Wall clock time and date at job start Wed Apr 1 2020 02:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 110.30406 * 2 1 4 4 C 1.54393 * 110.43213 * 122.23306 * 2 1 3 5 5 N 1.48139 * 104.62068 * 142.78637 * 4 2 1 6 6 C 1.34777 * 127.84024 * 140.40670 * 5 4 2 7 7 O 1.21598 * 119.99870 * 180.02562 * 6 5 4 8 8 C 1.47416 * 119.99708 * 0.02570 * 6 5 4 9 9 C 1.39975 * 120.16543 * 89.72725 * 8 6 5 10 10 F 1.35102 * 120.08199 * 359.97438 * 9 8 6 11 11 C 1.38099 * 119.83325 * 179.71755 * 9 8 6 12 12 C 1.38598 * 120.16448 * 0.55173 * 11 9 8 13 13 F 1.35098 * 119.83558 * 179.74144 * 12 11 9 14 14 C 1.38602 * 120.33120 * 359.72651 * 12 11 9 15 15 C 1.38098 * 120.16459 * 359.97438 * 14 12 11 16 16 F 1.35095 * 120.08694 * 179.97438 * 15 14 12 17 17 C 1.48315 * 104.38933 * 320.47276 * 5 4 2 18 18 C 1.54283 * 110.34801 * 237.82143 * 2 1 3 19 19 H 1.08997 * 110.34370 * 122.04589 * 18 2 1 20 20 C 1.53004 * 110.34155 * 359.89584 * 18 2 1 21 21 N 1.46499 * 109.47198 * 176.47418 * 20 18 2 22 22 C 1.36939 * 119.99933 * 180.27608 * 21 20 18 23 23 H 1.08001 * 119.99700 * 359.72658 * 22 21 20 24 24 C 1.38810 * 120.00095 * 179.71972 * 22 21 20 25 25 N 1.31624 * 119.99740 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00044 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47144 * 90.00258 * 26 24 22 28 28 H 1.48500 * 109.47140 * 210.00775 * 26 24 22 29 29 H 1.48502 * 109.46967 * 330.00206 * 26 24 22 30 30 H 1.09002 * 109.47425 * 182.17307 * 1 2 3 31 31 H 1.08996 * 109.47494 * 302.18334 * 1 2 3 32 32 H 1.09003 * 109.46897 * 62.17996 * 1 2 3 33 33 H 1.09004 * 110.40591 * 261.57052 * 4 2 1 34 34 H 1.09000 * 110.40490 * 23.87596 * 4 2 1 35 35 H 1.08001 * 119.92052 * 180.27182 * 11 9 8 36 36 H 1.08000 * 119.91736 * 179.97438 * 14 12 11 37 37 H 1.08998 * 110.38541 * 280.73226 * 17 5 4 38 38 H 1.09004 * 110.50344 * 158.25046 * 17 5 4 39 39 H 1.09009 * 109.46730 * 56.47206 * 20 18 2 40 40 H 1.08998 * 109.46846 * 296.47750 * 20 18 2 41 41 H 0.97001 * 119.99790 * 359.97438 * 21 20 18 42 42 H 0.96998 * 119.99409 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9081 1.0223 0.0000 4 6 2.0689 -0.7717 1.2238 5 7 3.2692 -1.4793 0.7207 6 6 4.4461 -1.6624 1.3515 7 8 5.3432 -2.2704 0.8002 8 6 4.6456 -1.1254 2.7098 9 6 4.3224 -1.9028 3.8280 10 9 3.8256 -3.1487 3.6659 11 6 4.5176 -1.3952 5.0974 12 6 5.0214 -0.1150 5.2656 13 9 5.2048 0.3769 6.5104 14 6 5.3383 0.6629 4.1631 15 6 5.1544 0.1666 2.8876 16 9 5.4633 0.9264 1.8142 17 6 2.8841 -1.9400 -0.6354 18 6 2.0664 -0.7704 -1.2243 19 1 2.7066 -0.1260 -1.8268 20 6 0.9062 -1.3038 -2.0673 21 7 1.4346 -1.9582 -3.2668 22 6 0.5763 -2.5103 -4.1799 23 1 -0.4900 -2.4672 -4.0134 24 6 1.0766 -3.1252 -5.3193 25 7 2.3761 -3.1780 -5.5219 26 14 -0.0942 -3.8790 -6.5645 27 1 -0.4625 -2.8586 -7.5784 28 1 0.5680 -5.0266 -7.2349 29 1 -1.3188 -4.3510 -5.8697 30 1 -0.3634 -1.0269 0.0390 31 1 -0.3634 0.5473 0.8697 32 1 -0.3633 0.4796 -0.9089 33 1 2.3419 -0.0789 2.0199 34 1 1.3262 -1.4853 1.5804 35 1 4.2728 -1.9955 5.9612 36 1 5.7301 1.6597 4.3020 37 1 2.2703 -2.8385 -0.5711 38 1 3.7707 -2.1269 -1.2413 39 1 0.2592 -0.4767 -2.3596 40 1 0.3336 -2.0240 -1.4828 41 1 2.3922 -1.9965 -3.4164 42 1 2.7257 -3.6080 -6.3179 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271659267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:38 Heat of formation + Delta-G solvation = -140.877029 kcal Electronic energy + Delta-G solvation = -29946.319516 eV Core-core repulsion = 25283.722883 eV Total energy + Delta-G solvation = -4662.596633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.40957 -50.38998 -50.25223 -41.52219 -39.88039 -38.98247 -36.45035 -34.47827 -32.88506 -32.35845 -31.90813 -30.46780 -27.86486 -26.83823 -25.53049 -24.47498 -24.44487 -23.50718 -21.19691 -20.25402 -19.86579 -19.20218 -19.19346 -18.61468 -17.72039 -17.37748 -17.27502 -17.13183 -17.01225 -16.67359 -16.52229 -16.41433 -16.19372 -16.11088 -15.51015 -15.32803 -15.24913 -15.12957 -14.46747 -14.05382 -13.85395 -13.58412 -13.55306 -13.30611 -13.16286 -13.07765 -12.93556 -12.86612 -12.82979 -12.77751 -12.16468 -11.84417 -11.74669 -11.57940 -11.43217 -11.30897 -10.88489 -10.22801 -10.19995 -10.03050 -8.98216 -7.94152 -5.23327 -0.71202 -0.45168 1.09232 1.47063 1.49177 1.55532 1.57532 1.83364 2.18623 2.56367 2.82489 2.90016 3.00760 3.39084 3.43147 3.48288 3.53586 3.62249 3.79392 4.07068 4.19988 4.32142 4.33114 4.35245 4.36876 4.39547 4.40715 4.52054 4.58446 4.70772 4.74421 4.79176 4.80019 4.94401 5.08667 5.17359 5.22970 5.33578 5.40825 5.51306 5.54292 6.24692 6.27651 6.69757 7.33402 8.10196 8.31407 9.29723 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.021211 B = 0.002527 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.726700 B =11077.942424 C =11299.775909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.096 0.904 4 C 0.103 3.897 5 N -0.609 5.609 6 C 0.576 3.424 7 O -0.573 6.573 8 C -0.218 4.218 9 C 0.185 3.815 10 F -0.123 7.123 11 C -0.179 4.179 12 C 0.191 3.809 13 F -0.110 7.110 14 C -0.179 4.179 15 C 0.185 3.815 16 F -0.123 7.123 17 C 0.119 3.881 18 C -0.097 4.097 19 H 0.067 0.933 20 C 0.165 3.835 21 N -0.750 5.750 22 C -0.240 4.240 23 H 0.081 0.919 24 C -0.080 4.080 25 N -0.973 5.973 26 Si 0.974 3.026 27 H -0.286 1.286 28 H -0.299 1.299 29 H -0.266 1.266 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.192 0.808 36 H 0.192 0.808 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.038 0.962 40 H 0.032 0.968 41 H 0.370 0.630 42 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.804 11.523 29.320 31.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 H 0.114 0.886 4 C -0.019 4.019 5 N -0.340 5.340 6 C 0.364 3.636 7 O -0.453 6.453 8 C -0.223 4.223 9 C 0.165 3.835 10 F -0.101 7.101 11 C -0.198 4.198 12 C 0.171 3.829 13 F -0.088 7.088 14 C -0.198 4.198 15 C 0.165 3.835 16 F -0.101 7.101 17 C -0.003 4.003 18 C -0.117 4.117 19 H 0.085 0.915 20 C 0.039 3.961 21 N -0.393 5.393 22 C -0.372 4.372 23 H 0.099 0.901 24 C -0.272 4.272 25 N -0.624 5.624 26 Si 0.803 3.197 27 H -0.213 1.213 28 H -0.226 1.226 29 H -0.191 1.191 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.209 0.791 36 H 0.209 0.791 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.201 0.799 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.168 11.137 29.034 31.119 hybrid contribution 0.297 -0.890 -1.629 1.880 sum 1.464 10.246 27.405 29.295 Atomic orbital electron populations 1.21873 0.92177 1.02792 1.03141 1.22046 0.97783 0.99298 0.91453 0.88615 1.22842 0.85426 0.96162 0.97441 1.49118 1.12981 1.54415 1.17504 1.17783 0.81009 0.79439 0.85330 1.90839 1.42929 1.43539 1.67999 1.19795 1.12449 0.96882 0.93173 1.16873 0.95018 0.79763 0.91851 1.91602 1.84271 1.37927 1.96318 1.21193 1.05039 0.96649 0.96943 1.16817 0.95548 0.90824 0.79715 1.91632 1.92121 1.87301 1.37699 1.21195 1.06116 1.04404 0.88112 1.16875 0.96220 0.86252 0.84199 1.91605 1.89927 1.74296 1.54253 1.22320 0.98336 0.97717 0.81931 1.22200 0.96810 0.95811 0.96857 0.91451 1.21015 0.93930 0.94833 0.86318 1.42703 1.05844 1.68109 1.22604 1.19657 0.90602 1.27542 0.99392 0.90121 1.25616 0.97318 1.03204 1.01085 1.69844 1.12472 1.50992 1.29117 0.85123 0.78152 0.77340 0.79058 1.21342 1.22621 1.19092 0.92303 0.89841 0.92022 0.88048 0.88832 0.79103 0.79107 0.90956 0.93064 0.94392 0.95015 0.79886 0.94166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.94 71.98 0.57 -1.99 16 2 C -0.09 -1.84 3.65 -9.89 -0.04 -1.87 16 3 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 4 C 0.10 2.06 6.46 86.54 0.56 2.61 16 5 N -0.61 -18.05 3.32 -811.40 -2.69 -20.74 16 6 C 0.58 18.74 6.63 86.66 0.57 19.32 16 7 O -0.57 -24.41 17.37 -4.02 -0.07 -24.48 16 8 C -0.22 -4.95 4.54 -20.02 -0.09 -5.05 16 9 C 0.19 3.35 7.29 22.66 0.17 3.51 16 10 F -0.12 -2.72 16.83 44.97 0.76 -1.97 16 11 C -0.18 -1.85 9.99 22.32 0.22 -1.62 16 12 C 0.19 1.76 7.30 22.44 0.16 1.92 16 13 F -0.11 -0.95 17.26 44.97 0.78 -0.17 16 14 C -0.18 -1.85 9.99 22.32 0.22 -1.63 16 15 C 0.18 3.35 7.29 22.66 0.17 3.51 16 16 F -0.12 -2.74 16.83 44.97 0.76 -1.98 16 17 C 0.12 4.21 6.34 86.50 0.55 4.76 16 18 C -0.10 -3.07 3.11 -9.89 -0.03 -3.10 16 19 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 20 C 0.17 6.21 4.39 86.38 0.38 6.59 16 21 N -0.75 -38.22 5.46 -343.44 -1.87 -40.09 16 22 C -0.24 -13.41 9.99 84.03 0.84 -12.57 16 23 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 24 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 25 N -0.97 -61.46 13.06 21.65 0.28 -61.17 16 26 Si 0.97 46.74 29.55 68.60 2.03 48.77 16 27 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 28 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 29 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 30 H 0.06 1.15 6.86 -2.39 -0.02 1.13 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.23 6.71 -2.39 -0.02 1.22 16 33 H 0.10 1.49 7.44 -2.38 -0.02 1.47 16 34 H 0.09 1.65 7.84 -2.39 -0.02 1.63 16 35 H 0.19 0.91 8.06 -2.91 -0.02 0.88 16 36 H 0.19 0.92 8.06 -2.91 -0.02 0.90 16 37 H 0.07 2.66 7.78 -2.39 -0.02 2.65 16 38 H 0.05 2.16 7.89 -2.38 -0.02 2.14 16 39 H 0.04 1.38 6.58 -2.38 -0.02 1.37 16 40 H 0.03 1.17 6.89 -2.39 -0.02 1.15 16 41 H 0.37 20.62 7.56 -92.71 -0.70 19.92 16 42 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -76.25 363.61 5.07 -71.18 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.38 Total: 20.48 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 4.72 Total: 10.17 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -4.28 Total: -122.00 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.07 Total: -24.48 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 2.29 Total: -4.12 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -76.25 5.07 -71.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271659267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.698 kcal (2) G-P(sol) polarization free energy of solvation -76.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds