Wall clock time and date at job start Wed Apr 1 2020 01:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47449 * 2 1 4 4 N 1.46500 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99749 * 270.00167 * 4 3 2 6 6 H 1.07995 * 120.00097 * 38.13506 * 5 4 3 7 7 C 1.38817 * 119.99399 * 218.13228 * 5 4 3 8 8 N 1.31616 * 120.00112 * 21.28059 * 7 5 4 9 9 Si 1.86799 * 119.99554 * 201.28077 * 7 5 4 10 10 H 1.48509 * 109.47026 * 90.00160 * 9 7 5 11 11 H 1.48498 * 109.47243 * 210.00089 * 9 7 5 12 12 H 1.48506 * 109.47387 * 330.00336 * 9 7 5 13 13 C 1.46500 * 119.99766 * 90.00258 * 4 3 2 14 14 C 1.53006 * 109.46947 * 264.49608 * 13 4 3 15 15 N 1.46500 * 109.46947 * 179.97438 * 14 13 4 16 16 C 1.34783 * 119.99656 * 180.02562 * 15 14 13 17 17 O 1.21274 * 119.99956 * 0.02562 * 16 15 14 18 18 C 1.50695 * 119.99507 * 180.02562 * 16 15 14 19 19 C 1.50706 * 109.46914 * 180.02562 * 18 16 15 20 20 C 1.38458 * 120.01791 * 269.72884 * 19 18 16 21 21 F 1.35104 * 120.02027 * 359.97438 * 20 19 18 22 22 C 1.38443 * 119.95995 * 179.72183 * 20 19 18 23 23 C 1.38231 * 120.00141 * 0.52674 * 22 20 19 24 24 C 1.38204 * 120.03827 * 359.77204 * 23 22 20 25 25 C 1.38288 * 120.01883 * 90.00025 * 19 18 16 26 26 Cl 1.73602 * 120.00234 * 0.02562 * 25 19 18 27 27 H 1.09000 * 109.47492 * 59.99633 * 1 2 3 28 28 H 1.08999 * 109.47402 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46859 * 299.99780 * 1 2 3 30 30 H 1.09007 * 109.46859 * 240.00220 * 2 1 3 31 31 H 1.09000 * 109.47492 * 120.00367 * 2 1 3 32 32 H 1.08998 * 109.46731 * 60.00203 * 3 2 1 33 33 H 1.09000 * 109.47073 * 300.00623 * 3 2 1 34 34 H 0.97001 * 119.99688 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.47149 * 144.50283 * 13 4 3 36 36 H 1.08998 * 109.47697 * 24.49724 * 13 4 3 37 37 H 1.09008 * 109.46945 * 60.00439 * 14 13 4 38 38 H 1.08996 * 109.47526 * 300.00440 * 14 13 4 39 39 H 0.97001 * 120.00144 * 0.02562 * 15 14 13 40 40 H 1.08998 * 109.47635 * 299.99736 * 18 16 15 41 41 H 1.09004 * 109.47587 * 60.00372 * 18 16 15 42 42 H 1.08005 * 120.00062 * 180.27391 * 22 20 19 43 43 H 1.08003 * 119.97992 * 179.74563 * 23 22 20 44 44 H 1.07990 * 119.98215 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1902 1.4422 1.1851 6 1 3.8234 0.8645 2.0205 7 6 5.3562 2.1845 1.3129 8 7 5.5892 3.1899 0.4960 9 14 6.5945 1.7565 2.6443 10 1 7.5730 0.7739 2.1129 11 1 7.3095 2.9867 3.0693 12 1 5.8856 1.1685 3.8093 13 6 4.2370 1.4427 -1.2697 14 6 4.6116 0.0068 -1.6426 15 7 5.3429 0.0070 -2.9120 16 6 5.7760 -1.1549 -3.4403 17 8 5.5598 -2.2004 -2.8651 18 6 6.5288 -1.1546 -4.7457 19 6 6.8966 -2.5690 -5.1138 20 6 8.1020 -3.1035 -4.6914 21 9 8.9494 -2.3573 -3.9496 22 6 8.4361 -4.4049 -5.0253 23 6 7.5714 -5.1662 -5.7891 24 6 6.3709 -4.6306 -6.2159 25 6 6.0329 -3.3319 -5.8782 26 17 4.5247 -2.6601 -6.4148 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 6.4042 3.7083 0.5852 35 1 5.1432 2.0393 -1.1663 36 1 3.6085 1.8689 -2.0516 37 1 3.7052 -0.5900 -1.7460 38 1 5.2400 -0.4195 -0.8608 39 1 5.5155 0.8432 -3.3722 40 1 5.9005 -0.7279 -5.5275 41 1 7.4354 -0.5583 -4.6423 42 1 9.3743 -4.8240 -4.6925 43 1 7.8342 -6.1800 -6.0529 44 1 5.6963 -5.2261 -6.8129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266577430.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:41 Heat of formation + Delta-G solvation = -56.712493 kcal Electronic energy + Delta-G solvation = -27392.850345 eV Core-core repulsion = 23285.700040 eV Total energy + Delta-G solvation = -4107.150305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.09238 -39.91011 -38.75058 -36.67737 -36.46909 -34.19589 -33.15800 -32.86103 -30.80664 -30.67074 -28.87134 -27.12226 -25.56003 -23.54718 -23.10256 -22.27879 -20.92853 -20.35287 -19.87701 -17.98497 -17.14525 -17.07013 -16.42202 -16.27280 -15.63665 -15.24000 -15.18188 -14.93109 -14.75519 -14.32859 -13.99266 -13.72880 -13.64666 -13.53603 -13.11514 -12.94371 -12.87224 -12.72584 -12.34499 -11.78472 -11.65428 -11.58781 -11.57824 -11.46283 -11.17306 -11.06221 -10.93227 -10.75162 -10.42832 -10.33734 -10.07147 -9.87334 -9.77950 -9.57944 -9.02376 -8.92828 -8.55313 -8.43783 -6.61701 -5.81752 -3.43432 0.73682 0.80273 1.81634 2.96469 3.10328 3.36337 3.43757 3.45940 3.67473 4.01280 4.25797 4.46899 4.48829 4.56695 4.91150 5.03327 5.15265 5.22211 5.28345 5.39450 5.49165 5.63298 5.66690 5.74954 5.76215 5.82764 5.90787 6.02937 6.14287 6.23612 6.29408 6.42874 6.44959 6.54853 6.62410 6.67568 6.90607 6.97561 7.04913 7.17487 7.56108 7.81024 7.93769 8.48265 8.59983 9.14818 9.76491 10.34480 11.16420 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.011291 B = 0.003187 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.220472 B = 8784.217235 C =10414.569899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.148 3.852 4 N -0.579 5.579 5 C -0.262 4.262 6 H 0.061 0.939 7 C 0.015 3.985 8 N -0.886 5.886 9 Si 0.895 3.105 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.135 3.865 14 C 0.100 3.900 15 N -0.719 5.719 16 C 0.513 3.487 17 O -0.539 6.539 18 C -0.113 4.113 19 C -0.086 4.086 20 C 0.125 3.875 21 F -0.128 7.128 22 C -0.149 4.149 23 C -0.082 4.082 24 C -0.121 4.121 25 C 0.003 3.997 26 Cl -0.053 7.053 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.032 0.968 34 H 0.255 0.745 35 H 0.098 0.902 36 H 0.029 0.971 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.397 0.603 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.126 -11.754 -17.041 20.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.022 3.978 4 N -0.299 5.299 5 C -0.391 4.391 6 H 0.079 0.921 7 C -0.185 4.185 8 N -0.528 5.528 9 Si 0.725 3.275 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.201 1.201 13 C 0.008 3.992 14 C -0.025 4.025 15 N -0.369 5.369 16 C 0.298 3.702 17 O -0.416 6.416 18 C -0.153 4.153 19 C -0.088 4.088 20 C 0.106 3.894 21 F -0.107 7.107 22 C -0.168 4.168 23 C -0.100 4.100 24 C -0.140 4.140 25 C -0.024 4.024 26 Cl -0.024 7.024 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.115 0.885 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.230 0.770 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.159 0.841 43 H 0.160 0.840 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.966 -12.234 -16.587 20.704 hybrid contribution 0.847 0.311 0.567 1.066 sum 2.814 -11.923 -16.020 20.167 Atomic orbital electron populations 1.21720 0.97325 1.00386 1.01006 1.22204 0.93840 1.01003 1.01506 1.20946 0.85043 0.92853 0.98983 1.43599 0.99415 1.85085 1.01820 1.19031 1.06116 1.22644 0.91347 0.92096 1.25179 1.00790 0.94597 0.97955 1.69971 1.25924 1.17096 1.39851 0.86408 0.81716 0.77546 0.81852 1.21201 1.21676 1.20130 1.21076 0.99546 0.91780 0.86799 1.22408 0.94886 1.02333 0.82843 1.46080 1.57343 1.08275 1.25242 1.20137 0.79651 0.84419 0.85995 1.90699 1.57140 1.31436 1.62324 1.20715 1.02882 0.93811 0.97858 1.19146 0.93361 0.96822 0.99453 1.17293 0.88279 0.89992 0.93884 1.91538 1.69089 1.76033 1.73998 1.21220 1.02045 0.92562 1.00999 1.20927 0.92821 0.99948 0.96302 1.21065 0.97924 0.93364 1.01663 1.20503 0.88395 0.94125 0.99368 1.98385 1.30318 1.85283 1.88428 0.93458 0.93831 0.93197 0.93010 0.92407 0.93270 0.94991 0.93529 0.88490 0.95225 0.93028 0.91743 0.76959 0.87131 0.87318 0.84055 0.84050 0.84238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 37.16 0.37 -1.82 16 2 C -0.15 -2.69 6.26 -26.73 -0.17 -2.86 16 3 C 0.15 3.09 5.71 -4.04 -0.02 3.07 16 4 N -0.58 -14.05 2.43 -173.24 -0.42 -14.48 16 5 C -0.26 -7.05 9.42 -15.06 -0.14 -7.19 16 6 H 0.06 1.66 7.92 -52.49 -0.42 1.25 16 7 C 0.02 0.42 5.00 -17.43 -0.09 0.33 16 8 N -0.89 -24.72 11.43 55.49 0.63 -24.09 16 9 Si 0.90 21.62 29.60 -169.99 -5.03 16.59 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.14 3.01 5.50 -4.04 -0.02 2.99 16 14 C 0.10 2.08 5.97 -4.04 -0.02 2.06 16 15 N -0.72 -12.26 5.56 -60.29 -0.33 -12.59 16 16 C 0.51 8.80 7.82 -10.98 -0.09 8.71 16 17 O -0.54 -11.36 16.03 5.56 0.09 -11.27 16 18 C -0.11 -1.44 5.26 -29.03 -0.15 -1.60 16 19 C -0.09 -1.12 4.38 -104.52 -0.46 -1.58 16 20 C 0.13 1.60 7.24 -39.42 -0.29 1.32 16 21 F -0.13 -1.81 16.48 2.25 0.04 -1.77 16 22 C -0.15 -1.48 10.03 -39.51 -0.40 -1.88 16 23 C -0.08 -0.68 10.04 -39.60 -0.40 -1.08 16 24 C -0.12 -1.14 9.83 -39.54 -0.39 -1.53 16 25 C 0.00 0.04 6.31 -39.51 -0.25 -0.21 16 26 Cl -0.05 -0.61 27.29 -51.86 -1.42 -2.02 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.05 0.98 6.65 -51.92 -0.35 0.64 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.05 1.05 8.04 -51.93 -0.42 0.64 16 33 H 0.03 0.63 7.86 -51.93 -0.41 0.22 16 34 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.10 2.42 5.53 -51.93 -0.29 2.13 16 36 H 0.03 0.61 7.83 -51.93 -0.41 0.20 16 37 H 0.05 1.10 6.65 -51.92 -0.35 0.75 16 38 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.40 5.62 8.47 -40.82 -0.35 5.27 16 40 H 0.11 1.18 6.90 -51.93 -0.36 0.82 16 41 H 0.11 1.22 7.63 -51.93 -0.40 0.83 16 42 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 43 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 44 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 385.52 15.07 5.81 5.81 Total: -1.00 -31.75 385.52 -9.39 -41.14 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -6.24 Total: 3.96 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -2.51 Total: -1.26 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.12 Total: -51.16 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.42 Total: -2.02 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.75 -9.39 -41.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266577430.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.574 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds