Wall clock time and date at job start Wed Apr 1 2020 00:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46530 * 2 1 4 4 C 1.52997 * 109.46908 * 119.99854 * 2 1 3 5 5 H 1.08999 * 109.46983 * 60.00346 * 4 2 1 6 6 C 1.52993 * 109.47602 * 300.00088 * 4 2 1 7 7 N 1.46498 * 109.47559 * 185.00002 * 6 4 2 8 8 C 1.34770 * 119.99990 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00347 * 0.02562 * 8 7 6 10 10 C 1.50707 * 119.99790 * 180.02562 * 8 7 6 11 11 C 1.50700 * 109.47190 * 180.02562 * 10 8 7 12 12 C 1.38465 * 120.02089 * 89.99632 * 11 10 8 13 13 F 1.35099 * 120.01435 * 0.02562 * 12 11 10 14 14 C 1.38446 * 119.96330 * 179.97438 * 12 11 10 15 15 C 1.38224 * 120.00166 * 0.02562 * 14 12 11 16 16 C 1.38204 * 120.03769 * 359.97438 * 15 14 12 17 17 C 1.38294 * 120.01874 * 269.72851 * 11 10 8 18 18 Cl 1.73598 * 120.00257 * 359.97438 * 17 11 10 19 19 N 1.46506 * 109.46691 * 180.02562 * 4 2 1 20 20 C 1.36939 * 120.00073 * 274.72524 * 19 4 2 21 21 H 1.08004 * 119.99859 * 0.02562 * 20 19 4 22 22 C 1.38805 * 119.99849 * 180.02562 * 20 19 4 23 23 N 1.31625 * 120.00056 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00155 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46896 * 90.00225 * 24 22 20 26 26 H 1.48501 * 109.47275 * 210.00265 * 24 22 20 27 27 H 1.48499 * 109.47039 * 330.00065 * 24 22 20 28 28 H 1.08998 * 109.47401 * 299.99857 * 1 2 3 29 29 H 1.09005 * 109.46989 * 60.00258 * 1 2 3 30 30 H 1.08999 * 109.47016 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46903 * 240.00143 * 2 1 3 32 32 H 1.09002 * 109.46655 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47149 * 299.99709 * 3 2 1 34 34 H 1.08995 * 109.47411 * 60.00453 * 3 2 1 35 35 H 1.09002 * 109.47378 * 305.00625 * 6 4 2 36 36 H 1.09004 * 109.46895 * 64.99844 * 6 4 2 37 37 H 0.96997 * 120.00009 * 0.02562 * 7 6 4 38 38 H 1.08997 * 109.47232 * 299.99988 * 10 8 7 39 39 H 1.08995 * 109.46819 * 60.00788 * 10 8 7 40 40 H 1.07997 * 119.99666 * 179.97438 * 14 12 11 41 41 H 1.07999 * 119.98381 * 180.02562 * 15 14 12 42 42 H 1.07999 * 119.98110 * 179.97438 * 16 15 14 43 43 H 0.97005 * 119.99811 * 95.00317 * 19 4 2 44 44 H 0.97000 * 119.99835 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -1.7489 1.2492 6 6 1.5300 -0.0001 2.4985 7 7 2.1141 -0.6176 3.6916 8 6 1.8060 -0.1438 4.9151 9 8 1.0448 0.7935 5.0284 10 6 2.4073 -0.7788 6.1424 11 6 1.9049 -0.0685 7.3729 12 6 0.7483 -0.5015 7.9991 13 9 0.0699 -1.5614 7.5074 14 6 0.2881 0.1516 9.1297 15 6 0.9828 1.2356 9.6326 16 6 2.1372 1.6678 9.0077 17 6 2.6018 1.0127 7.8807 18 17 4.0561 1.5518 7.1010 19 7 3.5051 -0.7206 1.2495 20 6 4.1903 -1.6950 0.5740 21 1 3.6506 -2.4637 0.0406 22 6 5.5783 -1.6947 0.5747 23 7 6.2370 -2.6315 -0.0742 24 14 6.5116 -0.3649 1.4966 25 1 6.7585 -0.8100 2.8916 26 1 7.8095 -0.1118 0.8207 27 1 5.7088 0.8843 1.5102 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.8183 1.0503 2.4549 36 1 0.4437 -0.0770 2.5443 37 1 2.7232 -1.3671 3.6010 38 1 2.1190 -1.8291 6.1865 39 1 3.4936 -0.7017 6.0962 40 1 -0.6142 -0.1854 9.6183 41 1 0.6237 1.7446 10.5149 42 1 2.6791 2.5151 9.4012 43 1 3.9897 -0.0324 1.7316 44 1 7.2070 -2.6311 -0.0740 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268220389.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:03 Heat of formation + Delta-G solvation = -80.516152 kcal Electronic energy + Delta-G solvation = -27847.583313 eV Core-core repulsion = 23739.400804 eV Total energy + Delta-G solvation = -4108.182509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.03806 -41.12977 -39.98787 -38.86910 -37.53606 -35.24173 -35.07758 -34.08049 -32.74975 -31.45045 -29.92512 -28.19370 -27.94607 -25.49013 -24.00103 -23.90083 -23.12123 -21.43913 -20.16906 -19.83384 -18.81295 -18.07791 -17.95680 -17.57743 -16.90011 -16.71038 -16.63775 -16.19663 -15.81010 -15.63131 -15.37044 -15.01735 -14.82749 -14.67537 -14.52079 -14.37092 -14.24662 -14.03328 -13.97150 -13.39674 -12.99985 -12.87252 -12.76385 -12.70027 -12.56292 -12.47687 -12.40681 -12.26208 -12.07191 -11.93596 -11.83909 -11.64874 -11.26356 -11.08902 -10.90448 -10.04661 -9.89311 -9.74818 -9.30316 -8.00274 -5.32788 -0.05967 -0.00476 0.97865 1.36424 1.38201 1.44553 1.57600 2.14095 2.47443 2.50550 3.18178 3.31234 3.35305 3.54372 3.66297 3.80840 3.87335 3.93052 4.18485 4.20017 4.26097 4.32361 4.34791 4.41449 4.46274 4.51187 4.68505 4.83797 4.85788 4.89020 5.01341 5.07105 5.07689 5.11880 5.17558 5.19184 5.28337 5.43026 5.54267 5.62324 5.69742 5.82101 6.23115 6.51278 7.08872 7.17277 7.83789 8.02837 9.21192 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.003568 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.104577 B = 7844.790536 C = 9022.943108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 C -0.138 4.138 4 C 0.175 3.825 5 H 0.058 0.942 6 C 0.118 3.882 7 N -0.717 5.717 8 C 0.518 3.482 9 O -0.571 6.571 10 C -0.111 4.111 11 C -0.108 4.108 12 C 0.100 3.900 13 F -0.141 7.141 14 C -0.146 4.146 15 C -0.068 4.068 16 C -0.120 4.120 17 C -0.016 4.016 18 Cl -0.065 7.065 19 N -0.742 5.742 20 C -0.216 4.216 21 H 0.063 0.937 22 C -0.054 4.054 23 N -0.981 5.981 24 Si 0.938 3.062 25 H -0.275 1.275 26 H -0.302 1.302 27 H -0.261 1.261 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.035 0.965 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.411 0.589 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.167 0.833 41 H 0.183 0.817 42 H 0.162 0.838 43 H 0.363 0.637 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.747 8.656 20.827 25.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.195 4.195 4 C 0.067 3.933 5 H 0.076 0.924 6 C -0.006 4.006 7 N -0.368 5.368 8 C 0.304 3.696 9 O -0.450 6.450 10 C -0.150 4.150 11 C -0.110 4.110 12 C 0.081 3.919 13 F -0.119 7.119 14 C -0.165 4.165 15 C -0.086 4.086 16 C -0.139 4.139 17 C -0.043 4.043 18 Cl -0.036 7.036 19 N -0.385 5.385 20 C -0.347 4.347 21 H 0.081 0.919 22 C -0.245 4.245 23 N -0.632 5.632 24 Si 0.767 3.233 25 H -0.201 1.201 26 H -0.230 1.230 27 H -0.186 1.186 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.247 0.753 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.184 0.816 41 H 0.200 0.800 42 H 0.180 0.820 43 H 0.196 0.804 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.147 9.130 20.669 26.142 hybrid contribution 1.580 -0.148 -0.494 1.662 sum -11.567 8.982 20.175 24.930 Atomic orbital electron populations 1.21839 0.93675 1.02006 1.02318 1.21579 0.96172 0.96609 0.98573 1.21744 1.00311 0.95881 1.01575 1.20629 0.82703 0.97716 0.92233 0.92413 1.21730 0.98308 0.97100 0.83440 1.46027 1.48792 1.36635 1.05391 1.20595 0.80959 0.83149 0.84848 1.90659 1.37576 1.29631 1.87179 1.20683 1.03440 1.01752 0.89156 1.19202 0.96104 0.98014 0.97723 1.17598 0.91298 0.87402 0.95619 1.91487 1.78779 1.54057 1.87611 1.21599 1.02645 0.97198 0.95014 1.21423 0.92617 0.94484 1.00084 1.21471 0.97847 1.00776 0.93763 1.20769 0.90724 0.96261 0.96519 1.98394 1.35352 1.89036 1.80844 1.42756 1.01944 1.31872 1.61969 1.18963 0.89279 1.03423 1.23045 0.91915 1.25272 0.97227 1.00192 1.01835 1.69855 1.06995 1.37246 1.49109 0.85668 0.78187 0.80608 0.78834 1.20132 1.22957 1.18648 0.91939 0.91884 0.92478 0.92998 0.94608 0.92148 0.92327 0.91925 0.89956 0.75294 0.85876 0.86444 0.81553 0.79951 0.82033 0.80378 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.84 71.98 0.64 -2.85 16 2 C -0.11 -3.44 2.92 -10.79 -0.03 -3.47 16 3 C -0.14 -4.25 8.69 71.98 0.63 -3.63 16 4 C 0.18 6.08 2.27 44.99 0.10 6.18 16 5 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 6 C 0.12 3.66 4.51 86.38 0.39 4.05 16 7 N -0.72 -22.01 5.39 -463.07 -2.49 -24.50 16 8 C 0.52 16.01 7.82 87.66 0.69 16.69 16 9 O -0.57 -20.77 16.03 -3.04 -0.05 -20.81 16 10 C -0.11 -2.81 5.26 29.10 0.15 -2.65 16 11 C -0.11 -2.64 4.38 -19.80 -0.09 -2.73 16 12 C 0.10 2.25 7.24 22.37 0.16 2.41 16 13 F -0.14 -3.46 16.48 44.97 0.74 -2.72 16 14 C -0.15 -2.24 10.03 22.32 0.22 -2.02 16 15 C -0.07 -0.80 10.04 22.26 0.22 -0.58 16 16 C -0.12 -1.89 9.83 22.30 0.22 -1.67 16 17 C -0.02 -0.35 6.31 22.32 0.14 -0.21 16 18 Cl -0.07 -1.57 27.29 -2.72 -0.07 -1.65 16 19 N -0.74 -31.65 3.60 -322.95 -1.16 -32.82 16 20 C -0.22 -11.44 10.41 84.03 0.87 -10.56 16 21 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 22 C -0.05 -3.02 5.50 84.86 0.47 -2.55 16 23 N -0.98 -60.98 13.97 21.65 0.30 -60.67 16 24 Si 0.94 44.49 27.73 68.60 1.90 46.39 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 27 H -0.26 -11.55 6.52 99.48 0.65 -10.90 16 28 H 0.06 1.44 6.54 -2.39 -0.02 1.42 16 29 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.03 1.28 7.60 -2.39 -0.02 1.26 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 1.66 6.32 -2.39 -0.02 1.65 16 35 H 0.06 2.04 6.17 -2.39 -0.01 2.02 16 36 H 0.08 2.38 6.71 -2.38 -0.02 2.36 16 37 H 0.41 12.53 8.14 -92.71 -0.75 11.78 16 38 H 0.12 2.71 7.64 -2.39 -0.02 2.69 16 39 H 0.12 2.83 6.89 -2.39 -0.02 2.81 16 40 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 41 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 42 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.36 15.53 5.66 -92.70 -0.52 15.00 16 44 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -69.53 378.16 3.66 -65.87 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: -0.29 Total: 34.50 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 4.79 Total: -3.58 kcal Atomic # 7 Polarization: -114.64 SS G_CDS: -3.35 Total: -117.99 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.05 Total: -20.81 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.74 Total: -2.72 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.90 Total: 46.39 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.07 Total: -1.65 kcal Total: -69.53 3.66 -65.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268220389.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.649 kcal (2) G-P(sol) polarization free energy of solvation -69.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds