Wall clock time and date at job start Wed Apr 1 2020 00:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29938 * 126.28686 * 2 1 4 4 O 1.21302 * 110.25375 * 179.97438 * 3 2 1 5 5 C 1.33639 * 109.81122 * 0.02562 * 4 3 2 6 6 C 1.50696 * 126.55487 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47252 * 270.02579 * 6 5 4 8 8 C 1.46033 * 124.23404 * 270.71062 * 7 6 5 9 9 C 1.54456 * 105.94836 * 163.13547 * 8 7 6 10 10 F 1.39897 * 114.10281 * 147.28771 * 9 8 7 11 11 C 1.53687 * 108.86749 * 274.96303 * 9 8 7 12 12 N 1.47028 * 108.04370 * 124.15220 * 11 9 8 13 13 C 1.46895 * 110.99796 * 123.61015 * 12 11 9 14 14 C 1.50706 * 109.47182 * 170.00088 * 13 12 11 15 15 H 1.08005 * 119.99758 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00102 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 C 1.47147 * 109.21866 * 0.90403 * 12 11 9 23 23 C 1.53843 * 106.75459 * 341.74789 * 22 12 11 24 24 F 1.39902 * 112.67439 * 150.08267 * 23 22 12 25 25 C 1.34370 * 124.33916 * 89.97537 * 7 6 5 26 26 O 1.21285 * 124.86940 * 0.37931 * 25 7 6 27 27 N 1.31132 * 106.89677 * 0.22474 * 5 4 3 28 28 H 1.09007 * 109.46562 * 90.03334 * 1 2 3 29 29 H 1.09001 * 109.46950 * 210.02232 * 1 2 3 30 30 H 1.08997 * 109.47194 * 330.02979 * 1 2 3 31 31 H 1.09001 * 109.47140 * 150.02512 * 6 5 4 32 32 H 1.08998 * 109.47040 * 30.03088 * 6 5 4 33 33 H 1.09000 * 110.81067 * 43.58978 * 8 7 6 34 34 H 1.09001 * 109.29769 * 281.87875 * 8 7 6 35 35 H 1.08999 * 109.75649 * 4.50022 * 11 9 8 36 36 H 1.09004 * 109.75669 * 243.80628 * 11 9 8 37 37 H 1.09001 * 109.47613 * 50.00434 * 13 12 11 38 38 H 1.09006 * 109.47521 * 290.00051 * 13 12 11 39 39 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 40 40 H 1.08997 * 110.00090 * 101.07175 * 22 12 11 41 41 H 1.09001 * 110.00459 * 222.42133 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5299 -0.6211 0.0003 6 6 4.7970 -1.4369 0.0003 7 7 5.2080 -1.7006 -1.3809 8 6 4.7730 -2.8559 -2.1612 9 6 5.0784 -2.5115 -3.6356 10 9 5.4253 -3.6165 -4.4203 11 6 3.9053 -1.7016 -4.2100 12 7 4.4395 -0.4369 -4.7363 13 6 4.0911 -0.2674 -6.1532 14 6 4.4356 1.1329 -6.5912 15 1 4.8703 1.8273 -5.8873 16 6 4.1958 1.5275 -7.8903 17 7 3.6661 0.6821 -8.7472 18 14 4.6222 3.2634 -8.4329 19 1 4.2701 3.4348 -9.8653 20 1 3.8585 4.2394 -7.6147 21 1 6.0775 3.4957 -8.2502 22 6 5.8983 -0.4104 -4.5450 23 6 6.2253 -1.4716 -3.4803 24 9 7.4954 -2.0330 -3.6507 25 6 6.0209 -0.9039 -2.0951 26 8 6.5188 0.1238 -1.6865 27 7 2.3031 -1.0841 -0.0053 28 1 -0.3633 -0.0006 -1.0278 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 4.6205 -2.3822 0.5136 32 1 5.5841 -0.8857 0.5147 33 1 3.7056 -3.0328 -2.0290 34 1 5.3421 -3.7332 -1.8536 35 1 3.1794 -1.4959 -3.4234 36 1 3.4285 -2.2629 -5.0136 37 1 3.0229 -0.4376 -6.2877 38 1 4.6517 -0.9841 -6.7535 39 1 3.4444 -0.2191 -8.4653 40 1 6.4014 -0.6537 -5.4808 41 1 6.2111 0.5745 -4.1983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:08 Heat of formation + Delta-G solvation = -28.375407 kcal Electronic energy + Delta-G solvation = -31506.573171 eV Core-core repulsion = 26868.774936 eV Total energy + Delta-G solvation = -4637.798235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.48658 -47.47801 -45.76719 -40.99544 -37.84436 -36.78480 -36.18729 -34.12090 -33.06258 -31.34412 -29.70422 -29.42138 -28.22151 -26.60992 -25.57734 -23.90040 -23.21466 -22.12854 -21.30871 -21.08088 -20.23408 -18.38238 -18.02880 -17.47305 -17.10136 -16.77904 -16.57484 -16.23355 -15.60473 -15.46968 -15.26369 -14.72213 -14.48972 -14.19591 -13.98670 -13.91469 -13.79565 -13.77835 -13.62164 -13.25364 -13.14042 -13.12840 -13.00034 -12.54960 -12.30165 -12.26017 -11.82286 -11.65713 -11.38554 -11.30584 -11.18247 -10.84963 -10.72142 -10.55883 -10.25094 -10.10318 -9.88939 -9.51132 -8.80666 -8.47853 -7.78314 -6.46334 -4.16977 0.80810 1.85514 1.98017 2.38600 2.63360 3.29382 3.33824 3.43282 3.44730 3.46143 3.62830 3.63409 3.83466 4.01867 4.17237 4.45134 4.50050 4.52898 4.59385 4.69994 4.83249 4.97897 5.07235 5.15576 5.19148 5.29997 5.31283 5.33063 5.60520 5.64658 5.69421 5.75430 5.79588 5.92611 6.18370 6.34435 6.61488 6.77123 7.39032 7.52752 7.56671 7.96233 8.07140 8.44504 8.75169 9.53564 10.92969 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.009793 B = 0.004430 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.375070 B = 6319.574462 C = 7726.317474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.165 3.835 3 N -0.375 5.375 4 O 0.097 5.903 5 C 0.153 3.847 6 C 0.226 3.774 7 N -0.607 5.607 8 C 0.093 3.907 9 C 0.070 3.930 10 F -0.163 7.163 11 C 0.030 3.970 12 N -0.510 5.510 13 C 0.178 3.822 14 C -0.594 4.594 15 H 0.059 0.941 16 C 0.018 3.982 17 N -0.910 5.910 18 Si 1.072 2.928 19 H -0.282 1.282 20 H -0.286 1.286 21 H -0.286 1.286 22 C 0.055 3.945 23 C 0.061 3.939 24 F -0.160 7.160 25 C 0.532 3.468 26 O -0.475 6.475 27 N -0.469 5.469 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.027 0.973 38 H -0.009 1.009 39 H 0.266 0.734 40 H 0.080 0.920 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.248 -9.583 19.658 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.107 4.107 3 N -0.080 5.080 4 O 0.036 5.964 5 C -0.069 4.069 6 C 0.102 3.898 7 N -0.343 5.343 8 C -0.031 4.031 9 C 0.049 3.951 10 F -0.143 7.143 11 C -0.099 4.099 12 N -0.234 5.234 13 C 0.053 3.947 14 C -0.632 4.632 15 H 0.077 0.923 16 C -0.186 4.186 17 N -0.546 5.546 18 Si 0.900 3.100 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.213 1.213 22 C -0.074 4.074 23 C 0.038 3.962 24 F -0.140 7.140 25 C 0.316 3.684 26 O -0.345 6.345 27 N -0.205 5.205 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.152 0.848 32 H 0.145 0.855 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.045 0.955 38 H 0.008 0.992 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.846 -7.060 18.866 20.228 hybrid contribution 0.533 -2.043 0.680 2.218 sum -1.313 -9.103 19.546 21.602 Atomic orbital electron populations 1.20154 0.82789 1.04513 1.04632 1.25907 1.00647 0.83359 1.00817 1.74686 0.89373 1.23953 1.19993 1.85373 1.22255 1.24390 1.64333 1.29264 0.97290 0.82878 0.97517 1.19774 0.88307 0.99015 0.82743 1.47861 1.48304 1.25108 1.13044 1.22489 1.03360 0.88935 0.88319 1.22890 0.96450 0.84734 0.90990 1.92933 1.92974 1.53487 1.74925 1.23347 0.94601 0.90671 1.01282 1.63390 1.08203 1.28392 1.23395 1.20182 0.95913 0.98172 0.80406 1.21913 1.45908 0.96984 0.98428 0.92269 1.25869 0.94214 1.05658 0.92845 1.70823 1.39612 1.06887 1.37240 0.83490 0.76415 0.73965 0.76169 1.20730 1.21273 1.21258 1.23034 0.90772 0.97649 0.95912 1.22762 0.80753 0.95663 0.97053 1.92935 1.39187 1.85603 1.96238 1.20421 0.78435 0.83554 0.86006 1.90789 1.49030 1.21461 1.73243 1.71831 0.99494 1.29761 1.19392 0.89061 0.89068 0.89481 0.84752 0.85461 0.87451 0.88653 0.89191 0.90195 0.95501 0.99180 0.92371 0.90227 0.87764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.51 36.01 0.38 -0.15 16 2 C 0.17 2.06 8.22 -156.37 -1.28 0.78 16 3 N -0.37 -5.53 12.16 30.90 0.38 -5.15 16 4 O 0.10 1.39 11.31 18.11 0.20 1.59 16 5 C 0.15 1.76 8.10 -13.06 -0.11 1.65 16 6 C 0.23 1.83 6.54 -5.20 -0.03 1.79 16 7 N -0.61 -6.76 2.89 -174.48 -0.50 -7.26 16 8 C 0.09 0.92 6.43 -3.53 -0.02 0.90 16 9 C 0.07 1.00 1.92 -88.12 -0.17 0.83 16 10 F -0.16 -2.48 17.08 2.25 0.04 -2.44 16 11 C 0.03 0.49 6.21 -3.40 -0.02 0.47 16 12 N -0.51 -10.71 5.11 -234.76 -1.20 -11.91 16 13 C 0.18 4.46 3.58 -4.98 -0.02 4.45 16 14 C -0.59 -16.64 8.78 -34.44 -0.30 -16.94 16 15 H 0.06 1.68 7.74 -52.48 -0.41 1.28 16 16 C 0.02 0.52 5.46 -17.82 -0.10 0.42 16 17 N -0.91 -27.25 13.65 55.43 0.76 -26.50 16 18 Si 1.07 25.33 29.90 -169.99 -5.08 20.24 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 22 C 0.05 1.09 5.43 -3.25 -0.02 1.07 16 23 C 0.06 1.00 1.75 -89.76 -0.16 0.84 16 24 F -0.16 -2.66 16.99 2.25 0.04 -2.62 16 25 C 0.53 8.13 7.05 -10.98 -0.08 8.05 16 26 O -0.48 -8.49 17.25 5.55 0.10 -8.40 16 27 N -0.47 -5.58 11.55 -9.87 -0.11 -5.70 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.13 0.87 7.92 -51.93 -0.41 0.46 16 33 H 0.11 0.90 7.67 -51.93 -0.40 0.50 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.38 7.37 -51.93 -0.38 1.00 16 36 H 0.08 1.32 7.50 -51.93 -0.39 0.94 16 37 H 0.03 0.70 7.89 -51.93 -0.41 0.29 16 38 H -0.01 -0.25 7.74 -51.93 -0.40 -0.65 16 39 H 0.27 7.90 7.22 -40.82 -0.29 7.60 16 40 H 0.08 1.68 7.54 -51.93 -0.39 1.29 16 41 H 0.10 2.18 7.73 -51.93 -0.40 1.78 16 LS Contribution 356.22 15.07 5.37 5.37 Total: -1.00 -34.68 356.22 -6.75 -41.43 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -4.80 Total: -2.83 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -1.93 Total: 4.17 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.69 Total: -56.52 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: 0.30 Total: -6.80 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.08 Total: -5.06 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.24 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.68 -6.75 -41.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.050 kcal (2) G-P(sol) polarization free energy of solvation -34.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds