Wall clock time and date at job start Wed Apr 1 2020 02:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47230 * 2 1 4 4 C 1.53004 * 109.47083 * 119.99972 * 2 1 3 5 5 C 1.53001 * 109.46597 * 184.99970 * 4 2 1 6 6 H 1.09001 * 109.47358 * 304.99607 * 5 4 2 7 7 C 1.53006 * 109.46741 * 185.00235 * 5 4 2 8 8 N 1.46501 * 109.47289 * 65.00393 * 5 4 2 9 9 C 1.34776 * 119.99862 * 204.99636 * 8 5 4 10 10 O 1.21284 * 120.00263 * 359.97438 * 9 8 5 11 11 C 1.50699 * 119.99946 * 180.02562 * 9 8 5 12 12 C 1.50704 * 109.47143 * 179.97438 * 11 9 8 13 13 C 1.38462 * 120.01687 * 89.99542 * 12 11 9 14 14 F 1.35099 * 120.02195 * 0.02562 * 13 12 11 15 15 C 1.38448 * 119.95925 * 179.97438 * 13 12 11 16 16 C 1.38223 * 120.00348 * 0.02562 * 15 13 12 17 17 C 1.38205 * 120.03518 * 359.97438 * 16 15 13 18 18 C 1.38290 * 120.01984 * 269.72482 * 12 11 9 19 19 Cl 1.73597 * 120.00059 * 359.97438 * 18 12 11 20 20 N 1.46493 * 109.47225 * 240.00321 * 2 1 3 21 21 C 1.36936 * 120.00314 * 84.99627 * 20 2 1 22 22 H 1.08001 * 120.00159 * 0.02562 * 21 20 2 23 23 C 1.38811 * 119.99842 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 179.72505 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47054 * 299.99754 * 1 2 3 31 31 H 1.09002 * 109.47269 * 59.99514 * 1 2 3 32 32 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 33 33 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 34 34 H 1.08996 * 109.47103 * 59.99595 * 7 5 4 35 35 H 1.09002 * 109.47467 * 180.02562 * 7 5 4 36 36 H 1.09001 * 109.46682 * 299.99787 * 7 5 4 37 37 H 0.96996 * 120.00462 * 24.99717 * 8 5 4 38 38 H 1.08999 * 109.47089 * 299.99443 * 11 9 8 39 39 H 1.09000 * 109.47120 * 60.00004 * 11 9 8 40 40 H 1.07997 * 119.99542 * 179.97438 * 15 13 12 41 41 H 1.07995 * 119.98076 * 180.02562 * 16 15 13 42 42 H 1.08003 * 119.98057 * 180.02562 * 17 16 15 43 43 H 0.97000 * 120.00040 * 264.99759 * 20 2 1 44 44 H 0.96999 * 119.99889 * 180.27497 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6132 1.3136 6 1 3.9954 -0.9923 0.3867 7 6 4.0852 -1.4383 2.4924 8 7 3.9480 0.7894 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9360 0.4340 0.5739 11 6 5.5555 2.6563 1.2711 12 6 6.9494 2.8681 0.7388 13 6 7.1382 3.2268 -0.5851 14 9 6.0730 3.3877 -1.4004 15 6 8.4193 3.4216 -1.0727 16 6 9.5089 3.2574 -0.2382 17 6 9.3204 2.8994 1.0832 18 6 8.0403 2.7097 1.5738 19 17 7.8044 2.2675 3.2358 20 7 2.0183 -0.6905 -1.1961 21 6 2.1491 -0.0074 -2.3757 22 1 1.8926 1.0406 -2.4242 23 6 2.6113 -0.6619 -3.5092 24 7 2.7318 -0.0066 -4.6443 25 14 3.0543 -2.4747 -3.4257 26 1 4.4886 -2.6177 -3.0685 27 1 2.2186 -3.1415 -2.3951 28 1 2.8080 -3.1059 -4.7471 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6054 -0.2617 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.8001 -2.4819 2.3594 35 1 5.1715 -1.3611 2.5386 36 1 3.6546 -1.0593 3.4193 37 1 3.3285 1.4129 1.9028 38 1 4.8584 3.2956 0.7294 39 1 5.5299 2.9073 2.3315 40 1 8.5673 3.7010 -2.1054 41 1 10.5080 3.4099 -0.6189 42 1 10.1723 2.7718 1.7346 43 1 2.2491 -1.6317 -1.1526 44 1 3.0510 -0.4649 -5.4374 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136009852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:01 Heat of formation + Delta-G solvation = -83.882065 kcal Electronic energy + Delta-G solvation = -28270.430200 eV Core-core repulsion = 24162.101734 eV Total energy + Delta-G solvation = -4108.328466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.05164 -41.13449 -39.97540 -38.40036 -37.52174 -36.12581 -34.23163 -33.99716 -32.16275 -31.45326 -30.97871 -28.64080 -27.60196 -25.36260 -23.95555 -23.69331 -22.29916 -21.58727 -21.25974 -19.72871 -18.82956 -18.22362 -17.95423 -17.40654 -16.84392 -16.66469 -16.49784 -16.11376 -15.82040 -15.77673 -15.29413 -14.99157 -14.66374 -14.60302 -14.46304 -14.34021 -14.02134 -14.00752 -13.52129 -13.42566 -13.20397 -13.03012 -12.85049 -12.68933 -12.63408 -12.47511 -12.39735 -12.30818 -12.02625 -11.91150 -11.88977 -11.69817 -11.44293 -11.00160 -10.94056 -9.98666 -9.88257 -9.75250 -9.27580 -8.02133 -5.31990 -0.06604 -0.01302 0.95238 1.29876 1.36779 1.40733 1.69101 2.17550 2.46494 2.52538 3.22149 3.31137 3.36252 3.64851 3.66837 3.78207 3.86222 3.98114 4.10705 4.18834 4.31013 4.33847 4.38469 4.50378 4.52878 4.66178 4.76579 4.81948 4.84800 4.90416 5.00152 5.00660 5.06031 5.07243 5.17353 5.21464 5.32459 5.38354 5.59795 5.64089 5.68131 5.79374 6.22863 6.62135 7.10525 7.34756 7.89313 8.04693 9.20255 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.010995 B = 0.004084 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.964857 B = 6855.108314 C = 8231.925504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.166 3.834 3 H 0.042 0.958 4 C -0.120 4.120 5 C 0.142 3.858 6 H 0.045 0.955 7 C -0.150 4.150 8 N -0.706 5.706 9 C 0.515 3.485 10 O -0.577 6.577 11 C -0.104 4.104 12 C -0.108 4.108 13 C 0.089 3.911 14 F -0.149 7.149 15 C -0.156 4.156 16 C -0.069 4.069 17 C -0.119 4.119 18 C -0.009 4.009 19 Cl -0.050 7.050 20 N -0.749 5.749 21 C -0.212 4.212 22 H 0.053 0.947 23 C -0.067 4.067 24 N -0.986 5.986 25 Si 0.945 3.055 26 H -0.294 1.294 27 H -0.245 1.245 28 H -0.295 1.295 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.024 0.976 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.036 0.964 36 H 0.082 0.918 37 H 0.413 0.587 38 H 0.112 0.888 39 H 0.138 0.862 40 H 0.154 0.846 41 H 0.182 0.818 42 H 0.170 0.830 43 H 0.361 0.639 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.137 6.933 21.687 24.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.058 3.942 3 H 0.060 0.940 4 C -0.158 4.158 5 C 0.038 3.962 6 H 0.064 0.936 7 C -0.209 4.209 8 N -0.358 5.358 9 C 0.302 3.698 10 O -0.457 6.457 11 C -0.144 4.144 12 C -0.111 4.111 13 C 0.069 3.931 14 F -0.127 7.127 15 C -0.175 4.175 16 C -0.087 4.087 17 C -0.137 4.137 18 C -0.036 4.036 19 Cl -0.021 7.021 20 N -0.392 5.392 21 C -0.343 4.343 22 H 0.071 0.929 23 C -0.258 4.258 24 N -0.638 5.638 25 Si 0.774 3.226 26 H -0.221 1.221 27 H -0.170 1.170 28 H -0.222 1.222 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.044 0.956 32 H 0.130 0.870 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.101 0.899 37 H 0.250 0.750 38 H 0.130 0.870 39 H 0.155 0.845 40 H 0.172 0.828 41 H 0.199 0.801 42 H 0.187 0.813 43 H 0.194 0.806 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.569 6.507 21.335 24.683 hybrid contribution -0.378 -0.710 -0.994 1.279 sum 10.192 5.797 20.340 23.478 Atomic orbital electron populations 1.22281 0.97201 1.01342 1.00807 1.20522 0.92873 0.95404 0.85353 0.93952 1.22138 0.92647 1.02655 0.98390 1.20902 0.95675 0.81235 0.98434 0.93620 1.22081 1.00392 1.00257 0.98136 1.45826 1.16145 1.11651 1.62223 1.20665 0.82050 0.90117 0.76972 1.90698 1.52634 1.57812 1.44522 1.20675 0.93895 0.94034 1.05758 1.19251 0.95817 1.03519 0.92468 1.17861 0.84721 1.02624 0.87858 1.91527 1.55825 1.93129 1.72264 1.21592 0.90370 1.02665 1.02853 1.21399 0.99919 0.95531 0.91837 1.21491 0.95395 0.99770 0.97043 1.20658 0.94261 1.02095 0.86580 1.98359 1.97280 1.91123 1.15358 1.42830 1.79903 1.09276 1.07231 1.18953 1.33869 0.94042 0.87462 0.92904 1.25397 1.02901 1.02005 0.95462 1.69879 1.55544 1.37422 1.00967 0.85539 0.77968 0.81911 0.77185 1.22126 1.16967 1.22163 0.93066 0.90199 0.95625 0.86980 0.89664 0.90875 0.94443 0.89878 0.75009 0.86979 0.84454 0.82802 0.80052 0.81300 0.80617 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.91 9.49 71.98 0.68 -4.23 16 2 C 0.17 5.83 2.84 44.99 0.13 5.96 16 3 H 0.04 1.59 7.56 -2.38 -0.02 1.57 16 4 C -0.12 -3.04 4.29 30.60 0.13 -2.91 16 5 C 0.14 4.22 2.52 44.99 0.11 4.33 16 6 H 0.05 1.87 7.06 -2.39 -0.02 1.86 16 7 C -0.15 -3.58 9.48 71.98 0.68 -2.89 16 8 N -0.71 -19.46 4.45 -442.52 -1.97 -21.43 16 9 C 0.52 17.17 7.79 87.66 0.68 17.85 16 10 O -0.58 -25.07 15.70 -3.04 -0.05 -25.12 16 11 C -0.10 -2.73 5.26 29.10 0.15 -2.58 16 12 C -0.11 -3.08 4.38 -19.80 -0.09 -3.16 16 13 C 0.09 2.77 7.24 22.37 0.16 2.93 16 14 F -0.15 -5.66 16.48 44.97 0.74 -4.92 16 15 C -0.16 -3.74 10.03 22.32 0.22 -3.52 16 16 C -0.07 -1.19 10.04 22.26 0.22 -0.97 16 17 C -0.12 -2.17 9.83 22.30 0.22 -1.95 16 18 C -0.01 -0.21 6.31 22.32 0.14 -0.07 16 19 Cl -0.05 -1.03 27.29 -2.72 -0.07 -1.11 16 20 N -0.75 -35.22 4.30 -322.94 -1.39 -36.61 16 21 C -0.21 -12.50 10.41 84.03 0.87 -11.63 16 22 H 0.05 3.43 8.06 -2.91 -0.02 3.41 16 23 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 24 N -0.99 -66.64 13.97 21.65 0.30 -66.34 16 25 Si 0.95 48.94 27.74 68.60 1.90 50.84 16 26 H -0.29 -15.62 7.11 99.48 0.71 -14.91 16 27 H -0.25 -11.22 6.51 99.48 0.65 -10.58 16 28 H -0.29 -15.28 7.11 99.48 0.71 -14.57 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.41 8.19 8.60 -92.71 -0.80 7.40 16 38 H 0.11 2.85 7.64 -2.39 -0.02 2.83 16 39 H 0.14 2.64 6.89 -2.39 -0.02 2.63 16 40 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 41 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 43 H 0.36 16.69 5.65 -92.71 -0.52 16.17 16 44 H 0.25 16.45 8.31 -92.71 -0.77 15.68 16 Total: -1.00 -84.73 385.14 3.92 -80.81 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: -0.35 Total: 30.41 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 4.80 Total: -6.53 kcal Atomic # 7 Polarization: -121.33 SS G_CDS: -3.05 Total: -124.38 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.05 Total: -25.12 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.74 Total: -4.92 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 1.90 Total: 50.84 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.07 Total: -1.11 kcal Total: -84.73 3.92 -80.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136009852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.073 kcal (2) G-P(sol) polarization free energy of solvation -84.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds