Wall clock time and date at job start Wed Apr 1 2020 02:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 110.30406 * 2 1 4 4 C 1.54393 * 110.43213 * 122.23306 * 2 1 3 5 5 N 1.48139 * 104.62068 * 142.78637 * 4 2 1 6 6 C 1.34777 * 127.84024 * 140.40670 * 5 4 2 7 7 O 1.21598 * 119.99870 * 180.02562 * 6 5 4 8 8 C 1.47416 * 119.99708 * 0.02570 * 6 5 4 9 9 C 1.39975 * 120.16543 * 89.72725 * 8 6 5 10 10 F 1.35102 * 120.08199 * 359.97438 * 9 8 6 11 11 C 1.38099 * 119.83325 * 179.71755 * 9 8 6 12 12 C 1.38598 * 120.16448 * 0.55173 * 11 9 8 13 13 F 1.35098 * 119.83558 * 179.74144 * 12 11 9 14 14 C 1.38602 * 120.33120 * 359.72651 * 12 11 9 15 15 C 1.38098 * 120.16459 * 359.97438 * 14 12 11 16 16 F 1.35095 * 120.08694 * 179.97438 * 15 14 12 17 17 C 1.48315 * 104.38933 * 320.47276 * 5 4 2 18 18 C 1.54283 * 110.34801 * 237.82143 * 2 1 3 19 19 H 1.08997 * 110.34370 * 122.04589 * 18 2 1 20 20 C 1.53004 * 110.34155 * 359.89584 * 18 2 1 21 21 N 1.46499 * 109.47198 * 176.47418 * 20 18 2 22 22 C 1.36939 * 119.99933 * 180.27608 * 21 20 18 23 23 H 1.08001 * 119.99700 * 359.72658 * 22 21 20 24 24 C 1.38810 * 120.00095 * 179.71972 * 22 21 20 25 25 N 1.31624 * 119.99740 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00044 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47144 * 90.00258 * 26 24 22 28 28 H 1.48500 * 109.47140 * 210.00775 * 26 24 22 29 29 H 1.48502 * 109.46967 * 330.00206 * 26 24 22 30 30 H 1.09002 * 109.47425 * 182.17307 * 1 2 3 31 31 H 1.08996 * 109.47494 * 302.18334 * 1 2 3 32 32 H 1.09003 * 109.46897 * 62.17996 * 1 2 3 33 33 H 1.09004 * 110.40591 * 261.57052 * 4 2 1 34 34 H 1.09000 * 110.40490 * 23.87596 * 4 2 1 35 35 H 1.08001 * 119.92052 * 180.27182 * 11 9 8 36 36 H 1.08000 * 119.91736 * 179.97438 * 14 12 11 37 37 H 1.08998 * 110.38541 * 280.73226 * 17 5 4 38 38 H 1.09004 * 110.50344 * 158.25046 * 17 5 4 39 39 H 1.09009 * 109.46730 * 56.47206 * 20 18 2 40 40 H 1.08998 * 109.46846 * 296.47750 * 20 18 2 41 41 H 0.97001 * 119.99790 * 359.97438 * 21 20 18 42 42 H 0.96998 * 119.99409 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9081 1.0223 0.0000 4 6 2.0689 -0.7717 1.2238 5 7 3.2692 -1.4793 0.7207 6 6 4.4461 -1.6624 1.3515 7 8 5.3432 -2.2704 0.8002 8 6 4.6456 -1.1254 2.7098 9 6 4.3224 -1.9028 3.8280 10 9 3.8256 -3.1487 3.6659 11 6 4.5176 -1.3952 5.0974 12 6 5.0214 -0.1150 5.2656 13 9 5.2048 0.3769 6.5104 14 6 5.3383 0.6629 4.1631 15 6 5.1544 0.1666 2.8876 16 9 5.4633 0.9264 1.8142 17 6 2.8841 -1.9400 -0.6354 18 6 2.0664 -0.7704 -1.2243 19 1 2.7066 -0.1260 -1.8268 20 6 0.9062 -1.3038 -2.0673 21 7 1.4346 -1.9582 -3.2668 22 6 0.5763 -2.5103 -4.1799 23 1 -0.4900 -2.4672 -4.0134 24 6 1.0766 -3.1252 -5.3193 25 7 2.3761 -3.1780 -5.5219 26 14 -0.0942 -3.8790 -6.5645 27 1 -0.4625 -2.8586 -7.5784 28 1 0.5680 -5.0266 -7.2349 29 1 -1.3188 -4.3510 -5.8697 30 1 -0.3634 -1.0269 0.0390 31 1 -0.3634 0.5473 0.8697 32 1 -0.3633 0.4796 -0.9089 33 1 2.3419 -0.0789 2.0199 34 1 1.3262 -1.4853 1.5804 35 1 4.2728 -1.9955 5.9612 36 1 5.7301 1.6597 4.3020 37 1 2.2703 -2.8385 -0.5711 38 1 3.7707 -2.1269 -1.2413 39 1 0.2592 -0.4767 -2.3596 40 1 0.3336 -2.0240 -1.4828 41 1 2.3922 -1.9965 -3.4164 42 1 2.7257 -3.6080 -6.3179 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271659267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:39 Heat of formation + Delta-G solvation = -120.216563 kcal Electronic energy + Delta-G solvation = -29945.423611 eV Core-core repulsion = 25283.722883 eV Total energy + Delta-G solvation = -4661.700728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.71602 -49.62033 -49.59762 -40.38913 -38.97753 -37.85809 -34.69533 -33.04560 -31.53535 -31.26961 -31.16091 -28.99049 -26.74053 -25.43217 -24.32188 -23.80785 -23.09814 -22.08084 -20.17224 -19.16076 -18.92877 -18.48405 -17.89310 -16.96985 -16.80602 -16.55539 -16.53478 -16.28215 -15.92278 -15.86805 -15.67111 -15.38415 -14.99368 -14.86645 -14.59306 -14.06892 -13.73995 -13.47284 -13.21342 -13.00091 -12.85144 -12.51958 -12.45699 -12.28776 -12.18502 -11.97510 -11.96078 -11.77528 -10.98526 -10.86194 -10.54620 -10.48452 -10.22331 -10.21442 -9.93798 -9.68142 -9.58794 -9.47550 -8.86897 -8.79316 -6.91743 -5.75267 -3.04694 -0.01013 0.17991 2.25481 2.39136 2.72275 2.89430 3.44323 3.49122 3.50635 3.51318 3.55741 3.93330 4.10446 4.12411 4.52239 4.58618 4.73774 4.84184 4.98333 4.98895 5.05154 5.07182 5.24697 5.26936 5.34904 5.42849 5.55777 5.59395 5.74000 5.77202 5.88049 5.95545 6.05418 6.08181 6.11694 6.28963 6.37791 6.46609 6.72161 6.82827 7.39426 7.70126 7.89439 8.43045 9.54139 10.11460 10.45413 11.47389 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.021211 B = 0.002527 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.726700 B =11077.942424 C =11299.775909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.079 0.921 4 C 0.103 3.897 5 N -0.610 5.610 6 C 0.582 3.418 7 O -0.515 6.515 8 C -0.200 4.200 9 C 0.196 3.804 10 F -0.109 7.109 11 C -0.202 4.202 12 C 0.177 3.823 13 F -0.117 7.117 14 C -0.202 4.202 15 C 0.196 3.804 16 F -0.108 7.108 17 C 0.116 3.884 18 C -0.105 4.105 19 H 0.083 0.917 20 C 0.163 3.837 21 N -0.734 5.734 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.931 5.931 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.028 0.972 40 H 0.024 0.976 41 H 0.384 0.616 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.543 9.767 26.014 27.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.098 0.902 4 C -0.020 4.020 5 N -0.343 5.343 6 C 0.368 3.632 7 O -0.390 6.390 8 C -0.205 4.205 9 C 0.176 3.824 10 F -0.087 7.087 11 C -0.222 4.222 12 C 0.157 3.843 13 F -0.095 7.095 14 C -0.222 4.222 15 C 0.176 3.824 16 F -0.086 7.086 17 C -0.005 4.005 18 C -0.125 4.125 19 H 0.101 0.899 20 C 0.035 3.965 21 N -0.379 5.379 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.181 0.819 36 H 0.181 0.819 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.045 0.955 40 H 0.041 0.959 41 H 0.217 0.783 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.979 9.336 25.668 27.475 hybrid contribution -0.246 -0.401 -0.744 0.880 sum 2.733 8.934 24.925 26.618 Atomic orbital electron populations 1.21898 0.93671 1.02753 1.02010 1.22045 0.96702 0.99188 0.93746 0.90216 1.22587 0.86729 0.95606 0.97092 1.49022 1.12005 1.54759 1.18479 1.17094 0.81714 0.80403 0.83999 1.90885 1.41091 1.40902 1.66155 1.20022 1.09756 0.95508 0.95207 1.16773 0.94017 0.80268 0.91370 1.91637 1.83871 1.36984 1.96179 1.21002 1.07109 0.96548 0.97540 1.16891 0.96575 0.91193 0.79645 1.91595 1.92344 1.87451 1.38159 1.21008 1.08091 1.03484 0.89630 1.16776 0.95291 0.86846 0.83514 1.91640 1.89608 1.74072 1.53276 1.22585 0.99926 0.97349 0.80602 1.22352 0.98215 0.96217 0.95705 0.89893 1.20846 0.92786 0.94921 0.87934 1.42423 1.06635 1.67709 1.21110 1.19191 0.89778 1.28956 0.99283 0.91189 1.24754 0.95821 1.01671 0.98686 1.69664 1.10464 1.49248 1.28601 0.86199 0.79826 0.78619 0.81581 1.21749 1.21784 1.20783 0.91640 0.93074 0.91207 0.91023 0.90289 0.81887 0.81879 0.89887 0.89348 0.95483 0.95851 0.78284 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 7.94 37.15 0.30 -1.23 16 2 C -0.10 -1.13 3.65 -89.22 -0.33 -1.45 16 3 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 4 C 0.10 1.13 6.46 -2.41 -0.02 1.11 16 5 N -0.61 -8.83 3.32 -170.44 -0.57 -9.39 16 6 C 0.58 9.09 6.63 -12.52 -0.08 9.00 16 7 O -0.51 -10.17 17.37 5.28 0.09 -10.07 16 8 C -0.20 -2.33 4.54 -104.85 -0.48 -2.81 16 9 C 0.20 1.93 7.29 -38.98 -0.28 1.64 16 10 F -0.11 -1.23 16.83 2.25 0.04 -1.20 16 11 C -0.20 -1.40 9.99 -39.50 -0.39 -1.79 16 12 C 0.18 1.18 7.30 -39.31 -0.29 0.89 16 13 F -0.12 -0.77 17.26 2.25 0.04 -0.74 16 14 C -0.20 -1.40 9.99 -39.50 -0.39 -1.80 16 15 C 0.20 1.93 7.29 -38.98 -0.28 1.65 16 16 F -0.11 -1.24 16.83 2.25 0.04 -1.20 16 17 C 0.12 1.93 6.34 -2.32 -0.01 1.91 16 18 C -0.11 -1.63 3.11 -89.22 -0.28 -1.91 16 19 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 20 C 0.16 3.05 4.39 -4.04 -0.02 3.04 16 21 N -0.73 -18.18 5.46 -59.90 -0.33 -18.51 16 22 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 23 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 26 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 29 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 30 H 0.06 0.72 6.86 -51.93 -0.36 0.37 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.79 6.71 -51.93 -0.35 0.44 16 33 H 0.07 0.64 7.44 -51.93 -0.39 0.26 16 34 H 0.08 0.80 7.84 -51.93 -0.41 0.39 16 35 H 0.16 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.16 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.08 1.43 7.78 -51.93 -0.40 1.03 16 38 H 0.09 1.67 7.89 -51.93 -0.41 1.26 16 39 H 0.03 0.51 6.58 -51.92 -0.34 0.17 16 40 H 0.02 0.44 6.89 -51.93 -0.36 0.08 16 41 H 0.38 10.14 7.56 -40.82 -0.31 9.83 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 363.61 15.07 5.48 5.48 Total: -1.00 -33.07 363.61 -7.29 -40.35 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -4.98 Total: 4.55 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -2.81 Total: 0.97 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.17 Total: -55.55 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.11 Total: -3.13 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.07 -7.29 -40.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271659267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.862 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds