Wall clock time and date at job start Wed Apr 1 2020 02:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46803 * 2 1 4 4 C 1.52998 * 109.47335 * 120.00095 * 2 1 3 5 5 C 1.52996 * 109.46908 * 184.99983 * 4 2 1 6 6 C 1.53010 * 109.47143 * 179.97438 * 5 4 2 7 7 N 1.46495 * 109.47064 * 179.97438 * 6 5 4 8 8 C 1.39120 * 119.99599 * 179.97438 * 7 6 5 9 9 N 1.32565 * 120.11101 * 0.02562 * 8 7 6 10 10 C 1.32302 * 119.94306 * 179.97438 * 9 8 7 11 11 C 1.38065 * 120.16575 * 0.02562 * 10 9 8 12 12 N 1.32349 * 120.22405 * 0.02562 * 11 10 9 13 13 C 1.32068 * 120.04995 * 359.97438 * 12 11 10 14 14 F 1.35107 * 120.07998 * 179.97438 * 13 12 11 15 15 N 1.46501 * 109.46855 * 240.00007 * 2 1 3 16 16 C 1.34779 * 119.99855 * 84.99811 * 15 2 1 17 17 O 1.21282 * 120.00169 * 0.02562 * 16 15 2 18 18 C 1.50697 * 120.00116 * 179.97438 * 16 15 2 19 19 S 1.81004 * 109.47389 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99866 * 180.02562 * 19 18 16 21 21 H 1.07993 * 120.00222 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99514 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00249 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99729 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47004 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46717 * 119.99934 * 24 22 20 27 27 H 1.48490 * 109.47057 * 239.99802 * 24 22 20 28 28 H 1.09005 * 109.47185 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47089 * 299.99551 * 1 2 3 30 30 H 1.08995 * 109.47404 * 59.99902 * 1 2 3 31 31 H 1.08998 * 109.46979 * 64.99855 * 4 2 1 32 32 H 1.09002 * 109.46877 * 304.99738 * 4 2 1 33 33 H 1.08998 * 109.47405 * 60.00132 * 5 4 2 34 34 H 1.08994 * 109.47300 * 299.99870 * 5 4 2 35 35 H 1.08998 * 109.46857 * 59.99803 * 6 5 4 36 36 H 1.09002 * 109.46765 * 299.99829 * 6 5 4 37 37 H 0.96996 * 120.00517 * 0.02562 * 7 6 5 38 38 H 1.08002 * 119.91865 * 179.97438 * 10 9 8 39 39 H 1.08004 * 119.88650 * 179.72239 * 11 10 9 40 40 H 0.96989 * 120.00186 * 264.99534 * 15 2 1 41 41 H 1.09006 * 109.46947 * 300.00075 * 18 16 15 42 42 H 1.08999 * 109.47286 * 59.99952 * 18 16 15 43 43 H 0.96998 * 120.00341 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3135 6 6 4.0749 -1.3340 2.5632 7 7 5.5350 -1.2311 2.6244 8 6 6.2296 -1.8136 3.6797 9 7 5.5725 -2.4628 4.6306 10 6 6.2365 -3.0160 5.6323 11 6 7.6125 -2.9186 5.6904 12 7 8.2750 -2.2712 4.7451 13 6 7.6210 -1.7157 3.7412 14 9 8.2967 -1.0542 2.7762 15 7 2.0183 -0.6906 -1.1962 16 6 2.1469 -0.0182 -2.3572 17 8 1.8589 1.1586 -2.4115 18 6 2.6497 -0.7284 -3.5875 19 16 2.7111 0.4347 -4.9730 20 6 3.3140 -0.6306 -6.2403 21 1 3.5234 -1.6669 -6.0204 22 6 3.5208 -0.1374 -7.5212 23 7 3.2661 1.1259 -7.7892 24 14 4.1607 -1.2666 -8.8647 25 1 4.3657 -2.6289 -8.3103 26 1 3.1735 -1.3268 -9.9725 27 1 5.4509 -0.7418 -9.3795 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.7517 -1.7715 1.2055 32 1 1.6054 -0.2617 2.1369 33 1 3.8532 0.4370 1.3572 34 1 3.9994 -1.0727 0.4259 35 1 3.7865 -2.3842 2.5199 36 1 3.6403 -0.8740 3.4507 37 1 6.0173 -0.7562 1.9297 38 1 5.7008 -3.5444 6.4070 39 1 8.1496 -3.3680 6.5126 40 1 2.2490 -1.6317 -1.1527 41 1 3.6491 -1.1202 -3.3980 42 1 1.9775 -1.5508 -3.8326 43 1 3.4110 1.4706 -8.6842 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114863686.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:37 Heat of formation + Delta-G solvation = -39.977862 kcal Electronic energy + Delta-G solvation = -25759.013076 eV Core-core repulsion = 21686.924896 eV Total energy + Delta-G solvation = -4072.088179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.127 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.38991 -41.35763 -39.50870 -37.59982 -36.13163 -34.32621 -32.90959 -32.44202 -31.33622 -29.82844 -28.52304 -26.62181 -25.49885 -24.83425 -23.81912 -22.19057 -21.37341 -20.34075 -18.93122 -18.41054 -18.02960 -17.81091 -16.87440 -16.58031 -16.22298 -15.70917 -15.56159 -15.13527 -14.95324 -14.81801 -14.44982 -14.41353 -14.08636 -13.90002 -13.62883 -13.39889 -13.21720 -13.05265 -12.68237 -12.39535 -12.12957 -11.96226 -11.92385 -11.82902 -11.41363 -11.24784 -11.08263 -11.03427 -10.93467 -10.76085 -10.58591 -9.81755 -9.74101 -9.39622 -9.09232 -8.92018 -8.33283 -8.24759 -6.51476 -6.23254 -3.93733 0.29652 0.65236 2.38749 3.02582 3.02787 3.08275 3.14339 3.20508 3.27412 3.32052 3.68981 3.70858 3.78028 4.19012 4.29846 4.54184 4.57889 4.65292 4.72233 4.88492 5.01002 5.08484 5.12051 5.16789 5.18961 5.33339 5.40842 5.44929 5.56910 5.66688 5.68425 5.71658 5.86517 5.86808 6.02944 6.11922 6.18753 6.37651 6.45629 6.66385 6.92348 7.33460 7.58501 7.70206 8.33978 8.60878 9.22316 10.84193 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.011702 B = 0.001969 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.078392 B =14220.332188 C =16040.385712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.088 0.912 4 C -0.119 4.119 5 C -0.137 4.137 6 C 0.131 3.869 7 N -0.707 5.707 8 C 0.353 3.647 9 N -0.480 5.480 10 C 0.097 3.903 11 C 0.008 3.992 12 N -0.431 5.431 13 C 0.196 3.804 14 F -0.106 7.106 15 N -0.735 5.735 16 C 0.533 3.467 17 O -0.517 6.517 18 C -0.154 4.154 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.417 0.583 38 H 0.178 0.822 39 H 0.176 0.824 40 H 0.396 0.604 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.082 -9.589 29.243 30.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.106 0.894 4 C -0.158 4.158 5 C -0.175 4.175 6 C 0.007 3.993 7 N -0.340 5.340 8 C 0.110 3.890 9 N -0.204 5.204 10 C -0.063 4.063 11 C -0.152 4.152 12 N -0.150 5.150 13 C 0.030 3.970 14 F -0.086 7.086 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.205 1.205 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.255 0.745 38 H 0.195 0.805 39 H 0.193 0.807 40 H 0.230 0.770 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.393 -7.454 28.973 29.949 hybrid contribution 1.259 -2.281 -1.218 2.877 sum 2.653 -9.735 27.755 29.532 Atomic orbital electron populations 1.22183 0.95346 1.02035 1.02687 1.20880 0.93996 0.97674 0.83677 0.89375 1.21770 0.94338 1.01636 0.98045 1.21851 0.96502 1.01660 0.97447 1.21435 0.78022 1.01165 0.98638 1.44698 1.07570 1.57815 1.23913 1.19111 0.87258 0.92472 0.90124 1.68118 1.38136 1.11545 1.02603 1.23559 0.92934 0.94788 0.95026 1.23201 0.92887 1.00821 0.98294 1.67608 1.40527 1.06197 1.00670 1.18435 0.86398 1.01517 0.90612 1.91639 1.80641 1.77484 1.58822 1.46124 1.69384 1.13817 1.09594 1.20296 0.76815 0.87226 0.83786 1.90699 1.48295 1.15778 1.84387 1.23539 1.03586 1.04865 0.98495 1.85396 1.86319 1.12871 0.98813 1.22906 1.50878 0.98169 0.96380 0.90905 1.24998 0.95108 0.95545 0.97977 1.70024 1.45576 1.13195 1.21461 0.86118 0.78538 0.80128 0.80718 1.19630 1.20562 1.20547 0.92587 0.91927 0.91630 0.90974 0.90087 0.90807 0.90650 0.91272 0.91287 0.74482 0.80481 0.80698 0.77001 0.89353 0.89305 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.48 37.16 0.35 -1.30 16 2 C 0.14 1.46 2.57 -67.93 -0.17 1.28 16 3 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 4 C -0.12 -0.78 4.75 -26.73 -0.13 -0.91 16 5 C -0.14 -0.92 5.22 -26.73 -0.14 -1.06 16 6 C 0.13 0.87 5.72 -4.04 -0.02 0.84 16 7 N -0.71 -5.51 5.71 -60.21 -0.34 -5.85 16 8 C 0.35 3.21 7.50 -154.58 -1.16 2.05 16 9 N -0.48 -3.98 9.73 -12.17 -0.12 -4.10 16 10 C 0.10 0.54 11.21 -17.41 -0.20 0.35 16 11 C 0.01 0.05 11.21 -17.39 -0.19 -0.15 16 12 N -0.43 -4.24 10.50 -13.23 -0.14 -4.37 16 13 C 0.20 2.00 8.47 -16.94 -0.14 1.85 16 14 F -0.11 -1.14 16.68 2.25 0.04 -1.11 16 15 N -0.73 -8.87 4.53 -53.81 -0.24 -9.11 16 16 C 0.53 9.47 7.81 -10.99 -0.09 9.38 16 17 O -0.52 -11.35 15.52 5.56 0.09 -11.26 16 18 C -0.15 -3.03 6.16 36.00 0.22 -2.81 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 24 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.57 7.75 -51.93 -0.40 0.17 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.42 3.01 7.96 -40.82 -0.33 2.68 16 38 H 0.18 0.32 8.06 -52.49 -0.42 -0.11 16 39 H 0.18 0.47 8.06 -52.48 -0.42 0.05 16 40 H 0.40 3.71 8.60 -40.82 -0.35 3.36 16 41 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 42 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 387.97 15.07 5.85 5.85 Total: -1.00 -36.26 387.97 -8.94 -45.20 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.09 Total: 0.97 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -1.47 Total: -3.37 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -0.11 Total: -48.81 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.26 -8.94 -45.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114863686.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.221 kcal (2) G-P(sol) polarization free energy of solvation -36.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds