Wall clock time and date at job start Wed Apr 1 2020 02:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46904 * 2 1 4 4 C 1.52995 * 109.46992 * 240.00319 * 2 1 3 5 5 C 1.52996 * 109.47347 * 174.99943 * 4 2 1 6 6 H 1.09002 * 109.46707 * 305.00151 * 5 4 2 7 7 C 1.53001 * 109.47463 * 185.00005 * 5 4 2 8 8 N 1.46505 * 109.46832 * 64.99621 * 5 4 2 9 9 C 1.36940 * 119.99541 * 205.00366 * 8 5 4 10 10 H 1.07996 * 120.00116 * 0.02562 * 9 8 5 11 11 C 1.38818 * 119.99440 * 180.02562 * 9 8 5 12 12 N 1.31621 * 120.00186 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99728 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47169 * 359.97438 * 13 11 9 15 15 H 1.48509 * 109.47161 * 119.99377 * 13 11 9 16 16 H 1.48497 * 109.47088 * 239.99206 * 13 11 9 17 17 N 1.46496 * 109.47097 * 120.00260 * 2 1 3 18 18 C 1.34778 * 120.00061 * 274.99964 * 17 2 1 19 19 O 1.21286 * 120.00067 * 0.02562 * 18 17 2 20 20 C 1.50702 * 120.00103 * 179.97438 * 18 17 2 21 21 C 1.50700 * 109.46935 * 180.02562 * 20 18 17 22 22 C 1.38466 * 120.01832 * 269.97827 * 21 20 18 23 23 F 1.35101 * 120.01808 * 0.04767 * 22 21 20 24 24 C 1.38445 * 119.96099 * 180.02562 * 22 21 20 25 25 C 1.38225 * 120.00206 * 359.97438 * 24 22 21 26 26 C 1.38210 * 120.03730 * 359.76374 * 25 24 22 27 27 C 1.38292 * 120.01947 * 90.00695 * 21 20 18 28 28 Cl 1.73599 * 119.99847 * 359.97298 * 27 21 20 29 29 H 1.08997 * 109.47200 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47142 * 299.99730 * 1 2 3 31 31 H 1.09001 * 109.47041 * 59.99555 * 1 2 3 32 32 H 1.09003 * 109.47399 * 294.99851 * 4 2 1 33 33 H 1.09006 * 109.47275 * 54.99763 * 4 2 1 34 34 H 1.08999 * 109.46791 * 299.99873 * 7 5 4 35 35 H 1.08995 * 109.47101 * 60.00147 * 7 5 4 36 36 H 1.09004 * 109.46738 * 180.02562 * 7 5 4 37 37 H 0.96991 * 119.99918 * 25.00707 * 8 5 4 38 38 H 0.96992 * 119.99852 * 180.02562 * 12 11 9 39 39 H 0.97000 * 119.99845 * 94.99790 * 17 2 1 40 40 H 1.09002 * 109.46737 * 60.00053 * 20 18 17 41 41 H 1.08994 * 109.47109 * 300.00424 * 20 18 17 42 42 H 1.08004 * 119.99993 * 180.02562 * 24 22 21 43 43 H 1.07994 * 119.98452 * 180.02562 * 25 24 22 44 44 H 1.07997 * 119.97969 * 180.26108 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4359 -1.2678 7 6 4.0645 -1.2249 -2.6242 8 7 4.1537 -1.3342 -0.1824 9 6 5.3943 -0.9855 0.2806 10 1 5.9385 -0.1788 -0.1880 11 6 5.9525 -1.6689 1.3522 12 7 5.2890 -2.6517 1.9235 13 14 7.6452 -1.1938 1.9834 14 1 8.1764 -0.0668 1.1754 15 1 7.5447 -0.7794 3.4059 16 1 8.5603 -2.3579 1.8704 17 7 2.0184 -0.6906 1.1961 18 6 2.1471 -0.0183 2.3571 19 8 1.8582 1.1583 2.4118 20 6 2.6489 -0.7290 3.5877 21 6 2.6991 0.2393 4.7414 22 6 3.8485 0.9735 4.9800 23 9 4.9253 0.8231 4.1781 24 6 3.8935 1.8623 6.0406 25 6 2.7913 2.0166 6.8603 26 6 1.6421 1.2877 6.6189 27 6 1.5974 0.3945 5.5629 28 17 0.1559 -0.5257 5.2646 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7517 -1.7715 -1.2057 33 1 1.6054 -0.2616 -2.1370 34 1 3.7723 -2.2740 -2.6701 35 1 3.6264 -0.6885 -3.4658 36 1 5.1509 -1.1483 -2.6698 37 1 3.6648 -2.0584 0.2385 38 1 5.6789 -3.1290 2.6725 39 1 2.2491 -1.6318 1.1525 40 1 3.6480 -1.1215 3.3985 41 1 1.9761 -1.5507 3.8325 42 1 4.7896 2.4357 6.2270 43 1 2.8266 2.7103 7.6872 44 1 0.7800 1.4121 7.2574 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136009853.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:05 Heat of formation + Delta-G solvation = -57.968435 kcal Electronic energy + Delta-G solvation = -29134.704570 eV Core-core repulsion = 25027.499804 eV Total energy + Delta-G solvation = -4107.204767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.52410 -39.62224 -38.67623 -36.72034 -36.37346 -34.14352 -32.73632 -32.15760 -30.55181 -30.30134 -28.55802 -27.21282 -26.27725 -23.63295 -22.73880 -22.38299 -20.83335 -20.19203 -19.43536 -17.52915 -17.16136 -16.61898 -16.50312 -15.99667 -15.45756 -15.11689 -14.80512 -14.59223 -14.37679 -13.80833 -13.72905 -13.46744 -13.31028 -13.15225 -12.93703 -12.69522 -12.61410 -12.19586 -12.06128 -11.89899 -11.71069 -11.63500 -11.30017 -11.23049 -11.18549 -10.94318 -10.80175 -10.70723 -10.69687 -10.32993 -10.19190 -9.86360 -9.65598 -9.26558 -8.92901 -8.65952 -8.52258 -8.28602 -6.92015 -5.78673 -3.04037 1.09273 1.19265 2.12617 3.39268 3.45627 3.49530 3.52833 3.54022 3.97881 4.45498 4.62416 4.71717 4.90744 4.93294 5.13328 5.25923 5.41723 5.48414 5.51710 5.57763 5.66882 5.71351 5.75212 5.92274 5.97646 6.01326 6.04594 6.10762 6.17189 6.19210 6.22509 6.27399 6.40136 6.44835 6.49787 6.59723 6.63763 6.85694 6.88482 7.08080 7.25598 7.73491 8.26154 8.41233 8.98474 9.53273 10.06692 10.42560 11.43913 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.009912 B = 0.005494 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.296172 B = 5095.469908 C = 7070.914941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.151 3.849 3 H 0.081 0.919 4 C -0.133 4.133 5 C 0.169 3.831 6 H 0.047 0.953 7 C -0.163 4.163 8 N -0.716 5.716 9 C -0.224 4.224 10 H 0.067 0.933 11 C -0.008 4.008 12 N -0.934 5.934 13 Si 0.894 3.106 14 H -0.283 1.283 15 H -0.288 1.288 16 H -0.295 1.295 17 N -0.696 5.696 18 C 0.540 3.460 19 O -0.560 6.560 20 C -0.116 4.116 21 C -0.078 4.078 22 C 0.131 3.869 23 F -0.117 7.117 24 C -0.155 4.155 25 C -0.086 4.086 26 C -0.127 4.127 27 C 0.001 3.999 28 Cl -0.061 7.061 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.045 0.955 35 H 0.035 0.965 36 H 0.052 0.948 37 H 0.378 0.622 38 H 0.253 0.747 39 H 0.405 0.595 40 H 0.137 0.863 41 H 0.102 0.898 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.091 4.575 5.687 12.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.046 3.954 3 H 0.099 0.901 4 C -0.172 4.172 5 C 0.059 3.941 6 H 0.065 0.935 7 C -0.223 4.223 8 N -0.359 5.359 9 C -0.355 4.355 10 H 0.085 0.915 11 C -0.203 4.203 12 N -0.584 5.584 13 Si 0.726 3.274 14 H -0.209 1.209 15 H -0.215 1.215 16 H -0.222 1.222 17 N -0.348 5.348 18 C 0.327 3.673 19 O -0.439 6.439 20 C -0.155 4.155 21 C -0.080 4.080 22 C 0.111 3.889 23 F -0.095 7.095 24 C -0.174 4.174 25 C -0.105 4.105 26 C -0.146 4.146 27 C -0.025 4.025 28 Cl -0.032 7.032 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.213 0.787 38 H 0.063 0.937 39 H 0.242 0.758 40 H 0.155 0.845 41 H 0.120 0.880 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.216 5.393 5.672 12.870 hybrid contribution 1.177 -0.649 0.245 1.366 sum -9.040 4.744 5.918 11.800 Atomic orbital electron populations 1.22203 0.96421 1.01537 1.01836 1.20773 0.92369 0.97664 0.84607 0.90065 1.22201 0.97785 1.00591 0.96594 1.20278 0.89720 0.95853 0.88203 0.93497 1.22419 1.01499 1.00326 0.98084 1.42457 1.18699 1.39958 1.34808 1.19231 0.93155 1.12808 1.10334 0.91531 1.24524 0.98267 0.98586 0.98893 1.69591 1.37914 1.24747 1.26175 0.86296 0.84787 0.77340 0.78986 1.20864 1.21514 1.22233 1.45887 1.66006 1.14386 1.08536 1.19920 0.76335 0.86774 0.84299 1.90622 1.51589 1.16075 1.85612 1.20744 1.07384 0.97026 0.90354 1.19323 0.91987 0.99202 0.97488 1.17408 0.84066 0.96876 0.90567 1.91639 1.52127 1.94118 1.71584 1.21215 1.00804 0.99814 0.95537 1.20833 0.91744 0.98836 0.99066 1.20971 0.99411 0.96728 0.97519 1.20482 0.87921 0.96916 0.97227 1.98355 1.36435 1.72653 1.95751 0.92873 0.92439 0.92278 0.91759 0.90930 0.93625 0.94640 0.92904 0.78724 0.93734 0.75762 0.84523 0.88024 0.84354 0.84422 0.84635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.48 37.16 0.35 -1.89 16 2 C 0.15 2.48 2.57 -67.93 -0.17 2.31 16 3 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 4 C -0.13 -2.02 4.43 -26.74 -0.12 -2.14 16 5 C 0.17 3.17 2.89 -67.93 -0.20 2.97 16 6 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 7 C -0.16 -2.81 9.49 37.16 0.35 -2.46 16 8 N -0.72 -16.09 3.84 -53.42 -0.21 -16.29 16 9 C -0.22 -5.83 9.93 -15.06 -0.15 -5.98 16 10 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 12 N -0.93 -24.97 12.78 55.49 0.71 -24.26 16 13 Si 0.89 22.16 29.55 -169.99 -5.02 17.13 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 17 N -0.70 -12.71 3.80 -53.80 -0.20 -12.91 16 18 C 0.54 10.84 7.79 -10.98 -0.09 10.75 16 19 O -0.56 -12.51 15.70 5.55 0.09 -12.43 16 20 C -0.12 -2.19 5.26 -29.03 -0.15 -2.35 16 21 C -0.08 -1.39 4.38 -104.52 -0.46 -1.85 16 22 C 0.13 2.37 7.24 -39.42 -0.29 2.09 16 23 F -0.12 -2.50 16.48 2.25 0.04 -2.46 16 24 C -0.15 -2.19 10.03 -39.51 -0.40 -2.59 16 25 C -0.09 -1.01 10.04 -39.60 -0.40 -1.41 16 26 C -0.13 -1.59 9.83 -39.54 -0.39 -1.98 16 27 C 0.00 0.02 6.31 -39.51 -0.25 -0.23 16 28 Cl -0.06 -0.86 27.29 -51.86 -1.42 -2.27 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.38 8.66 5.70 -40.82 -0.23 8.42 16 38 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 39 H 0.40 7.46 6.51 -40.82 -0.27 7.20 16 40 H 0.14 3.00 7.37 -51.93 -0.38 2.62 16 41 H 0.10 1.72 6.90 -51.93 -0.36 1.36 16 42 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 43 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 383.54 15.07 5.78 5.78 Total: -1.00 -29.41 383.54 -8.93 -38.34 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -6.25 Total: 14.43 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -2.44 Total: -5.06 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.30 Total: -53.46 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.09 Total: -12.43 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.42 Total: -2.27 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.41 -8.93 -38.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136009853.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.626 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds