Wall clock time and date at job start Wed Apr 1 2020 02:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 110.91712 * 2 1 4 4 C 1.54905 * 111.00288 * 236.09771 * 2 1 3 5 5 N 1.47426 * 104.83285 * 204.91912 * 4 2 1 6 6 C 1.34783 * 125.64784 * 204.09552 * 5 4 2 7 7 O 1.21585 * 120.00079 * 174.73975 * 6 5 4 8 8 C 1.47584 * 119.99585 * 354.73721 * 6 5 4 9 9 C 1.39732 * 120.13417 * 323.59404 * 8 6 5 10 10 C 1.37752 * 119.93968 * 179.79202 * 9 8 6 11 11 C 1.38714 * 120.21839 * 0.48710 * 10 9 8 12 12 F 1.35097 * 119.86722 * 179.72121 * 11 10 9 13 13 C 1.38666 * 120.26263 * 359.74492 * 11 10 9 14 14 F 1.35103 * 119.97156 * 179.97438 * 13 11 10 15 15 C 1.38384 * 120.05391 * 0.02562 * 13 11 10 16 16 F 1.35095 * 120.10489 * 179.97438 * 15 13 11 17 17 C 1.47016 * 108.70328 * 24.12466 * 5 4 2 18 18 C 1.54323 * 107.27324 * 358.94537 * 17 5 4 19 19 H 1.08999 * 110.72161 * 96.34522 * 18 17 5 20 20 C 1.52995 * 110.72080 * 219.44175 * 18 17 5 21 21 N 1.46503 * 109.47407 * 293.54549 * 20 18 17 22 22 C 1.36936 * 120.00357 * 180.27500 * 21 20 18 23 23 H 1.08000 * 119.99500 * 359.72075 * 22 21 20 24 24 C 1.38809 * 120.00324 * 179.72525 * 22 21 20 25 25 N 1.31611 * 120.00056 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 119.99794 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47260 * 89.99955 * 26 24 22 28 28 H 1.48503 * 109.47343 * 210.00311 * 26 24 22 29 29 H 1.48502 * 109.47204 * 330.00065 * 26 24 22 30 30 H 1.09008 * 109.46978 * 296.09834 * 1 2 3 31 31 H 1.08994 * 109.47271 * 56.09458 * 1 2 3 32 32 H 1.09001 * 109.47397 * 176.10345 * 1 2 3 33 33 H 1.09001 * 110.36909 * 86.07593 * 4 2 1 34 34 H 1.08999 * 110.46191 * 323.79999 * 4 2 1 35 35 H 1.07999 * 120.03215 * 0.02633 * 9 8 6 36 36 H 1.08006 * 119.88786 * 180.20720 * 10 9 8 37 37 H 1.08998 * 109.88345 * 239.52442 * 17 5 4 38 38 H 1.09003 * 110.00683 * 118.43422 * 17 5 4 39 39 H 1.09003 * 109.47550 * 173.54216 * 20 18 17 40 40 H 1.09006 * 109.47158 * 53.54680 * 20 18 17 41 41 H 0.97000 * 119.99600 * 0.02562 * 21 20 18 42 42 H 0.96999 * 120.00040 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4270 -1.2431 -0.7733 6 6 4.4476 -1.5617 -1.5941 7 8 5.5425 -1.8178 -1.1316 8 6 4.2359 -1.5996 -3.0541 9 6 3.0238 -2.0593 -3.5756 10 6 2.8290 -2.0890 -4.9389 11 6 3.8362 -1.6733 -5.7973 12 9 3.6396 -1.7106 -7.1334 13 6 5.0443 -1.2199 -5.2895 14 9 6.0215 -0.8169 -6.1309 15 6 5.2502 -1.1810 -3.9216 16 9 6.4269 -0.7400 -3.4258 17 6 3.4674 -1.2741 0.6960 18 6 2.0861 -0.8079 1.2022 19 1 1.4478 -1.6632 1.4240 20 6 2.2350 0.0876 2.4338 21 7 2.7615 -0.7012 3.5504 22 6 2.9740 -0.1092 4.7668 23 1 2.7576 0.9403 4.9016 24 6 3.4675 -0.8579 5.8264 25 7 3.6722 -0.2887 6.9953 26 14 3.8425 -2.6729 5.5928 27 1 5.2500 -2.8342 5.1474 28 1 3.6451 -3.3887 6.8788 29 1 2.9306 -3.2386 4.5663 30 1 -0.3633 0.4521 0.9230 31 1 -0.3633 0.5732 -0.8529 32 1 -0.3634 -1.0253 -0.0698 33 1 2.1559 -0.1720 -2.0837 34 1 1.4524 -1.6704 -1.4043 35 1 2.2390 -2.3876 -2.9102 36 1 1.8905 -2.4414 -5.3409 37 1 4.2425 -0.5998 1.0599 38 1 3.6661 -2.2884 1.0423 39 1 1.2619 0.4970 2.7052 40 1 2.9224 0.9032 2.2091 41 1 2.9563 -1.6437 3.4291 42 1 4.0167 -0.8120 7.7358 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106596008.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:20 Heat of formation + Delta-G solvation = -119.270681 kcal Electronic energy + Delta-G solvation = -29666.230379 eV Core-core repulsion = 25004.570667 eV Total energy + Delta-G solvation = -4661.659712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -50.25443 -49.66488 -48.91011 -40.77908 -39.03322 -37.91113 -34.97426 -33.19670 -31.75613 -31.40092 -31.25865 -29.46995 -26.80314 -26.07205 -24.42696 -23.79460 -22.84449 -21.23140 -20.59396 -19.98106 -18.81536 -18.53526 -18.22502 -17.65982 -17.31886 -16.71071 -16.56168 -16.31510 -15.91795 -15.67596 -15.35463 -15.15314 -14.83157 -14.67124 -14.60654 -14.20451 -14.08066 -13.85807 -13.35703 -13.14645 -12.91850 -12.78896 -12.56642 -12.49048 -12.40566 -12.21700 -12.19422 -11.58728 -11.54086 -11.03981 -10.77808 -10.65060 -10.41170 -10.26815 -10.14448 -9.61323 -9.56035 -9.54317 -8.93204 -8.84067 -7.27595 -5.78978 -3.15416 -0.19312 0.11242 2.07927 2.43528 2.79049 2.84269 3.35771 3.40016 3.45379 3.52960 3.62209 3.75361 3.81676 4.06827 4.26529 4.47064 4.57617 4.59823 4.76643 4.93364 4.95671 5.10579 5.12242 5.16556 5.22540 5.25463 5.30621 5.47734 5.52778 5.59143 5.67158 5.76570 5.89442 5.91903 6.00481 6.02839 6.12703 6.19800 6.53703 6.64773 7.20301 7.80871 7.95722 8.39532 9.17853 9.90171 10.08663 11.39300 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.018402 B = 0.002622 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.190951 B =10677.086293 C =11527.260495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.091 0.909 4 C 0.096 3.904 5 N -0.608 5.608 6 C 0.571 3.429 7 O -0.513 6.513 8 C -0.143 4.143 9 C -0.042 4.042 10 C -0.140 4.140 11 C 0.119 3.881 12 F -0.114 7.114 13 C 0.026 3.974 14 F -0.113 7.113 15 C 0.152 3.848 16 F -0.097 7.097 17 C 0.112 3.888 18 C -0.105 4.105 19 H 0.088 0.912 20 C 0.169 3.831 21 N -0.756 5.756 22 C -0.246 4.246 23 H 0.090 0.910 24 C 0.006 3.994 25 N -0.933 5.933 26 Si 0.883 3.117 27 H -0.282 1.282 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.161 0.839 36 H 0.162 0.838 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.034 0.966 40 H 0.030 0.970 41 H 0.361 0.639 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.346 -3.081 -29.047 30.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.109 0.891 4 C -0.027 4.027 5 N -0.341 5.341 6 C 0.357 3.643 7 O -0.389 6.389 8 C -0.148 4.148 9 C -0.060 4.060 10 C -0.159 4.159 11 C 0.099 3.901 12 F -0.093 7.093 13 C 0.005 3.995 14 F -0.091 7.091 15 C 0.131 3.869 16 F -0.075 7.075 17 C -0.009 4.009 18 C -0.124 4.124 19 H 0.106 0.894 20 C 0.041 3.959 21 N -0.402 5.402 22 C -0.376 4.376 23 H 0.108 0.892 24 C -0.190 4.190 25 N -0.581 5.581 26 Si 0.713 3.287 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.178 0.822 36 H 0.180 0.820 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.193 0.807 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.571 -3.030 -28.704 29.602 hybrid contribution 0.746 -1.178 -0.394 1.449 sum -5.825 -4.208 -29.098 29.973 Atomic orbital electron populations 1.21705 0.93301 1.02152 1.02621 1.22371 0.96472 0.99703 0.93169 0.89081 1.22696 0.83045 0.98370 0.98544 1.48363 1.12004 1.65967 1.07781 1.17351 0.83763 0.78562 0.84577 1.90907 1.23186 1.48280 1.76478 1.20005 0.94577 1.05830 0.94361 1.21360 0.95343 0.94434 0.94892 1.21110 0.99639 1.02582 0.92579 1.17575 0.92971 1.00910 0.78669 1.91594 1.95033 1.93744 1.28899 1.17404 0.87771 1.07747 0.86626 1.91595 1.59825 1.88254 1.69423 1.17284 0.83027 0.97771 0.88862 1.91664 1.42814 1.85645 1.87404 1.22168 0.98998 1.02579 0.77152 1.22606 0.94824 0.99483 0.95507 0.89383 1.20618 0.97358 0.92752 0.85142 1.42707 1.79602 1.08704 1.09179 1.19025 1.36606 0.96002 0.85977 0.89182 1.24669 1.01157 0.97586 0.95578 1.69695 1.51267 1.35509 1.01590 0.86575 0.78475 0.86726 0.76900 1.20896 1.21690 1.20380 0.91311 0.92422 0.92357 0.90325 0.90777 0.82177 0.82033 0.89885 0.91093 0.94843 0.95195 0.80662 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.31 37.16 0.35 -0.67 16 2 C -0.10 -0.89 3.09 -88.47 -0.27 -1.16 16 3 H 0.09 0.88 8.05 -51.93 -0.42 0.46 16 4 C 0.10 0.74 4.68 -2.53 -0.01 0.73 16 5 N -0.61 -7.18 3.33 -171.73 -0.57 -7.75 16 6 C 0.57 7.69 7.39 -12.45 -0.09 7.60 16 7 O -0.51 -9.28 16.45 5.29 0.09 -9.19 16 8 C -0.14 -1.43 5.42 -104.92 -0.57 -2.00 16 9 C -0.04 -0.24 8.17 -39.20 -0.32 -0.57 16 10 C -0.14 -0.67 10.00 -39.58 -0.40 -1.06 16 11 C 0.12 0.87 7.31 -39.25 -0.29 0.59 16 12 F -0.11 -0.90 17.17 2.25 0.04 -0.86 16 13 C 0.03 0.25 7.30 -39.37 -0.29 -0.04 16 14 F -0.11 -1.22 17.09 2.25 0.04 -1.19 16 15 C 0.15 1.68 7.25 -38.92 -0.28 1.40 16 16 F -0.10 -1.35 16.05 2.25 0.04 -1.31 16 17 C 0.11 1.61 6.15 -3.07 -0.02 1.59 16 18 C -0.10 -1.35 2.48 -88.79 -0.22 -1.57 16 19 H 0.09 1.10 8.04 -51.93 -0.42 0.68 16 20 C 0.17 2.94 5.58 -4.04 -0.02 2.92 16 21 N -0.76 -17.17 5.25 -59.91 -0.31 -17.49 16 22 C -0.25 -6.85 10.47 -15.06 -0.16 -7.00 16 23 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 24 C 0.01 0.18 5.50 -17.44 -0.10 0.08 16 25 N -0.93 -29.22 13.97 55.49 0.78 -28.44 16 26 Si 0.88 22.02 27.74 -169.99 -4.71 17.31 16 27 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 29 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 30 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 33 H 0.08 0.47 7.27 -51.93 -0.38 0.10 16 34 H 0.07 0.40 6.74 -51.93 -0.35 0.05 16 35 H 0.16 0.59 5.74 -52.49 -0.30 0.29 16 36 H 0.16 0.27 8.06 -52.48 -0.42 -0.15 16 37 H 0.08 1.40 7.77 -51.93 -0.40 1.00 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.03 0.55 8.06 -51.93 -0.42 0.13 16 41 H 0.36 8.03 5.38 -40.82 -0.22 7.81 16 42 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 359.99 15.07 5.42 5.42 Total: -1.00 -34.58 359.99 -6.92 -41.50 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.03 Total: 1.18 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -2.69 Total: 0.82 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.11 Total: -53.68 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.11 Total: -3.36 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.58 -6.92 -41.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106596008.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.770 kcal (2) G-P(sol) polarization free energy of solvation -34.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds