Wall clock time and date at job start Wed Apr 1 2020 00:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47214 * 2 1 4 4 N 1.32614 * 120.41241 * 89.99972 * 3 2 1 5 5 C 1.31712 * 121.02692 * 179.97438 * 4 3 2 6 6 N 1.31812 * 121.88330 * 0.02562 * 5 4 3 7 7 C 1.32904 * 120.70954 * 359.97438 * 6 5 4 8 8 N 1.38675 * 120.54289 * 180.02562 * 7 6 5 9 9 C 1.46490 * 120.00141 * 359.97438 * 8 7 6 10 10 C 1.52999 * 109.47433 * 180.02562 * 9 8 7 11 11 H 1.09006 * 109.47020 * 295.00069 * 10 9 8 12 12 C 1.52999 * 109.47427 * 175.00094 * 10 9 8 13 13 N 1.46505 * 109.47051 * 54.99566 * 10 9 8 14 14 C 1.34780 * 119.99770 * 205.00002 * 13 10 9 15 15 O 1.21282 * 120.00242 * 0.02562 * 14 13 10 16 16 C 1.50694 * 119.99438 * 179.97438 * 14 13 10 17 17 S 1.81003 * 109.46872 * 180.02562 * 16 14 13 18 18 C 1.76204 * 99.99879 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00198 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99629 * 180.02562 * 18 17 16 21 21 N 1.31632 * 119.99505 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00234 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47334 * 89.99874 * 22 20 18 24 24 H 1.48504 * 109.47281 * 210.00245 * 22 20 18 25 25 H 1.48508 * 109.47042 * 329.99713 * 22 20 18 26 26 C 1.38231 * 120.41884 * 269.97589 * 3 2 1 27 27 F 1.35107 * 120.85171 * 0.04782 * 26 3 2 28 28 H 1.09001 * 109.46852 * 60.00160 * 1 2 3 29 29 H 1.09004 * 109.46793 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47182 * 299.99920 * 1 2 3 31 31 H 1.08997 * 109.47182 * 240.00080 * 2 1 3 32 32 H 1.09001 * 109.47291 * 120.00476 * 2 1 3 33 33 H 1.08006 * 119.06091 * 179.97438 * 5 4 3 34 34 H 0.97001 * 119.99948 * 179.97438 * 8 7 6 35 35 H 1.09000 * 109.47041 * 299.99859 * 9 8 7 36 36 H 1.09002 * 109.47128 * 60.00095 * 9 8 7 37 37 H 1.09003 * 109.47148 * 180.02562 * 12 10 9 38 38 H 1.09000 * 109.46788 * 299.99569 * 12 10 9 39 39 H 1.08993 * 109.47415 * 59.99545 * 12 10 9 40 40 H 0.96997 * 119.99706 * 25.00787 * 13 10 9 41 41 H 1.08996 * 109.47844 * 300.00615 * 16 14 13 42 42 H 1.09006 * 109.47166 * 60.00641 * 16 14 13 43 43 H 0.97000 * 119.99792 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2561 2.0537 1.1437 5 6 2.6957 3.2953 1.1578 6 7 2.9318 3.9629 0.0461 7 6 2.7321 3.3981 -1.1403 8 7 2.9821 4.1036 -2.3077 9 6 3.4699 5.4832 -2.2396 10 6 3.6621 6.0267 -3.6569 11 1 4.4518 5.4660 -4.1571 12 6 4.0514 7.5048 -3.5878 13 7 2.4121 5.8854 -4.4078 14 6 2.4393 5.8079 -5.7531 15 8 3.4985 5.8547 -6.3420 16 6 1.1536 5.6620 -6.5254 17 16 1.5191 5.5849 -8.2964 18 6 -0.1134 5.4206 -8.9389 19 1 -0.9583 5.3948 -8.2666 20 6 -0.3135 5.3231 -10.3090 21 7 -1.5330 5.1998 -10.7889 22 14 1.1478 5.3668 -11.4717 23 1 1.6432 3.9851 -11.6965 24 1 0.7316 5.9605 -12.7678 25 1 2.2305 6.1900 -10.8753 26 6 2.2661 2.0805 -1.1920 27 9 2.0492 1.4684 -2.3768 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.8667 3.7805 2.1074 34 1 2.8340 3.6835 -3.1694 35 1 2.7436 6.0996 -1.7099 36 1 4.4218 5.5062 -1.7091 37 1 4.1879 7.8921 -4.5975 38 1 3.2617 8.0655 -3.0877 39 1 4.9813 7.6099 -3.0291 40 1 1.5650 5.8478 -3.9368 41 1 0.6475 4.7466 -6.2190 42 1 0.5095 6.5181 -6.3239 43 1 -1.6729 5.1320 -11.7463 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108254321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:59 Heat of formation + Delta-G solvation = -43.682844 kcal Electronic energy + Delta-G solvation = -26645.143657 eV Core-core repulsion = 22572.894817 eV Total energy + Delta-G solvation = -4072.248839 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.127 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.21385 -41.26032 -39.73684 -37.53521 -35.61138 -34.47049 -32.47491 -32.20770 -31.55513 -30.39486 -28.78544 -26.74669 -25.65057 -24.92188 -24.23414 -22.08703 -21.74512 -20.54830 -18.94416 -18.15378 -17.84775 -17.63783 -16.81078 -16.47136 -16.39737 -15.61575 -15.34033 -15.07698 -15.00484 -14.64330 -14.54961 -14.26095 -14.18484 -13.74038 -13.56747 -13.47517 -13.20888 -13.02476 -12.86618 -12.82904 -12.22821 -12.04596 -11.99550 -11.81708 -11.54130 -11.38899 -11.30053 -11.21681 -11.03961 -10.64826 -10.04850 -9.89489 -9.62957 -9.56850 -9.19846 -9.03204 -8.55289 -8.49378 -6.96384 -6.32206 -4.04500 0.45728 0.80038 2.43703 2.69123 2.85041 3.22533 3.30521 3.33305 3.47064 3.50988 3.58510 3.66693 3.81942 4.27600 4.29097 4.29815 4.52091 4.67691 4.77011 4.86724 4.88655 4.99445 5.06877 5.08134 5.15465 5.24740 5.26200 5.31321 5.46795 5.50115 5.61074 5.68934 5.76350 5.77670 5.90070 5.94742 6.01193 6.24505 6.39616 6.54882 7.03736 7.45376 7.77998 7.90830 8.35870 8.38441 9.13766 10.77063 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.013085 B = 0.002467 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.290156 B =11349.071337 C =12977.686356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.078 4.078 3 C 0.183 3.817 4 N -0.541 5.541 5 C 0.334 3.666 6 N -0.560 5.560 7 C 0.424 3.576 8 N -0.702 5.702 9 C 0.123 3.877 10 C 0.130 3.870 11 H 0.095 0.905 12 C -0.160 4.160 13 N -0.737 5.737 14 C 0.533 3.467 15 O -0.515 6.515 16 C -0.125 4.125 17 S -0.140 6.140 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.073 4.073 27 F -0.123 7.123 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.202 0.798 34 H 0.419 0.581 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.400 0.600 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.296 -4.327 26.346 27.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C 0.040 3.960 4 N -0.260 5.260 5 C 0.045 3.955 6 N -0.286 5.286 7 C 0.177 3.823 8 N -0.335 5.335 9 C -0.001 4.001 10 C 0.025 3.975 11 H 0.113 0.887 12 C -0.219 4.219 13 N -0.392 5.392 14 C 0.319 3.681 15 O -0.389 6.389 16 C -0.276 4.276 17 S 0.086 5.914 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.103 4.103 27 F -0.102 7.102 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.219 0.781 34 H 0.258 0.742 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.234 0.766 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.173 -3.651 25.991 28.148 hybrid contribution -1.505 -0.605 -1.088 1.953 sum 8.668 -4.257 24.902 26.709 Atomic orbital electron populations 1.21686 0.93160 1.02778 1.02571 1.20542 0.97257 0.89294 1.04493 1.21620 0.90858 0.97133 0.86407 1.68314 1.18423 1.11108 1.28160 1.24738 0.88201 0.86675 0.95903 1.68067 1.25004 1.38619 0.96861 1.18675 0.88724 0.86656 0.88230 1.44605 1.69601 1.14368 1.04963 1.21767 1.01031 0.80883 0.96398 1.21186 0.88284 0.97709 0.90356 0.88663 1.22101 1.01684 0.94532 1.03564 1.46128 1.09256 1.77148 1.06673 1.20320 0.91176 0.75050 0.81578 1.90709 1.31944 1.47725 1.68536 1.23290 0.97489 1.05726 1.01102 1.84785 1.14228 1.96588 0.95796 1.22307 0.90675 1.58212 0.95768 0.89395 1.24721 0.96046 0.93170 0.97386 1.69939 1.20181 1.47477 1.14022 0.86733 0.83685 0.80246 0.81161 1.19193 1.19909 1.15942 1.18590 1.14920 0.93126 0.83614 1.91513 1.93217 1.82279 1.43187 0.92353 0.91271 0.92010 0.89465 0.88913 0.78116 0.74216 0.90432 0.89678 0.91007 0.92047 0.91378 0.76567 0.88519 0.88414 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.89 37.16 0.37 -0.63 16 2 C -0.08 -0.58 6.11 -27.88 -0.17 -0.75 16 3 C 0.18 1.76 6.07 -82.26 -0.50 1.26 16 4 N -0.54 -5.13 10.37 -10.84 -0.11 -5.24 16 5 C 0.33 2.77 12.28 -92.21 -1.13 1.63 16 6 N -0.56 -5.34 9.70 -13.74 -0.13 -5.47 16 7 C 0.42 4.30 7.52 -154.64 -1.16 3.14 16 8 N -0.70 -6.40 5.53 -60.20 -0.33 -6.73 16 9 C 0.12 0.95 5.29 -4.05 -0.02 0.93 16 10 C 0.13 1.23 2.73 -67.93 -0.19 1.04 16 11 H 0.10 1.07 7.58 -51.93 -0.39 0.68 16 12 C -0.16 -1.41 9.48 37.16 0.35 -1.05 16 13 N -0.74 -8.22 4.52 -53.80 -0.24 -8.47 16 14 C 0.53 8.70 7.81 -10.99 -0.09 8.61 16 15 O -0.52 -10.32 15.52 5.56 0.09 -10.23 16 16 C -0.13 -2.32 6.16 36.00 0.22 -2.10 16 17 S -0.14 -3.48 18.55 -107.50 -1.99 -5.47 16 18 C -0.52 -14.87 10.04 30.94 0.31 -14.56 16 19 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 20 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 21 N -0.88 -26.42 13.97 55.49 0.78 -25.64 16 22 Si 0.86 21.61 27.74 -169.99 -4.71 16.89 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 25 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 26 C -0.07 -0.76 7.32 -38.98 -0.29 -1.05 16 27 F -0.12 -1.37 16.07 2.25 0.04 -1.34 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.62 7.71 -51.93 -0.40 0.22 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.20 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.42 4.06 7.71 -40.82 -0.31 3.75 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.40 3.66 8.60 -40.82 -0.35 3.31 16 41 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.10 1.70 8.14 -51.91 -0.42 1.27 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -34.02 384.71 -9.33 -43.35 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.11 Total: 3.40 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -2.39 Total: -0.85 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.05 Total: -51.55 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.89 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.02 -9.33 -43.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108254321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.335 kcal (2) G-P(sol) polarization free energy of solvation -34.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds