Wall clock time and date at job start Wed Apr 1 2020 02:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 110.91712 * 2 1 4 4 C 1.54905 * 111.00288 * 236.09771 * 2 1 3 5 5 N 1.47426 * 104.83285 * 204.91912 * 4 2 1 6 6 C 1.34783 * 125.64784 * 204.09552 * 5 4 2 7 7 O 1.21585 * 120.00079 * 174.73975 * 6 5 4 8 8 C 1.47584 * 119.99585 * 354.73721 * 6 5 4 9 9 C 1.39732 * 120.13417 * 323.59404 * 8 6 5 10 10 C 1.37752 * 119.93968 * 179.79202 * 9 8 6 11 11 C 1.38714 * 120.21839 * 0.48710 * 10 9 8 12 12 F 1.35097 * 119.86722 * 179.72121 * 11 10 9 13 13 C 1.38666 * 120.26263 * 359.74492 * 11 10 9 14 14 F 1.35103 * 119.97156 * 179.97438 * 13 11 10 15 15 C 1.38384 * 120.05391 * 0.02562 * 13 11 10 16 16 F 1.35095 * 120.10489 * 179.97438 * 15 13 11 17 17 C 1.47016 * 108.70328 * 24.12466 * 5 4 2 18 18 C 1.54323 * 107.27324 * 358.94537 * 17 5 4 19 19 H 1.08999 * 110.72161 * 96.34522 * 18 17 5 20 20 C 1.52995 * 110.72080 * 219.44175 * 18 17 5 21 21 N 1.46503 * 109.47407 * 293.54549 * 20 18 17 22 22 C 1.36936 * 120.00357 * 180.27500 * 21 20 18 23 23 H 1.08000 * 119.99500 * 359.72075 * 22 21 20 24 24 C 1.38809 * 120.00324 * 179.72525 * 22 21 20 25 25 N 1.31611 * 120.00056 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 119.99794 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47260 * 89.99955 * 26 24 22 28 28 H 1.48503 * 109.47343 * 210.00311 * 26 24 22 29 29 H 1.48502 * 109.47204 * 330.00065 * 26 24 22 30 30 H 1.09008 * 109.46978 * 296.09834 * 1 2 3 31 31 H 1.08994 * 109.47271 * 56.09458 * 1 2 3 32 32 H 1.09001 * 109.47397 * 176.10345 * 1 2 3 33 33 H 1.09001 * 110.36909 * 86.07593 * 4 2 1 34 34 H 1.08999 * 110.46191 * 323.79999 * 4 2 1 35 35 H 1.07999 * 120.03215 * 0.02633 * 9 8 6 36 36 H 1.08006 * 119.88786 * 180.20720 * 10 9 8 37 37 H 1.08998 * 109.88345 * 239.52442 * 17 5 4 38 38 H 1.09003 * 110.00683 * 118.43422 * 17 5 4 39 39 H 1.09003 * 109.47550 * 173.54216 * 20 18 17 40 40 H 1.09006 * 109.47158 * 53.54680 * 20 18 17 41 41 H 0.97000 * 119.99600 * 0.02562 * 21 20 18 42 42 H 0.96999 * 120.00040 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4270 -1.2431 -0.7733 6 6 4.4476 -1.5617 -1.5941 7 8 5.5425 -1.8178 -1.1316 8 6 4.2359 -1.5996 -3.0541 9 6 3.0238 -2.0593 -3.5756 10 6 2.8290 -2.0890 -4.9389 11 6 3.8362 -1.6733 -5.7973 12 9 3.6396 -1.7106 -7.1334 13 6 5.0443 -1.2199 -5.2895 14 9 6.0215 -0.8169 -6.1309 15 6 5.2502 -1.1810 -3.9216 16 9 6.4269 -0.7400 -3.4258 17 6 3.4674 -1.2741 0.6960 18 6 2.0861 -0.8079 1.2022 19 1 1.4478 -1.6632 1.4240 20 6 2.2350 0.0876 2.4338 21 7 2.7615 -0.7012 3.5504 22 6 2.9740 -0.1092 4.7668 23 1 2.7576 0.9403 4.9016 24 6 3.4675 -0.8579 5.8264 25 7 3.6722 -0.2887 6.9953 26 14 3.8425 -2.6729 5.5928 27 1 5.2500 -2.8342 5.1474 28 1 3.6451 -3.3887 6.8788 29 1 2.9306 -3.2386 4.5663 30 1 -0.3633 0.4521 0.9230 31 1 -0.3633 0.5732 -0.8529 32 1 -0.3634 -1.0253 -0.0698 33 1 2.1559 -0.1720 -2.0837 34 1 1.4524 -1.6704 -1.4043 35 1 2.2390 -2.3876 -2.9102 36 1 1.8905 -2.4414 -5.3409 37 1 4.2425 -0.5998 1.0599 38 1 3.6661 -2.2884 1.0423 39 1 1.2619 0.4970 2.7052 40 1 2.9224 0.9032 2.2091 41 1 2.9563 -1.6437 3.4291 42 1 4.0167 -0.8120 7.7358 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106596008.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:19 Heat of formation + Delta-G solvation = -142.518526 kcal Electronic energy + Delta-G solvation = -29667.238481 eV Core-core repulsion = 25004.570667 eV Total energy + Delta-G solvation = -4662.667814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.98092 -50.39940 -49.66803 -41.67739 -39.80292 -38.91028 -36.64874 -34.41040 -33.31378 -32.32858 -31.86915 -30.76206 -27.65915 -27.26313 -25.41040 -24.44272 -24.32140 -22.48855 -21.43210 -21.01453 -19.74487 -19.47725 -19.21942 -18.90801 -18.08790 -17.58165 -17.52464 -17.10412 -16.66753 -16.62413 -16.48725 -16.14388 -15.92472 -15.67284 -15.60207 -15.44310 -15.27647 -14.77090 -14.54731 -14.28383 -14.13322 -13.80055 -13.64026 -13.36216 -13.24294 -13.16054 -12.98021 -12.94131 -12.83597 -12.48764 -12.13034 -11.87116 -11.85834 -11.53314 -11.40971 -11.30151 -11.00028 -10.22447 -10.18963 -9.80215 -9.31075 -8.04296 -5.37535 -0.83682 -0.48988 1.28536 1.34847 1.40506 1.46070 1.58715 2.06185 2.14650 2.46689 2.90658 2.93762 3.03480 3.27566 3.29776 3.36720 3.46045 3.59831 3.70453 3.99329 4.14838 4.20577 4.29225 4.35812 4.47960 4.53798 4.60398 4.62788 4.67582 4.74921 4.79013 4.85035 4.92131 5.03492 5.09686 5.21277 5.26812 5.34016 5.42308 5.59130 5.74806 6.19585 6.28838 6.83019 7.06906 7.82947 8.00617 9.17322 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.018402 B = 0.002622 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.190951 B =10677.086293 C =11527.260495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 H 0.081 0.919 4 C 0.092 3.908 5 N -0.602 5.602 6 C 0.565 3.435 7 O -0.576 6.576 8 C -0.152 4.152 9 C -0.019 4.019 10 C -0.106 4.106 11 C 0.126 3.874 12 F -0.115 7.115 13 C 0.011 3.989 14 F -0.128 7.128 15 C 0.122 3.878 16 F -0.128 7.128 17 C 0.113 3.887 18 C -0.093 4.093 19 H 0.104 0.896 20 C 0.165 3.835 21 N -0.759 5.759 22 C -0.233 4.233 23 H 0.057 0.943 24 C -0.064 4.064 25 N -0.984 5.984 26 Si 0.950 3.050 27 H -0.287 1.287 28 H -0.293 1.293 29 H -0.244 1.244 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.197 0.803 36 H 0.211 0.789 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.040 0.960 40 H 0.016 0.984 41 H 0.365 0.635 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.250 -5.181 -32.540 34.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.110 4.110 3 H 0.099 0.901 4 C -0.028 4.028 5 N -0.334 5.334 6 C 0.354 3.646 7 O -0.456 6.456 8 C -0.156 4.156 9 C -0.037 4.037 10 C -0.124 4.124 11 C 0.105 3.895 12 F -0.094 7.094 13 C -0.010 4.010 14 F -0.107 7.107 15 C 0.101 3.899 16 F -0.106 7.106 17 C -0.010 4.010 18 C -0.112 4.112 19 H 0.122 0.878 20 C 0.039 3.961 21 N -0.405 5.405 22 C -0.364 4.364 23 H 0.075 0.925 24 C -0.255 4.255 25 N -0.635 5.635 26 Si 0.778 3.222 27 H -0.214 1.214 28 H -0.220 1.220 29 H -0.168 1.168 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.124 0.876 34 H 0.135 0.865 35 H 0.213 0.787 36 H 0.228 0.772 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.034 0.966 41 H 0.198 0.802 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.548 -5.111 -32.273 34.336 hybrid contribution 1.903 -0.391 0.633 2.043 sum -8.645 -5.503 -31.640 33.258 Atomic orbital electron populations 1.21694 0.91063 1.03601 1.02928 1.22372 0.98115 0.98827 0.91659 0.90073 1.23112 0.80903 1.00295 0.98527 1.48396 1.13477 1.65059 1.06473 1.17925 0.83040 0.77475 0.86119 1.90869 1.25734 1.51206 1.77828 1.19815 0.96215 1.07794 0.91799 1.21734 0.93922 0.92150 0.95881 1.21588 1.00079 0.99367 0.91331 1.17781 0.92512 1.00287 0.78938 1.91602 1.94909 1.93665 1.29180 1.17602 0.88589 1.08885 0.85938 1.91546 1.60796 1.88650 1.69693 1.17613 0.82706 0.99765 0.89819 1.91577 1.44691 1.86433 1.87895 1.21961 0.98802 1.01010 0.79228 1.22475 0.94417 0.99653 0.94681 0.87764 1.20790 0.96646 0.93040 0.85636 1.42739 1.79702 1.09249 1.08787 1.19034 1.34716 0.94769 0.87884 0.92460 1.25497 1.02065 1.02652 0.95334 1.69876 1.53392 1.37463 1.02733 0.85476 0.78437 0.80888 0.77435 1.21372 1.22003 1.16818 0.92986 0.89926 0.90628 0.87599 0.86463 0.78653 0.77194 0.93781 0.92110 0.94182 0.96573 0.80151 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.31 71.98 0.67 -0.63 16 2 C -0.09 -1.32 3.09 -9.40 -0.03 -1.35 16 3 H 0.08 1.37 8.05 -2.39 -0.02 1.35 16 4 C 0.09 0.95 4.68 86.85 0.41 1.36 16 5 N -0.60 -13.04 3.33 -815.50 -2.71 -15.76 16 6 C 0.57 14.96 7.39 86.71 0.64 15.60 16 7 O -0.58 -21.96 16.45 -3.98 -0.07 -22.03 16 8 C -0.15 -2.73 5.42 -20.05 -0.11 -2.84 16 9 C -0.02 -0.12 8.17 22.52 0.18 0.07 16 10 C -0.11 -0.35 10.00 22.27 0.22 -0.12 16 11 C 0.13 1.39 7.31 22.49 0.16 1.56 16 12 F -0.12 -1.42 17.17 44.97 0.77 -0.65 16 13 C 0.01 0.20 7.30 22.41 0.16 0.36 16 14 F -0.13 -2.86 17.09 44.97 0.77 -2.09 16 15 C 0.12 2.71 7.25 22.70 0.16 2.88 16 16 F -0.13 -3.86 16.05 44.97 0.72 -3.13 16 17 C 0.11 3.17 6.15 86.73 0.53 3.71 16 18 C -0.09 -2.20 2.48 -9.61 -0.02 -2.22 16 19 H 0.10 2.21 8.04 -2.39 -0.02 2.19 16 20 C 0.16 5.71 5.58 86.38 0.48 6.19 16 21 N -0.76 -34.47 5.25 -343.45 -1.80 -36.28 16 22 C -0.23 -13.29 10.47 84.03 0.88 -12.41 16 23 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 24 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 25 N -0.98 -63.78 13.97 21.65 0.30 -63.47 16 26 Si 0.95 45.91 27.74 68.60 1.90 47.81 16 27 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 28 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 29 H -0.24 -10.31 6.52 99.48 0.65 -9.66 16 30 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.07 0.51 8.08 -2.39 -0.02 0.49 16 33 H 0.11 0.63 7.27 -2.39 -0.02 0.61 16 34 H 0.12 0.32 6.74 -2.39 -0.02 0.30 16 35 H 0.20 -0.13 5.74 -2.91 -0.02 -0.15 16 36 H 0.21 -1.16 8.06 -2.91 -0.02 -1.18 16 37 H 0.04 1.57 7.77 -2.39 -0.02 1.55 16 38 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.02 0.61 8.06 -2.38 -0.02 0.59 16 41 H 0.37 15.86 5.38 -92.71 -0.50 15.36 16 42 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -84.46 359.99 5.23 -79.23 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 0.52 Total: 7.56 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 4.82 Total: 8.81 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -4.21 Total: -115.51 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.07 Total: -22.03 kcal Atomic # 9 Polarization: -8.13 SS G_CDS: 2.26 Total: -5.87 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.90 Total: 47.81 kcal Total: -84.46 5.23 -79.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106596008.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.284 kcal (2) G-P(sol) polarization free energy of solvation -84.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds