Wall clock time and date at job start Wed Apr 1 2020 02:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47270 * 2 1 4 4 C 1.53001 * 109.47029 * 240.00417 * 2 1 3 5 5 C 1.53001 * 109.47204 * 174.99839 * 4 2 1 6 6 H 1.08999 * 109.46935 * 304.99827 * 5 4 2 7 7 C 1.52999 * 109.46944 * 185.00089 * 5 4 2 8 8 N 1.46499 * 109.47193 * 64.99886 * 5 4 2 9 9 C 1.34777 * 119.99665 * 205.27836 * 8 5 4 10 10 O 1.21283 * 119.99990 * 359.71991 * 9 8 5 11 11 C 1.50698 * 119.99538 * 179.72653 * 9 8 5 12 12 C 1.50698 * 109.46944 * 179.97438 * 11 9 8 13 13 C 1.38464 * 120.02309 * 89.99705 * 12 11 9 14 14 F 1.35099 * 120.01478 * 0.02562 * 13 12 11 15 15 C 1.38447 * 119.96637 * 179.97438 * 13 12 11 16 16 C 1.38233 * 119.99859 * 359.97438 * 15 13 12 17 17 C 1.38206 * 120.03690 * 0.02562 * 16 15 13 18 18 C 1.38297 * 120.02088 * 269.72113 * 12 11 9 19 19 Cl 1.73595 * 119.99556 * 0.02562 * 18 12 11 20 20 N 1.46500 * 109.47524 * 120.00137 * 2 1 3 21 21 C 1.36944 * 120.00044 * 275.00163 * 20 2 1 22 22 H 1.08006 * 119.99457 * 359.97438 * 21 20 2 23 23 C 1.38803 * 119.99791 * 180.02562 * 21 20 2 24 24 N 1.31621 * 120.00397 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99880 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47623 * 89.99466 * 25 23 21 27 27 H 1.48504 * 109.47373 * 209.99528 * 25 23 21 28 28 H 1.48503 * 109.47166 * 329.99406 * 25 23 21 29 29 H 1.08997 * 109.46762 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46832 * 299.99696 * 1 2 3 31 31 H 1.08999 * 109.47542 * 59.99691 * 1 2 3 32 32 H 1.08996 * 109.47061 * 54.99506 * 4 2 1 33 33 H 1.08994 * 109.46820 * 294.99619 * 4 2 1 34 34 H 1.09001 * 109.46823 * 179.97438 * 7 5 4 35 35 H 1.08999 * 109.47091 * 299.99643 * 7 5 4 36 36 H 1.08996 * 109.47098 * 60.00014 * 7 5 4 37 37 H 0.97001 * 119.99790 * 24.99549 * 8 5 4 38 38 H 1.09003 * 109.47112 * 299.99065 * 11 9 8 39 39 H 1.08993 * 109.47916 * 59.99687 * 11 9 8 40 40 H 1.08000 * 120.00075 * 179.97438 * 15 13 12 41 41 H 1.07992 * 119.98076 * 180.02562 * 16 15 13 42 42 H 1.07998 * 119.97861 * 180.02562 * 17 16 15 43 43 H 0.96998 * 119.99715 * 94.99572 * 20 2 1 44 44 H 0.96998 * 120.00245 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4359 -1.2679 7 6 4.0644 -1.2248 -2.6242 8 7 4.1537 -1.3341 -0.1826 9 6 5.3724 -0.9873 0.2766 10 8 5.9837 -0.0817 -0.2499 11 6 5.9756 -1.7248 1.4442 12 6 7.3321 -1.1475 1.7565 13 6 7.4493 -0.1007 2.6552 14 9 6.3476 0.4033 3.2530 15 6 8.6961 0.4285 2.9417 16 6 9.8233 -0.0886 2.3310 17 6 9.7064 -1.1334 1.4339 18 6 8.4613 -1.6666 1.1500 19 17 8.3163 -2.9833 0.0280 20 7 2.0184 -0.6906 1.1961 21 6 2.1492 -0.0075 2.3758 22 1 1.8927 1.0405 2.4241 23 6 2.6125 -0.6618 3.5089 24 7 2.9256 -1.9388 3.4498 25 14 2.7903 0.2699 5.1182 26 1 1.5227 0.1777 5.8863 27 1 3.8953 -0.3227 5.9138 28 1 3.0942 1.6954 4.8340 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6053 -0.2617 -2.1370 33 1 1.7517 -1.7714 -1.2056 34 1 5.1507 -1.1475 -2.6704 35 1 3.7722 -2.2739 -2.6702 36 1 3.6262 -0.6884 -3.4658 37 1 3.6648 -2.0584 0.2385 38 1 5.3270 -1.6206 2.3141 39 1 6.0795 -2.7803 1.1929 40 1 8.7881 1.2453 3.6422 41 1 10.7958 0.3242 2.5549 42 1 10.5877 -1.5369 0.9576 43 1 2.2491 -1.6318 1.1525 44 1 3.2490 -2.3961 4.2417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136009851.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:58 Heat of formation + Delta-G solvation = -73.720586 kcal Electronic energy + Delta-G solvation = -29139.300182 eV Core-core repulsion = 25031.412351 eV Total energy + Delta-G solvation = -4107.887831 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.97942 -41.02549 -39.93095 -38.26210 -37.48566 -35.78619 -34.18252 -33.81946 -32.02763 -31.42254 -30.27040 -28.50930 -27.57726 -25.57273 -23.89636 -23.62872 -22.17016 -21.68587 -20.96783 -19.11184 -18.76184 -18.02230 -17.89080 -17.33996 -16.81167 -16.57799 -16.47224 -15.91818 -15.78454 -15.54283 -15.41026 -14.89551 -14.55630 -14.48627 -14.30093 -14.17431 -13.90821 -13.60511 -13.40983 -13.30209 -13.15119 -12.89132 -12.79039 -12.62047 -12.56199 -12.41933 -12.36926 -12.27979 -12.16808 -11.86464 -11.71740 -11.60424 -11.40733 -10.87609 -10.81606 -9.82426 -9.81307 -9.71912 -8.81813 -7.86530 -5.07642 -0.02805 0.03847 0.99732 1.41326 1.46182 1.49426 1.83111 2.30964 2.58348 2.63323 3.27353 3.48252 3.51325 3.75022 3.79358 3.89249 3.98907 4.15498 4.19632 4.22635 4.38773 4.41974 4.47602 4.57438 4.69973 4.73446 4.83386 4.87369 4.91647 4.95526 5.08134 5.08958 5.10865 5.14082 5.15950 5.17905 5.37056 5.42203 5.59756 5.63578 5.72815 5.81446 6.36690 6.73605 7.43924 7.46535 8.18344 8.45503 9.34629 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.009909 B = 0.005502 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.079874 B = 5088.174656 C = 7058.596897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.026 0.974 4 C -0.119 4.119 5 C 0.147 3.853 6 H 0.052 0.948 7 C -0.150 4.150 8 N -0.692 5.692 9 C 0.535 3.465 10 O -0.587 6.587 11 C -0.107 4.107 12 C -0.104 4.104 13 C 0.084 3.916 14 F -0.150 7.150 15 C -0.152 4.152 16 C -0.069 4.069 17 C -0.116 4.116 18 C -0.012 4.012 19 Cl -0.055 7.055 20 N -0.719 5.719 21 C -0.224 4.224 22 H 0.053 0.947 23 C -0.044 4.044 24 N -0.941 5.941 25 Si 0.932 3.068 26 H -0.292 1.292 27 H -0.297 1.297 28 H -0.289 1.289 29 H 0.048 0.952 30 H 0.028 0.972 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.404 0.596 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.159 0.841 41 H 0.188 0.812 42 H 0.172 0.828 43 H 0.375 0.625 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.325 -1.778 -8.956 14.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 H 0.044 0.956 4 C -0.157 4.157 5 C 0.042 3.958 6 H 0.071 0.929 7 C -0.208 4.208 8 N -0.343 5.343 9 C 0.322 3.678 10 O -0.469 6.469 11 C -0.146 4.146 12 C -0.106 4.106 13 C 0.065 3.935 14 F -0.129 7.129 15 C -0.171 4.171 16 C -0.086 4.086 17 C -0.134 4.134 18 C -0.039 4.039 19 Cl -0.026 7.026 20 N -0.362 5.362 21 C -0.356 4.356 22 H 0.071 0.929 23 C -0.238 4.238 24 N -0.592 5.592 25 Si 0.765 3.235 26 H -0.219 1.219 27 H -0.224 1.224 28 H -0.216 1.216 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.127 0.873 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.241 0.759 38 H 0.121 0.879 39 H 0.131 0.869 40 H 0.177 0.823 41 H 0.205 0.795 42 H 0.190 0.810 43 H 0.210 0.790 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 11.658 -1.112 -9.308 14.960 hybrid contribution -0.799 -0.014 1.766 1.939 sum 10.859 -1.127 -7.542 13.269 Atomic orbital electron populations 1.22263 0.97582 1.01044 1.00377 1.20492 0.92784 0.94783 0.86613 0.95592 1.22120 0.92825 1.02138 0.98640 1.20926 0.93407 0.95751 0.85700 0.92928 1.22086 1.00547 1.01842 0.96316 1.45978 1.17275 1.37301 1.33777 1.20154 0.81661 0.82815 0.83125 1.90581 1.62954 1.32352 1.61013 1.20576 0.93634 1.01156 0.99272 1.19358 0.95336 0.97473 0.98439 1.17957 0.84065 0.95499 0.95998 1.91530 1.53208 1.86198 1.81959 1.21580 0.90187 1.02328 1.03002 1.21413 0.99370 0.94216 0.93624 1.21492 0.95752 0.97104 0.99090 1.20697 0.94345 0.93648 0.95206 1.98349 1.98306 1.45907 1.60061 1.42494 1.78149 1.09966 1.05578 1.19245 1.34482 0.93285 0.88634 0.92917 1.24878 1.03297 0.96587 0.99028 1.69637 1.52489 1.08569 1.28519 0.85762 0.76624 0.78178 0.82980 1.21946 1.22378 1.21561 0.93254 0.95310 0.91236 0.87347 0.90452 0.94330 0.91303 0.89618 0.75898 0.87948 0.86877 0.82350 0.79479 0.81037 0.78998 0.94304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 9.49 71.98 0.68 -4.35 16 2 C 0.16 5.97 2.89 44.99 0.13 6.10 16 3 H 0.03 1.07 8.08 -2.38 -0.02 1.05 16 4 C -0.12 -3.36 4.43 30.60 0.14 -3.23 16 5 C 0.15 4.73 2.58 44.99 0.12 4.85 16 6 H 0.05 2.01 7.57 -2.39 -0.02 2.00 16 7 C -0.15 -3.87 9.49 71.98 0.68 -3.18 16 8 N -0.69 -25.81 3.80 -442.54 -1.68 -27.49 16 9 C 0.54 22.35 7.79 87.66 0.68 23.03 16 10 O -0.59 -27.27 15.69 -3.04 -0.05 -27.31 16 11 C -0.11 -4.26 5.26 29.10 0.15 -4.11 16 12 C -0.10 -3.82 4.38 -19.80 -0.09 -3.91 16 13 C 0.08 3.16 7.24 22.37 0.16 3.32 16 14 F -0.15 -6.87 16.48 44.97 0.74 -6.13 16 15 C -0.15 -4.12 10.03 22.32 0.22 -3.90 16 16 C -0.07 -1.35 10.04 22.26 0.22 -1.13 16 17 C -0.12 -2.55 9.83 22.30 0.22 -2.33 16 18 C -0.01 -0.36 6.31 22.32 0.14 -0.22 16 19 Cl -0.06 -1.50 27.29 -2.72 -0.07 -1.58 16 20 N -0.72 -32.86 3.84 -322.93 -1.24 -34.10 16 21 C -0.22 -12.04 9.93 84.03 0.83 -11.20 16 22 H 0.05 2.93 7.83 -2.91 -0.02 2.91 16 23 C -0.04 -2.42 5.50 84.86 0.47 -1.95 16 24 N -0.94 -51.87 12.74 21.65 0.28 -51.60 16 25 Si 0.93 47.13 29.55 68.60 2.03 49.16 16 26 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 27 H -0.30 -15.21 7.11 99.48 0.71 -14.51 16 28 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.40 15.19 6.51 -92.71 -0.60 14.58 16 38 H 0.10 4.83 7.32 -2.39 -0.02 4.82 16 39 H 0.11 4.03 6.89 -2.39 -0.02 4.01 16 40 H 0.16 3.51 8.06 -2.91 -0.02 3.48 16 41 H 0.19 1.88 8.06 -2.91 -0.02 1.85 16 42 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 43 H 0.38 17.45 5.70 -92.71 -0.53 16.92 16 44 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -68.10 383.44 4.66 -63.43 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: -0.10 Total: 37.83 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 4.77 Total: -2.21 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -2.65 Total: -113.18 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.05 Total: -27.31 kcal Atomic # 9 Polarization: -6.87 SS G_CDS: 0.74 Total: -6.13 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.07 Total: -1.58 kcal Total: -68.10 4.66 -63.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136009851.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.288 kcal (2) G-P(sol) polarization free energy of solvation -68.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds