Wall clock time and date at job start Wed Apr 1 2020 02:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.91529 * 2 1 4 4 C 1.54904 * 111.00306 * 123.90647 * 2 1 3 5 5 N 1.47422 * 104.83635 * 81.06214 * 4 2 1 6 6 C 1.34780 * 125.65232 * 204.16456 * 5 4 2 7 7 O 1.21569 * 119.99407 * 354.73683 * 6 5 4 8 8 C 1.47728 * 120.00225 * 174.73664 * 6 5 4 9 9 C 1.39631 * 120.09855 * 7.65857 * 8 6 5 10 10 C 1.38078 * 119.89436 * 179.74757 * 9 8 6 11 11 F 1.35105 * 119.94769 * 180.25460 * 10 9 8 12 12 C 1.38781 * 120.10229 * 0.53085 * 10 9 8 13 13 F 1.35097 * 119.89830 * 179.76546 * 12 10 9 14 14 C 1.38781 * 120.20081 * 359.74598 * 12 10 9 15 15 F 1.35102 * 119.94924 * 179.97438 * 14 12 10 16 16 C 1.38070 * 120.10438 * 359.97438 * 14 12 10 17 17 C 1.47021 * 108.70242 * 24.12979 * 5 4 2 18 18 C 1.54328 * 107.27108 * 358.93754 * 17 5 4 19 19 H 1.09004 * 110.71799 * 96.17093 * 18 17 5 20 20 C 1.53000 * 110.72350 * 219.26502 * 18 17 5 21 21 N 1.46499 * 109.47207 * 291.16189 * 20 18 17 22 22 C 1.36937 * 119.99696 * 179.97438 * 21 20 18 23 23 H 1.07990 * 120.00288 * 0.02562 * 22 21 20 24 24 C 1.38817 * 119.99724 * 179.97438 * 22 21 20 25 25 N 1.31624 * 119.99901 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99712 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47483 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.46943 * 120.00731 * 26 24 22 29 29 H 1.48512 * 109.47087 * 240.00293 * 26 24 22 30 30 H 1.08997 * 109.47113 * 183.89602 * 1 2 3 31 31 H 1.08997 * 109.47310 * 303.90468 * 1 2 3 32 32 H 1.09005 * 109.46863 * 63.90342 * 1 2 3 33 33 H 1.09004 * 110.36435 * 322.22664 * 4 2 1 34 34 H 1.08999 * 110.46127 * 199.95098 * 4 2 1 35 35 H 1.07997 * 120.05620 * 0.02562 * 9 8 6 36 36 H 1.08003 * 120.05472 * 180.02562 * 16 14 12 37 37 H 1.09000 * 109.88568 * 239.52414 * 17 5 4 38 38 H 1.08998 * 110.01434 * 118.43208 * 17 5 4 39 39 H 1.08998 * 109.46542 * 51.16193 * 20 18 17 40 40 H 1.08994 * 109.47060 * 171.15426 * 20 18 17 41 41 H 0.97000 * 119.99600 * 359.97438 * 21 20 18 42 42 H 0.97000 * 119.99252 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0853 -0.8067 1.2002 5 7 2.0139 -2.2159 0.7732 6 6 1.9457 -3.2829 1.5939 7 8 2.0358 -3.1313 2.7967 8 6 1.7614 -4.6366 1.0317 9 6 1.8175 -4.8349 -0.3493 10 6 1.6500 -6.1028 -0.8698 11 9 1.7092 -6.2967 -2.2056 12 6 1.4151 -7.1773 -0.0235 13 9 1.2470 -8.4152 -0.5375 14 6 1.3527 -6.9839 1.3494 15 9 1.1233 -8.0335 2.1686 16 6 1.5248 -5.7207 1.8794 17 6 2.0285 -2.2647 -0.6961 18 6 2.0861 -0.8079 -1.2023 19 1 3.1133 -0.5160 -1.4210 20 6 1.2000 -0.6282 -2.4365 21 7 1.7836 -1.3550 -3.5667 22 6 1.1604 -1.3393 -4.7860 23 1 0.2391 -0.7909 -4.9146 24 6 1.7137 -2.0275 -5.8571 25 7 2.8370 -2.6956 -5.7005 26 14 0.8641 -2.0055 -7.5205 27 1 -0.3727 -1.1882 -7.4339 28 1 1.7759 -1.4171 -8.5343 29 1 0.5140 -3.3936 -7.9159 30 1 -0.3633 -1.0253 0.0698 31 1 -0.3634 0.5732 0.8529 32 1 -0.3633 0.4521 -0.9230 33 1 1.4671 -0.6462 2.0836 34 1 3.1180 -0.5240 1.4043 35 1 1.9962 -3.9987 -1.0090 36 1 1.4766 -5.5712 2.9479 37 1 1.1218 -2.7479 -1.0601 38 1 2.9049 -2.8124 -1.0425 39 1 0.2039 -1.0190 -2.2286 40 1 1.1304 0.4313 -2.6827 41 1 2.6114 -1.8473 -3.4513 42 1 3.2233 -3.1768 -6.4489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271674202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:00 Heat of formation + Delta-G solvation = -103.338152 kcal Electronic energy + Delta-G solvation = -30341.937564 eV Core-core repulsion = 25680.968738 eV Total energy + Delta-G solvation = -4660.968825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 10.96 seconds Orbital eigenvalues (eV) -49.96037 -49.31429 -48.60911 -40.92694 -38.86920 -37.80089 -34.79144 -33.30906 -31.68959 -30.94182 -30.67090 -29.15696 -27.07322 -25.86610 -24.43498 -23.56792 -23.03955 -21.69017 -20.32328 -19.54682 -18.56038 -18.06311 -17.97737 -17.13088 -17.00500 -16.69029 -16.38747 -15.79717 -15.61057 -15.54658 -15.19825 -15.07740 -14.92731 -14.56779 -14.47329 -13.99660 -13.92577 -13.44331 -13.33977 -13.05793 -12.88125 -12.83132 -12.38355 -12.23738 -12.14198 -11.89977 -11.81572 -11.56959 -11.10715 -10.90210 -10.66225 -10.49519 -10.43186 -10.20367 -10.03234 -9.76576 -9.27594 -9.24574 -8.96426 -8.78315 -7.02626 -5.84761 -3.14316 0.03346 0.46766 2.23798 2.62348 3.08399 3.16411 3.39268 3.45282 3.47432 3.87125 3.89446 3.97844 4.11314 4.39551 4.46650 4.55896 4.61504 4.84502 5.03670 5.08236 5.14631 5.19879 5.42236 5.43186 5.43941 5.48654 5.52676 5.57011 5.62688 5.69736 5.74049 5.89841 5.99032 6.00223 6.07852 6.22410 6.26438 6.31058 6.57069 6.67721 7.24839 7.63965 7.85074 8.33485 9.45518 9.99746 10.33882 11.37801 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.008907 B = 0.004241 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3142.977998 B = 6600.263673 C = 9329.663030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.095 0.905 4 C 0.112 3.888 5 N -0.604 5.604 6 C 0.578 3.422 7 O -0.534 6.534 8 C -0.084 4.084 9 C -0.139 4.139 10 C 0.103 3.897 11 F -0.104 7.104 12 C 0.052 3.948 13 F -0.113 7.113 14 C 0.088 3.912 15 F -0.117 7.117 16 C -0.081 4.081 17 C 0.088 3.912 18 C -0.102 4.102 19 H 0.090 0.910 20 C 0.161 3.839 21 N -0.734 5.734 22 C -0.243 4.243 23 H 0.071 0.929 24 C -0.009 4.009 25 N -0.930 5.930 26 Si 0.905 3.095 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.197 0.803 36 H 0.165 0.835 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.027 0.973 40 H 0.026 0.974 41 H 0.383 0.617 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.027 -1.611 15.950 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.113 0.887 4 C -0.010 4.010 5 N -0.337 5.337 6 C 0.367 3.633 7 O -0.412 6.412 8 C -0.088 4.088 9 C -0.157 4.157 10 C 0.082 3.918 11 F -0.082 7.082 12 C 0.031 3.969 13 F -0.092 7.092 14 C 0.068 3.932 15 F -0.096 7.096 16 C -0.101 4.101 17 C -0.034 4.034 18 C -0.121 4.121 19 H 0.109 0.891 20 C 0.034 3.966 21 N -0.379 5.379 22 C -0.374 4.374 23 H 0.089 0.911 24 C -0.206 4.206 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.213 0.787 36 H 0.182 0.818 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.216 0.784 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.120 -1.652 16.460 16.678 hybrid contribution -0.145 -0.891 -1.327 1.605 sum -2.265 -2.543 15.133 15.512 Atomic orbital electron populations 1.21794 0.93987 1.02168 1.02206 1.22375 0.96750 0.99204 0.93444 0.88727 1.22384 1.01395 0.79188 0.98023 1.48372 1.71430 1.06442 1.07419 1.17446 0.77342 0.82952 0.85561 1.90799 1.50930 1.85541 1.13963 1.19508 1.02898 0.94060 0.92315 1.23097 0.98131 0.97933 0.96534 1.17283 1.03447 0.92464 0.78569 1.91690 1.93262 1.95526 1.27733 1.17919 1.07331 0.81013 0.90674 1.91578 1.92714 1.37936 1.86928 1.17082 1.05297 0.85358 0.85477 1.91578 1.91969 1.55023 1.70995 1.21135 0.97898 0.88656 1.02428 1.22759 1.02627 0.99395 0.78570 1.22549 1.01745 0.92335 0.95463 0.89133 1.20735 0.94335 0.95962 0.85596 1.42377 1.28638 1.60313 1.06538 1.19218 1.04905 1.26173 0.87132 0.91104 1.24721 0.97467 1.00221 0.98157 1.69647 1.20152 1.36968 1.31095 0.86162 0.78583 0.77284 0.84405 1.20546 1.21845 1.21791 0.92552 0.92784 0.91229 0.90102 0.90940 0.78704 0.81755 0.89294 0.89796 0.95500 0.95575 0.78390 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.16 37.16 0.30 -1.16 16 2 C -0.10 -0.99 3.54 -88.47 -0.31 -1.31 16 3 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 4 C 0.11 1.17 6.35 -2.53 -0.02 1.15 16 5 N -0.60 -7.24 3.31 -175.73 -0.58 -7.82 16 6 C 0.58 7.58 7.80 -12.38 -0.10 7.49 16 7 O -0.53 -8.19 16.67 5.31 0.09 -8.10 16 8 C -0.08 -1.01 5.87 -104.98 -0.62 -1.62 16 9 C -0.14 -1.72 8.57 -39.12 -0.34 -2.06 16 10 C 0.10 1.39 7.29 -39.44 -0.29 1.10 16 11 F -0.10 -1.66 17.17 2.25 0.04 -1.62 16 12 C 0.05 0.67 7.32 -39.18 -0.29 0.38 16 13 F -0.11 -1.56 17.08 2.25 0.04 -1.52 16 14 C 0.09 1.02 7.29 -39.44 -0.29 0.73 16 15 F -0.12 -1.37 17.17 2.25 0.04 -1.33 16 16 C -0.08 -0.89 9.56 -39.12 -0.37 -1.27 16 17 C 0.09 1.10 3.95 -3.06 -0.01 1.09 16 18 C -0.10 -1.30 2.84 -88.78 -0.25 -1.55 16 19 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 20 C 0.16 2.71 4.45 -4.04 -0.02 2.69 16 21 N -0.73 -16.44 5.48 -59.91 -0.33 -16.77 16 22 C -0.24 -6.32 9.99 -15.06 -0.15 -6.47 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 24 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 25 N -0.93 -26.64 13.06 55.49 0.72 -25.91 16 26 Si 0.90 21.57 29.55 -169.99 -5.02 16.55 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 30 H 0.06 0.63 7.91 -51.93 -0.41 0.22 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.75 6.80 -51.93 -0.35 0.39 16 33 H 0.08 0.84 8.00 -51.93 -0.42 0.42 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.20 2.49 2.76 -57.74 -0.16 2.33 16 36 H 0.16 1.62 7.67 -52.48 -0.40 1.21 16 37 H 0.09 1.18 6.23 -51.93 -0.32 0.86 16 38 H 0.08 1.05 6.81 -51.93 -0.35 0.70 16 39 H 0.03 0.46 6.79 -51.93 -0.35 0.11 16 40 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 41 H 0.38 8.95 7.60 -40.82 -0.31 8.64 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 356.72 15.07 5.38 5.38 Total: -1.00 -29.81 356.72 -7.21 -37.02 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.74 Total: 5.29 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -2.84 Total: -1.16 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.19 Total: -50.51 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.09 Total: -8.10 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.12 Total: -4.47 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.81 -7.21 -37.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271674202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.317 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.96 seconds