Wall clock time and date at job start Wed Apr 1 2020 02:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46904 * 2 1 4 4 C 1.52995 * 109.46992 * 240.00319 * 2 1 3 5 5 C 1.52996 * 109.47347 * 174.99943 * 4 2 1 6 6 H 1.09002 * 109.46707 * 305.00151 * 5 4 2 7 7 C 1.53001 * 109.47463 * 185.00005 * 5 4 2 8 8 N 1.46505 * 109.46832 * 64.99621 * 5 4 2 9 9 C 1.36940 * 119.99541 * 205.00366 * 8 5 4 10 10 H 1.07996 * 120.00116 * 0.02562 * 9 8 5 11 11 C 1.38818 * 119.99440 * 180.02562 * 9 8 5 12 12 N 1.31621 * 120.00186 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99728 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47169 * 359.97438 * 13 11 9 15 15 H 1.48509 * 109.47161 * 119.99377 * 13 11 9 16 16 H 1.48497 * 109.47088 * 239.99206 * 13 11 9 17 17 N 1.46496 * 109.47097 * 120.00260 * 2 1 3 18 18 C 1.34778 * 120.00061 * 274.99964 * 17 2 1 19 19 O 1.21286 * 120.00067 * 0.02562 * 18 17 2 20 20 C 1.50702 * 120.00103 * 179.97438 * 18 17 2 21 21 C 1.50700 * 109.46935 * 180.02562 * 20 18 17 22 22 C 1.38466 * 120.01832 * 269.97827 * 21 20 18 23 23 F 1.35101 * 120.01808 * 0.04767 * 22 21 20 24 24 C 1.38445 * 119.96099 * 180.02562 * 22 21 20 25 25 C 1.38225 * 120.00206 * 359.97438 * 24 22 21 26 26 C 1.38210 * 120.03730 * 359.76374 * 25 24 22 27 27 C 1.38292 * 120.01947 * 90.00695 * 21 20 18 28 28 Cl 1.73599 * 119.99847 * 359.97298 * 27 21 20 29 29 H 1.08997 * 109.47200 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47142 * 299.99730 * 1 2 3 31 31 H 1.09001 * 109.47041 * 59.99555 * 1 2 3 32 32 H 1.09003 * 109.47399 * 294.99851 * 4 2 1 33 33 H 1.09006 * 109.47275 * 54.99763 * 4 2 1 34 34 H 1.08999 * 109.46791 * 299.99873 * 7 5 4 35 35 H 1.08995 * 109.47101 * 60.00147 * 7 5 4 36 36 H 1.09004 * 109.46738 * 180.02562 * 7 5 4 37 37 H 0.96991 * 119.99918 * 25.00707 * 8 5 4 38 38 H 0.96992 * 119.99852 * 180.02562 * 12 11 9 39 39 H 0.97000 * 119.99845 * 94.99790 * 17 2 1 40 40 H 1.09002 * 109.46737 * 60.00053 * 20 18 17 41 41 H 1.08994 * 109.47109 * 300.00424 * 20 18 17 42 42 H 1.08004 * 119.99993 * 180.02562 * 24 22 21 43 43 H 1.07994 * 119.98452 * 180.02562 * 25 24 22 44 44 H 1.07997 * 119.97969 * 180.26108 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4359 -1.2678 7 6 4.0645 -1.2249 -2.6242 8 7 4.1537 -1.3342 -0.1824 9 6 5.3943 -0.9855 0.2806 10 1 5.9385 -0.1788 -0.1880 11 6 5.9525 -1.6689 1.3522 12 7 5.2890 -2.6517 1.9235 13 14 7.6452 -1.1938 1.9834 14 1 8.1764 -0.0668 1.1754 15 1 7.5447 -0.7794 3.4059 16 1 8.5603 -2.3579 1.8704 17 7 2.0184 -0.6906 1.1961 18 6 2.1471 -0.0183 2.3571 19 8 1.8582 1.1583 2.4118 20 6 2.6489 -0.7290 3.5877 21 6 2.6991 0.2393 4.7414 22 6 3.8485 0.9735 4.9800 23 9 4.9253 0.8231 4.1781 24 6 3.8935 1.8623 6.0406 25 6 2.7913 2.0166 6.8603 26 6 1.6421 1.2877 6.6189 27 6 1.5974 0.3945 5.5629 28 17 0.1559 -0.5257 5.2646 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7517 -1.7715 -1.2057 33 1 1.6054 -0.2616 -2.1370 34 1 3.7723 -2.2740 -2.6701 35 1 3.6264 -0.6885 -3.4658 36 1 5.1509 -1.1483 -2.6698 37 1 3.6648 -2.0584 0.2385 38 1 5.6789 -3.1290 2.6725 39 1 2.2491 -1.6318 1.1525 40 1 3.6480 -1.1215 3.3985 41 1 1.9761 -1.5507 3.8325 42 1 4.7896 2.4357 6.2270 43 1 2.8266 2.7103 7.6872 44 1 0.7800 1.4121 7.2574 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136009853.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:04 Heat of formation + Delta-G solvation = -73.796600 kcal Electronic energy + Delta-G solvation = -29135.390931 eV Core-core repulsion = 25027.499804 eV Total energy + Delta-G solvation = -4107.891127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.97830 -41.02644 -39.93156 -38.26253 -37.48612 -35.78607 -34.18131 -33.82114 -32.02712 -31.42333 -30.27068 -28.51082 -27.57777 -25.57403 -23.89732 -23.62904 -22.17129 -21.68569 -20.96808 -19.11223 -18.76124 -18.02347 -17.89131 -17.34077 -16.81253 -16.57296 -16.47645 -15.91923 -15.78380 -15.53554 -15.41359 -14.89639 -14.55744 -14.48655 -14.30089 -14.17660 -13.90842 -13.60330 -13.41202 -13.30198 -13.15140 -12.90049 -12.79737 -12.60877 -12.56362 -12.41966 -12.36948 -12.27925 -12.13369 -11.86639 -11.71905 -11.60585 -11.40572 -10.88138 -10.81660 -9.82617 -9.81216 -9.71982 -8.81748 -7.86591 -5.07660 -0.02931 0.03689 0.99621 1.41466 1.47662 1.49986 1.83112 2.30719 2.58521 2.63267 3.27423 3.48402 3.51155 3.74827 3.79347 3.89096 3.98841 4.15416 4.19600 4.22470 4.38697 4.41802 4.47383 4.57405 4.69924 4.73130 4.83343 4.87308 4.91588 4.95388 5.08091 5.08870 5.10685 5.14092 5.15892 5.17746 5.37014 5.42187 5.60063 5.63591 5.72694 5.81422 6.36711 6.73534 7.43848 7.46561 8.18360 8.45506 9.34741 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.009912 B = 0.005494 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.296172 B = 5095.469908 C = 7070.914941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.147 3.853 3 H 0.053 0.947 4 C -0.119 4.119 5 C 0.162 3.838 6 H 0.026 0.974 7 C -0.153 4.153 8 N -0.719 5.719 9 C -0.223 4.223 10 H 0.053 0.947 11 C -0.045 4.045 12 N -0.941 5.941 13 Si 0.931 3.069 14 H -0.284 1.284 15 H -0.298 1.298 16 H -0.295 1.295 17 N -0.692 5.692 18 C 0.535 3.465 19 O -0.587 6.587 20 C -0.106 4.106 21 C -0.104 4.104 22 C 0.084 3.916 23 F -0.150 7.150 24 C -0.153 4.153 25 C -0.068 4.068 26 C -0.116 4.116 27 C -0.012 4.012 28 Cl -0.055 7.055 29 H 0.068 0.932 30 H 0.038 0.962 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.028 0.972 37 H 0.375 0.625 38 H 0.247 0.753 39 H 0.404 0.596 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.158 0.842 43 H 0.188 0.812 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.143 5.306 6.113 14.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.042 3.958 3 H 0.071 0.929 4 C -0.157 4.157 5 C 0.053 3.947 6 H 0.044 0.956 7 C -0.213 4.213 8 N -0.362 5.362 9 C -0.356 4.356 10 H 0.071 0.929 11 C -0.239 4.239 12 N -0.592 5.592 13 Si 0.764 3.236 14 H -0.209 1.209 15 H -0.226 1.226 16 H -0.223 1.223 17 N -0.343 5.343 18 C 0.322 3.678 19 O -0.469 6.469 20 C -0.146 4.146 21 C -0.106 4.106 22 C 0.065 3.935 23 F -0.129 7.129 24 C -0.171 4.171 25 C -0.086 4.086 26 C -0.134 4.134 27 C -0.039 4.039 28 Cl -0.026 7.026 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.127 0.873 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.210 0.790 38 H 0.057 0.943 39 H 0.241 0.759 40 H 0.120 0.880 41 H 0.131 0.869 42 H 0.176 0.824 43 H 0.205 0.795 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -12.280 6.119 6.053 14.996 hybrid contribution 1.766 -0.801 0.124 1.943 sum -10.515 5.318 6.176 13.304 Atomic orbital electron populations 1.22090 0.93836 1.02658 1.02220 1.20926 0.94317 0.96091 0.84439 0.92915 1.22120 0.94779 1.01572 0.97252 1.20492 0.92212 0.94279 0.87687 0.95581 1.22263 1.00034 1.00847 0.98123 1.42500 1.17659 1.40137 1.35900 1.19280 0.94379 1.11905 1.09999 0.92906 1.24892 1.00064 0.99319 0.99593 1.69646 1.38227 1.25170 1.26195 0.85703 0.83088 0.76904 0.77939 1.20901 1.22594 1.22250 1.45975 1.65324 1.14246 1.08782 1.20152 0.76043 0.86513 0.85049 1.90582 1.53057 1.17130 1.86114 1.20571 1.05331 0.97783 0.90928 1.19355 0.93265 0.99957 0.98031 1.17966 0.83745 0.99502 0.92329 1.91539 1.53720 1.94680 1.72952 1.21576 1.02635 0.98575 0.94338 1.21412 0.89976 0.98219 0.98998 1.21494 1.00857 0.94781 0.96308 1.20695 0.87480 0.97887 0.97802 1.98349 1.35733 1.72676 1.95850 0.91313 0.94324 0.89615 0.90458 0.87343 0.93254 0.91236 0.95311 0.79005 0.94332 0.75901 0.88015 0.86857 0.82394 0.79473 0.81025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 9.48 71.98 0.68 -3.18 16 2 C 0.15 4.73 2.57 44.99 0.12 4.85 16 3 H 0.05 2.02 7.58 -2.39 -0.02 2.00 16 4 C -0.12 -3.36 4.43 30.59 0.14 -3.22 16 5 C 0.16 5.97 2.89 44.99 0.13 6.10 16 6 H 0.03 1.07 8.08 -2.39 -0.02 1.05 16 7 C -0.15 -5.03 9.49 71.98 0.68 -4.35 16 8 N -0.72 -32.86 3.84 -322.93 -1.24 -34.10 16 9 C -0.22 -11.99 9.93 84.03 0.83 -11.16 16 10 H 0.05 2.94 7.83 -2.91 -0.02 2.92 16 11 C -0.04 -2.46 5.50 84.86 0.47 -2.00 16 12 N -0.94 -51.92 12.78 21.65 0.28 -51.64 16 13 Si 0.93 47.02 29.55 68.60 2.03 49.05 16 14 H -0.28 -14.16 7.11 99.48 0.71 -13.46 16 15 H -0.30 -15.46 7.11 99.48 0.71 -14.75 16 16 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 17 N -0.69 -25.80 3.80 -442.52 -1.68 -27.48 16 18 C 0.54 22.34 7.79 87.66 0.68 23.02 16 19 O -0.59 -27.23 15.70 -3.05 -0.05 -27.28 16 20 C -0.11 -4.26 5.26 29.10 0.15 -4.10 16 21 C -0.10 -3.83 4.38 -19.80 -0.09 -3.91 16 22 C 0.08 3.16 7.24 22.37 0.16 3.33 16 23 F -0.15 -6.92 16.48 44.97 0.74 -6.18 16 24 C -0.15 -4.15 10.03 22.32 0.22 -3.93 16 25 C -0.07 -1.35 10.04 22.26 0.22 -1.13 16 26 C -0.12 -2.55 9.83 22.30 0.22 -2.33 16 27 C -0.01 -0.35 6.31 22.32 0.14 -0.21 16 28 Cl -0.06 -1.50 27.29 -2.72 -0.07 -1.57 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.11 2.35 8.14 -2.38 -0.02 2.34 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.38 17.45 5.70 -92.71 -0.53 16.92 16 38 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 39 H 0.40 15.19 6.51 -92.71 -0.60 14.58 16 40 H 0.10 4.81 7.37 -2.39 -0.02 4.79 16 41 H 0.11 4.03 6.90 -2.39 -0.02 4.01 16 42 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 43 H 0.19 1.89 8.06 -2.91 -0.02 1.86 16 44 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -68.20 383.54 4.66 -63.54 By element: Atomic # 1 Polarization: 38.02 SS G_CDS: -0.10 Total: 37.91 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 4.77 Total: -2.24 kcal Atomic # 7 Polarization: -110.58 SS G_CDS: -2.65 Total: -113.22 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.05 Total: -27.28 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 0.74 Total: -6.18 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.07 Total: -1.57 kcal Total: -68.20 4.66 -63.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136009853.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.260 kcal (2) G-P(sol) polarization free energy of solvation -68.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds