Wall clock time and date at job start Wed Apr 1 2020 02:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47230 * 2 1 4 4 C 1.53004 * 109.47083 * 119.99972 * 2 1 3 5 5 C 1.53001 * 109.46597 * 184.99970 * 4 2 1 6 6 H 1.09001 * 109.47358 * 304.99607 * 5 4 2 7 7 C 1.53006 * 109.46741 * 185.00235 * 5 4 2 8 8 N 1.46501 * 109.47289 * 65.00393 * 5 4 2 9 9 C 1.34776 * 119.99862 * 204.99636 * 8 5 4 10 10 O 1.21284 * 120.00263 * 359.97438 * 9 8 5 11 11 C 1.50699 * 119.99946 * 180.02562 * 9 8 5 12 12 C 1.50704 * 109.47143 * 179.97438 * 11 9 8 13 13 C 1.38462 * 120.01687 * 89.99542 * 12 11 9 14 14 F 1.35099 * 120.02195 * 0.02562 * 13 12 11 15 15 C 1.38448 * 119.95925 * 179.97438 * 13 12 11 16 16 C 1.38223 * 120.00348 * 0.02562 * 15 13 12 17 17 C 1.38205 * 120.03518 * 359.97438 * 16 15 13 18 18 C 1.38290 * 120.01984 * 269.72482 * 12 11 9 19 19 Cl 1.73597 * 120.00059 * 359.97438 * 18 12 11 20 20 N 1.46493 * 109.47225 * 240.00321 * 2 1 3 21 21 C 1.36936 * 120.00314 * 84.99627 * 20 2 1 22 22 H 1.08001 * 120.00159 * 0.02562 * 21 20 2 23 23 C 1.38811 * 119.99842 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 179.72505 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47054 * 299.99754 * 1 2 3 31 31 H 1.09002 * 109.47269 * 59.99514 * 1 2 3 32 32 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 33 33 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 34 34 H 1.08996 * 109.47103 * 59.99595 * 7 5 4 35 35 H 1.09002 * 109.47467 * 180.02562 * 7 5 4 36 36 H 1.09001 * 109.46682 * 299.99787 * 7 5 4 37 37 H 0.96996 * 120.00462 * 24.99717 * 8 5 4 38 38 H 1.08999 * 109.47089 * 299.99443 * 11 9 8 39 39 H 1.09000 * 109.47120 * 60.00004 * 11 9 8 40 40 H 1.07997 * 119.99542 * 179.97438 * 15 13 12 41 41 H 1.07995 * 119.98076 * 180.02562 * 16 15 13 42 42 H 1.08003 * 119.98057 * 180.02562 * 17 16 15 43 43 H 0.97000 * 120.00040 * 264.99759 * 20 2 1 44 44 H 0.96999 * 119.99889 * 180.27497 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6132 1.3136 6 1 3.9954 -0.9923 0.3867 7 6 4.0852 -1.4383 2.4924 8 7 3.9480 0.7894 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9360 0.4340 0.5739 11 6 5.5555 2.6563 1.2711 12 6 6.9494 2.8681 0.7388 13 6 7.1382 3.2268 -0.5851 14 9 6.0730 3.3877 -1.4004 15 6 8.4193 3.4216 -1.0727 16 6 9.5089 3.2574 -0.2382 17 6 9.3204 2.8994 1.0832 18 6 8.0403 2.7097 1.5738 19 17 7.8044 2.2675 3.2358 20 7 2.0183 -0.6905 -1.1961 21 6 2.1491 -0.0074 -2.3757 22 1 1.8926 1.0406 -2.4242 23 6 2.6113 -0.6619 -3.5092 24 7 2.7318 -0.0066 -4.6443 25 14 3.0543 -2.4747 -3.4257 26 1 4.4886 -2.6177 -3.0685 27 1 2.2186 -3.1415 -2.3951 28 1 2.8080 -3.1059 -4.7471 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6054 -0.2617 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.8001 -2.4819 2.3594 35 1 5.1715 -1.3611 2.5386 36 1 3.6546 -1.0593 3.4193 37 1 3.3285 1.4129 1.9028 38 1 4.8584 3.2956 0.7294 39 1 5.5299 2.9073 2.3315 40 1 8.5673 3.7010 -2.1054 41 1 10.5080 3.4099 -0.6189 42 1 10.1723 2.7718 1.7346 43 1 2.2491 -1.6317 -1.1526 44 1 3.0510 -0.4649 -5.4374 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136009852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:02 Heat of formation + Delta-G solvation = -60.246654 kcal Electronic energy + Delta-G solvation = -28269.405292 eV Core-core repulsion = 24162.101734 eV Total energy + Delta-G solvation = -4107.303558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.85107 -39.97060 -38.93986 -36.93193 -36.64045 -34.53508 -33.12011 -32.09028 -30.80627 -30.53897 -29.20055 -27.63809 -26.37710 -23.31079 -23.00178 -22.63187 -21.09298 -20.25289 -19.78946 -17.84361 -17.62127 -16.95440 -16.93271 -16.26466 -15.65457 -15.43476 -14.92040 -14.85015 -14.63456 -14.13709 -13.87443 -13.72411 -13.52698 -13.38345 -13.16470 -12.99260 -12.61684 -12.49006 -12.33200 -12.13492 -11.95579 -11.71974 -11.67938 -11.52528 -11.49608 -11.18680 -11.02128 -10.86943 -10.62753 -10.46149 -10.25460 -9.92233 -9.64597 -9.50649 -8.94780 -8.85240 -8.79228 -8.72593 -7.18561 -5.68554 -3.03141 0.84329 0.93072 1.85436 2.95446 3.17699 3.43600 3.47781 3.52713 3.56595 4.18238 4.34133 4.58518 4.67593 4.68988 4.94134 5.03062 5.09329 5.20386 5.26393 5.29678 5.36657 5.47718 5.56595 5.62398 5.75206 5.79891 5.84532 5.87022 5.90810 5.93289 6.03283 6.03554 6.21238 6.28035 6.34775 6.45676 6.56758 6.59404 6.77680 6.87094 7.01574 7.77689 8.06615 8.50216 8.54486 9.28834 10.01864 10.20815 11.50114 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.010995 B = 0.004084 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.964857 B = 6855.108314 C = 8231.925504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.177 3.823 3 H 0.055 0.945 4 C -0.134 4.134 5 C 0.144 3.856 6 H 0.099 0.901 7 C -0.161 4.161 8 N -0.716 5.716 9 C 0.523 3.477 10 O -0.526 6.526 11 C -0.110 4.110 12 C -0.090 4.090 13 C 0.132 3.868 14 F -0.120 7.120 15 C -0.149 4.149 16 C -0.080 4.080 17 C -0.125 4.125 18 C 0.003 3.997 19 Cl -0.059 7.059 20 N -0.745 5.745 21 C -0.237 4.237 22 H 0.088 0.912 23 C 0.006 3.994 24 N -0.935 5.935 25 Si 0.880 3.120 26 H -0.283 1.283 27 H -0.278 1.278 28 H -0.292 1.292 29 H 0.044 0.956 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.395 0.605 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.359 0.641 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.793 7.718 18.170 22.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.067 3.933 3 H 0.073 0.927 4 C -0.173 4.173 5 C 0.040 3.960 6 H 0.117 0.883 7 C -0.220 4.220 8 N -0.368 5.368 9 C 0.308 3.692 10 O -0.401 6.401 11 C -0.150 4.150 12 C -0.092 4.092 13 C 0.113 3.887 14 F -0.098 7.098 15 C -0.168 4.168 16 C -0.098 4.098 17 C -0.144 4.144 18 C -0.024 4.024 19 Cl -0.030 7.030 20 N -0.388 5.388 21 C -0.366 4.366 22 H 0.106 0.894 23 C -0.189 4.189 24 N -0.583 5.583 25 Si 0.710 3.290 26 H -0.210 1.210 27 H -0.204 1.204 28 H -0.219 1.219 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.229 0.771 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.156 0.844 43 H 0.192 0.808 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.294 7.278 17.723 21.750 hybrid contribution -0.297 -1.074 0.005 1.114 sum 9.997 6.204 17.729 21.278 Atomic orbital electron populations 1.22424 0.99044 1.00793 1.00293 1.20194 0.91712 0.95850 0.85523 0.92742 1.22218 0.93844 1.02101 0.99143 1.20982 0.94943 0.80531 0.99550 0.88342 1.22190 1.01673 0.99964 0.98142 1.45874 1.16418 1.11478 1.63008 1.20074 0.82051 0.89167 0.77931 1.90732 1.50985 1.56228 1.42146 1.20663 0.93891 0.96407 1.04011 1.19103 0.94928 1.02801 0.92407 1.17350 0.84305 0.99846 0.87242 1.91612 1.54331 1.92494 1.71370 1.21279 0.90774 1.02997 1.01749 1.20923 0.98942 0.97563 0.92420 1.21021 0.95274 1.01674 0.96413 1.20446 0.93863 1.01888 0.86162 1.98364 1.97236 1.91178 1.16264 1.42776 1.79670 1.09209 1.07186 1.18998 1.36632 0.95335 0.85681 0.89445 1.24621 1.01426 0.97268 0.95616 1.69699 1.53013 1.35465 1.00091 0.86620 0.78663 0.87080 0.76622 1.20994 1.20411 1.21894 0.93680 0.94390 0.92431 0.91538 0.90798 0.91936 0.92405 0.92940 0.77107 0.87127 0.87335 0.83898 0.84098 0.84387 0.80801 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.49 37.16 0.35 -2.45 16 2 C 0.18 3.24 2.84 -67.93 -0.19 3.04 16 3 H 0.05 1.04 7.56 -51.92 -0.39 0.65 16 4 C -0.13 -1.93 4.29 -26.73 -0.11 -2.04 16 5 C 0.14 2.24 2.52 -67.93 -0.17 2.07 16 6 H 0.10 2.00 7.06 -51.93 -0.37 1.63 16 7 C -0.16 -2.12 9.48 37.16 0.35 -1.77 16 8 N -0.72 -10.21 4.45 -53.80 -0.24 -10.45 16 9 C 0.52 8.57 7.79 -10.99 -0.09 8.49 16 10 O -0.53 -10.98 15.70 5.55 0.09 -10.89 16 11 C -0.11 -1.43 5.26 -29.03 -0.15 -1.58 16 12 C -0.09 -1.26 4.38 -104.52 -0.46 -1.72 16 13 C 0.13 1.96 7.24 -39.42 -0.29 1.68 16 14 F -0.12 -2.10 16.48 2.25 0.04 -2.06 16 15 C -0.15 -1.78 10.03 -39.51 -0.40 -2.18 16 16 C -0.08 -0.78 10.04 -39.60 -0.40 -1.17 16 17 C -0.12 -1.28 9.83 -39.54 -0.39 -1.67 16 18 C 0.00 0.04 6.31 -39.51 -0.25 -0.21 16 19 Cl -0.06 -0.66 27.29 -51.86 -1.42 -2.07 16 20 N -0.75 -17.56 4.30 -53.43 -0.23 -17.79 16 21 C -0.24 -6.76 10.41 -15.06 -0.16 -6.91 16 22 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 23 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -30.20 13.97 55.49 0.78 -29.42 16 25 Si 0.88 23.11 27.74 -169.99 -4.72 18.39 16 26 H -0.28 -7.59 7.11 56.52 0.40 -7.19 16 27 H -0.28 -6.80 6.51 56.52 0.37 -6.44 16 28 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.40 4.34 8.60 -40.82 -0.35 3.99 16 38 H 0.11 1.34 7.64 -51.93 -0.40 0.95 16 39 H 0.11 1.10 6.89 -51.93 -0.36 0.74 16 40 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 42 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 43 H 0.36 8.49 5.65 -40.82 -0.23 8.26 16 44 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 LS Contribution 385.14 15.07 5.80 5.80 Total: -1.00 -35.87 385.14 -8.67 -44.54 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -6.34 Total: 10.26 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -2.44 Total: -6.32 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.31 Total: -57.66 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.72 Total: 18.39 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.42 Total: -2.07 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.87 -8.67 -44.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136009852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.703 kcal (2) G-P(sol) polarization free energy of solvation -35.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds