 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.08 1.29 6.34 -2.39 -0.02 1.28 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.41 6.56 8.14 -92.71 -0.75 5.81 16 38 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 39 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 40 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.41 5.11 8.73 -92.71 -0.81 4.30 16 42 H 0.18 1.58 4.16 -2.91 -0.01 1.56 16 43 H 0.23 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -76.60 369.55 1.43 -75.17 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -0.48 Total: 15.39 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 7.87 Total: 4.63 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -7.56 Total: -106.37 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.05 Total: -23.76 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.78 Total: -1.22 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.16 Total: -9.08 kcal Total: -76.60 1.43 -75.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105134557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.174 kcal (2) G-P(sol) polarization free energy of solvation -76.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds