Wall clock time and date at job start Wed Apr 1 2020 02:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.64067 * 2 1 4 4 C 1.54321 * 110.72160 * 123.14113 * 2 1 3 5 5 N 1.47019 * 107.27604 * 140.55564 * 4 2 1 6 6 C 1.34774 * 125.65094 * 181.07995 * 5 4 2 7 7 O 1.21569 * 119.99828 * 174.31211 * 6 5 4 8 8 C 1.47729 * 120.00101 * 354.31575 * 6 5 4 9 9 C 1.39628 * 120.10136 * 6.98655 * 8 6 5 10 10 C 1.38078 * 119.90217 * 179.72667 * 9 8 6 11 11 F 1.35100 * 119.95215 * 180.31991 * 10 9 8 12 12 C 1.38784 * 120.09446 * 0.57022 * 10 9 8 13 13 F 1.35106 * 119.89716 * 179.72319 * 12 10 9 14 14 C 1.38779 * 120.20683 * 359.70737 * 12 10 9 15 15 F 1.35101 * 119.95329 * 180.02562 * 14 12 10 16 16 C 1.38080 * 120.09982 * 359.97438 * 14 12 10 17 17 C 1.47428 * 108.69957 * 1.05981 * 5 4 2 18 18 C 1.54906 * 104.83188 * 335.87141 * 17 5 4 19 19 H 1.08996 * 111.00693 * 278.93426 * 18 17 5 20 20 C 1.53005 * 111.00227 * 155.08616 * 18 17 5 21 21 N 1.46496 * 109.47492 * 66.45231 * 20 18 17 22 22 C 1.36932 * 120.00087 * 180.02562 * 21 20 18 23 23 H 1.08000 * 119.99984 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99976 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99808 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00164 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47187 * 89.99556 * 26 24 22 28 28 H 1.48502 * 109.47069 * 209.99871 * 26 24 22 29 29 H 1.48501 * 109.46949 * 329.99855 * 26 24 22 30 30 H 1.08998 * 109.46953 * 298.31654 * 1 2 3 31 31 H 1.08996 * 109.46819 * 58.31449 * 1 2 3 32 32 H 1.08998 * 109.46695 * 178.31164 * 1 2 3 33 33 H 1.09001 * 109.88519 * 21.13432 * 4 2 1 34 34 H 1.09004 * 109.88558 * 259.97564 * 4 2 1 35 35 H 1.08002 * 120.04929 * 0.02562 * 9 8 6 36 36 H 1.08001 * 120.05190 * 180.02562 * 16 14 12 37 37 H 1.09004 * 110.36338 * 94.71076 * 17 5 4 38 38 H 1.09001 * 110.36736 * 217.03211 * 17 5 4 39 39 H 1.09006 * 109.46841 * 186.45765 * 20 18 17 40 40 H 1.09003 * 109.46668 * 306.44845 * 20 18 17 41 41 H 0.97006 * 119.99493 * 0.02562 * 21 20 18 42 42 H 0.97003 * 119.99596 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0761 -0.7891 1.2086 5 7 3.2445 -1.5495 0.7417 6 6 3.9917 -2.3818 1.4936 7 8 4.8745 -3.0395 0.9778 8 6 3.7378 -2.4951 2.9445 9 6 2.6353 -1.8555 3.5145 10 6 2.3987 -1.9688 4.8702 11 9 1.3286 -1.3556 5.4217 12 6 3.2614 -2.7073 5.6678 13 9 3.0293 -2.8109 6.9948 14 6 4.3618 -3.3401 5.1067 15 9 5.1980 -4.0581 5.8879 16 6 4.6026 -3.2377 3.7509 17 6 3.4633 -1.2510 -0.6854 18 6 2.0790 -0.7975 -1.2124 19 1 1.4452 -1.6560 -1.4346 20 6 2.2279 0.1038 -2.4398 21 7 2.7775 -0.6739 -3.5530 22 6 3.0000 -0.0737 -4.7635 23 1 2.7698 0.9730 -4.8977 24 6 3.5203 -0.8107 -5.8185 25 7 3.8003 -2.0863 -5.6550 26 14 3.8231 0.0079 -7.4700 27 1 5.2005 0.5616 -7.5030 28 1 3.6660 -0.9937 -8.5551 29 1 2.8432 1.1067 -7.6649 30 1 -0.3633 0.4875 0.9047 31 1 -0.3633 0.5398 -0.8745 32 1 -0.3633 -1.0272 -0.0303 33 1 1.3130 -1.4731 1.5801 34 1 2.3741 -0.0990 1.9979 35 1 1.9658 -1.2769 2.8952 36 1 5.4589 -3.7308 3.3149 37 1 4.1932 -0.4492 -0.7976 38 1 3.7960 -2.1447 -1.2132 39 1 1.2518 0.4999 -2.7202 40 1 2.9009 0.9285 -2.2054 41 1 2.9839 -1.6140 -3.4325 42 1 4.1643 -2.6012 -6.3922 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271674204.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:28 Heat of formation + Delta-G solvation = -104.795042 kcal Electronic energy + Delta-G solvation = -29421.106942 eV Core-core repulsion = 24760.074941 eV Total energy + Delta-G solvation = -4661.032001 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 17.50 seconds Orbital eigenvalues (eV) -50.24386 -49.64231 -48.92368 -40.94840 -38.90545 -37.82043 -34.89080 -33.21737 -31.84277 -31.23942 -31.10769 -29.05648 -27.02679 -25.87747 -24.38148 -23.75933 -23.01269 -21.34556 -20.58310 -20.09287 -18.71505 -18.32589 -18.23004 -17.28194 -17.16810 -16.77972 -16.51350 -15.93228 -15.87250 -15.51816 -15.40112 -15.35359 -14.89841 -14.79489 -14.56353 -14.26302 -13.83694 -13.39026 -13.37355 -13.22619 -13.09155 -12.94934 -12.52271 -12.40646 -12.21003 -12.12398 -11.89865 -11.38836 -11.10449 -10.91324 -10.68979 -10.50953 -10.48431 -10.21649 -10.04627 -9.70548 -9.54245 -9.48473 -8.91800 -8.79994 -6.97188 -5.79186 -3.08999 -0.18468 0.19617 2.08325 2.54588 2.84359 3.04219 3.42127 3.47047 3.49005 3.57396 3.63416 3.78179 3.87786 4.24745 4.35886 4.46528 4.61495 4.65056 4.83565 4.88542 5.03673 5.07273 5.13545 5.21228 5.35288 5.36523 5.42314 5.52441 5.60319 5.67663 5.86043 5.91102 5.97792 6.02240 6.07382 6.11214 6.30023 6.30345 6.61838 6.74101 7.26159 7.66754 7.85494 8.38831 9.50305 10.06271 10.40308 11.43323 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.020727 B = 0.002358 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.548436 B =11872.117842 C =13061.471848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.092 0.908 4 C 0.086 3.914 5 N -0.607 5.607 6 C 0.571 3.429 7 O -0.519 6.519 8 C -0.075 4.075 9 C -0.145 4.145 10 C 0.094 3.906 11 F -0.115 7.115 12 C 0.052 3.948 13 F -0.114 7.114 14 C 0.093 3.907 15 F -0.114 7.114 16 C -0.078 4.078 17 C 0.115 3.885 18 C -0.101 4.101 19 H 0.088 0.912 20 C 0.166 3.834 21 N -0.733 5.733 22 C -0.243 4.243 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.192 0.808 36 H 0.169 0.831 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.025 0.975 40 H 0.022 0.978 41 H 0.384 0.616 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.207 1.512 24.254 24.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.110 0.890 4 C -0.036 4.036 5 N -0.339 5.339 6 C 0.359 3.641 7 O -0.396 6.396 8 C -0.079 4.079 9 C -0.163 4.163 10 C 0.074 3.926 11 F -0.093 7.093 12 C 0.030 3.970 13 F -0.092 7.092 14 C 0.073 3.927 15 F -0.093 7.093 16 C -0.097 4.097 17 C -0.006 4.006 18 C -0.120 4.120 19 H 0.106 0.894 20 C 0.038 3.962 21 N -0.377 5.377 22 C -0.374 4.374 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.208 0.792 36 H 0.186 0.814 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.043 0.957 40 H 0.040 0.960 41 H 0.218 0.782 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.688 1.215 23.976 24.461 hybrid contribution 0.172 0.027 -0.210 0.273 sum -4.517 1.242 23.766 24.223 Atomic orbital electron populations 1.21775 0.93468 1.02420 1.02356 1.22300 0.96602 0.99711 0.93263 0.89009 1.22715 0.87946 0.94922 0.98053 1.48395 1.29436 1.43565 1.12528 1.17445 0.82006 0.79772 0.84890 1.90869 1.32161 1.43581 1.72952 1.19639 0.95255 0.98596 0.94421 1.22916 0.99530 1.00622 0.93219 1.17185 0.86607 0.97509 0.91326 1.91595 1.51879 1.80278 1.85583 1.17869 0.97005 1.03034 0.79089 1.91584 1.93991 1.94446 1.29174 1.17131 0.89736 0.96691 0.89153 1.91599 1.68953 1.74931 1.73788 1.21273 1.00878 0.97667 0.89929 1.22460 0.97964 1.02262 0.77924 1.22692 0.95192 0.99341 0.94823 0.89400 1.20577 0.96721 0.92877 0.86028 1.42357 1.76803 1.10469 1.08118 1.19186 1.35602 0.94365 0.88244 0.91162 1.24753 1.01894 0.95844 0.98333 1.69658 1.49855 1.06548 1.31849 0.86197 0.77985 0.78110 0.83916 1.21688 1.21766 1.20771 0.92486 0.91348 0.92287 0.90122 0.90279 0.79203 0.81386 0.90406 0.89199 0.95684 0.96036 0.78188 0.93424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.13 37.16 0.34 -0.81 16 2 C -0.10 -0.94 3.01 -88.79 -0.27 -1.21 16 3 H 0.09 0.83 8.04 -51.93 -0.42 0.41 16 4 C 0.09 0.72 4.46 -3.07 -0.01 0.71 16 5 N -0.61 -7.32 3.33 -176.24 -0.59 -7.91 16 6 C 0.57 7.47 7.80 -12.38 -0.10 7.37 16 7 O -0.52 -8.81 16.59 5.31 0.09 -8.72 16 8 C -0.08 -0.74 5.87 -104.98 -0.62 -1.36 16 9 C -0.14 -1.14 8.58 -39.12 -0.34 -1.48 16 10 C 0.09 0.80 7.29 -39.44 -0.29 0.51 16 11 F -0.12 -1.01 17.17 2.25 0.04 -0.97 16 12 C 0.05 0.48 7.32 -39.18 -0.29 0.19 16 13 F -0.11 -1.16 17.09 2.25 0.04 -1.12 16 14 C 0.09 0.86 7.29 -39.44 -0.29 0.57 16 15 F -0.11 -1.13 17.17 2.25 0.04 -1.09 16 16 C -0.08 -0.73 9.56 -39.12 -0.37 -1.10 16 17 C 0.11 1.70 6.11 -2.53 -0.02 1.68 16 18 C -0.10 -1.39 2.55 -88.47 -0.23 -1.61 16 19 H 0.09 1.27 8.04 -51.93 -0.42 0.86 16 20 C 0.17 2.96 5.71 -4.04 -0.02 2.94 16 21 N -0.73 -17.53 5.45 -59.91 -0.33 -17.86 16 22 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 23 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 26 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 33 H 0.08 0.55 6.42 -51.93 -0.33 0.21 16 34 H 0.08 0.50 6.74 -51.93 -0.35 0.15 16 35 H 0.19 1.18 2.73 -58.39 -0.16 1.02 16 36 H 0.17 1.53 7.66 -52.49 -0.40 1.13 16 37 H 0.08 1.20 8.00 -51.93 -0.42 0.78 16 38 H 0.09 1.58 7.98 -51.93 -0.41 1.17 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16 41 H 0.38 9.77 7.53 -40.82 -0.31 9.47 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 360.88 15.07 5.44 5.44 Total: -1.00 -31.60 360.88 -7.18 -38.78 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -4.87 Total: 4.25 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -2.74 Total: -0.76 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.19 Total: -52.84 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.72 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.12 Total: -3.18 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.60 -7.18 -38.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271674204.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.016 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.50 seconds