Wall clock time and date at job start Wed Apr 1 2020 00:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29938 * 126.28686 * 2 1 4 4 O 1.21302 * 110.25375 * 179.97438 * 3 2 1 5 5 C 1.33639 * 109.81122 * 0.02562 * 4 3 2 6 6 C 1.50696 * 126.55487 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47252 * 270.02579 * 6 5 4 8 8 C 1.46033 * 124.23404 * 270.71062 * 7 6 5 9 9 C 1.54456 * 105.94836 * 163.13547 * 8 7 6 10 10 F 1.39897 * 114.10281 * 147.28771 * 9 8 7 11 11 C 1.53687 * 108.86749 * 274.96303 * 9 8 7 12 12 N 1.47028 * 108.04370 * 124.15220 * 11 9 8 13 13 C 1.46895 * 110.99796 * 123.61015 * 12 11 9 14 14 C 1.50706 * 109.47182 * 170.00088 * 13 12 11 15 15 H 1.08005 * 119.99758 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00102 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 C 1.47147 * 109.21866 * 0.90403 * 12 11 9 23 23 C 1.53843 * 106.75459 * 341.74789 * 22 12 11 24 24 F 1.39902 * 112.67439 * 150.08267 * 23 22 12 25 25 C 1.34370 * 124.33916 * 89.97537 * 7 6 5 26 26 O 1.21285 * 124.86940 * 0.37931 * 25 7 6 27 27 N 1.31132 * 106.89677 * 0.22474 * 5 4 3 28 28 H 1.09007 * 109.46562 * 90.03334 * 1 2 3 29 29 H 1.09001 * 109.46950 * 210.02232 * 1 2 3 30 30 H 1.08997 * 109.47194 * 330.02979 * 1 2 3 31 31 H 1.09001 * 109.47140 * 150.02512 * 6 5 4 32 32 H 1.08998 * 109.47040 * 30.03088 * 6 5 4 33 33 H 1.09000 * 110.81067 * 43.58978 * 8 7 6 34 34 H 1.09001 * 109.29769 * 281.87875 * 8 7 6 35 35 H 1.08999 * 109.75649 * 4.50022 * 11 9 8 36 36 H 1.09004 * 109.75669 * 243.80628 * 11 9 8 37 37 H 1.09001 * 109.47613 * 50.00434 * 13 12 11 38 38 H 1.09006 * 109.47521 * 290.00051 * 13 12 11 39 39 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 40 40 H 1.08997 * 110.00090 * 101.07175 * 22 12 11 41 41 H 1.09001 * 110.00459 * 222.42133 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5299 -0.6211 0.0003 6 6 4.7970 -1.4369 0.0003 7 7 5.2080 -1.7006 -1.3809 8 6 4.7730 -2.8559 -2.1612 9 6 5.0784 -2.5115 -3.6356 10 9 5.4253 -3.6165 -4.4203 11 6 3.9053 -1.7016 -4.2100 12 7 4.4395 -0.4369 -4.7363 13 6 4.0911 -0.2674 -6.1532 14 6 4.4356 1.1329 -6.5912 15 1 4.8703 1.8273 -5.8873 16 6 4.1958 1.5275 -7.8903 17 7 3.6661 0.6821 -8.7472 18 14 4.6222 3.2634 -8.4329 19 1 4.2701 3.4348 -9.8653 20 1 3.8585 4.2394 -7.6147 21 1 6.0775 3.4957 -8.2502 22 6 5.8983 -0.4104 -4.5450 23 6 6.2253 -1.4716 -3.4803 24 9 7.4954 -2.0330 -3.6507 25 6 6.0209 -0.9039 -2.0951 26 8 6.5188 0.1238 -1.6865 27 7 2.3031 -1.0841 -0.0053 28 1 -0.3633 -0.0006 -1.0278 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 4.6205 -2.3822 0.5136 32 1 5.5841 -0.8857 0.5147 33 1 3.7056 -3.0328 -2.0290 34 1 5.3421 -3.7332 -1.8536 35 1 3.1794 -1.4959 -3.4234 36 1 3.4285 -2.2629 -5.0136 37 1 3.0229 -0.4376 -6.2877 38 1 4.6517 -0.9841 -6.7535 39 1 3.4444 -0.2191 -8.4653 40 1 6.4014 -0.6537 -5.4808 41 1 6.2111 0.5745 -4.1983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:56 Heat of formation + Delta-G solvation = -55.258792 kcal Electronic energy + Delta-G solvation = -31507.738922 eV Core-core repulsion = 26868.774936 eV Total energy + Delta-G solvation = -4638.963986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.129 amu Computer time = 17.94 seconds Orbital eigenvalues (eV) -49.75688 -48.73776 -46.70701 -42.15880 -39.32448 -37.91523 -37.12526 -35.59713 -34.60800 -32.61795 -31.06227 -30.25205 -29.49239 -27.93948 -27.04850 -25.21301 -24.67074 -23.32396 -22.59883 -22.41446 -21.38278 -19.37665 -19.32426 -18.83456 -18.38111 -18.19524 -17.79686 -17.29493 -16.84103 -16.69816 -16.56393 -15.99339 -15.72412 -15.66604 -15.33221 -15.26828 -15.11034 -15.00393 -14.74449 -14.50411 -14.37351 -14.13925 -13.93068 -13.78284 -13.61032 -13.39867 -13.30159 -13.03366 -12.94827 -12.56954 -12.49411 -12.38230 -12.19741 -11.99719 -11.96024 -11.30525 -11.03642 -10.90478 -10.66314 -10.45051 -9.54742 -8.76438 -6.47989 -0.10512 0.77312 0.98375 1.45965 1.49879 1.56936 1.77337 1.80480 2.06267 2.27537 2.46512 2.51383 2.54407 2.58998 2.88850 3.03361 3.07025 3.18702 3.36614 3.78582 3.87252 3.94544 4.14429 4.19986 4.27419 4.30795 4.33576 4.43237 4.45077 4.55150 4.55801 4.60919 4.65736 4.77763 4.80261 4.91292 5.05840 5.33292 5.51972 5.64368 5.99949 6.21134 6.43563 6.47690 7.04254 7.30542 8.63460 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.009793 B = 0.004430 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.375070 B = 6319.574462 C = 7726.317474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.162 3.838 3 N -0.411 5.411 4 O 0.067 5.933 5 C 0.157 3.843 6 C 0.223 3.777 7 N -0.593 5.593 8 C 0.101 3.899 9 C 0.076 3.924 10 F -0.167 7.167 11 C 0.027 3.973 12 N -0.522 5.522 13 C 0.193 3.807 14 C -0.607 4.607 15 H 0.048 0.952 16 C -0.028 4.028 17 N -0.931 5.931 18 Si 1.116 2.884 19 H -0.278 1.278 20 H -0.273 1.273 21 H -0.271 1.271 22 C 0.054 3.946 23 C 0.057 3.943 24 F -0.162 7.162 25 C 0.531 3.469 26 O -0.510 6.510 27 N -0.470 5.470 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.188 0.812 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.014 0.986 38 H -0.029 1.029 39 H 0.256 0.744 40 H 0.056 0.944 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.803 -11.180 21.874 24.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 N -0.121 5.121 4 O 0.012 5.988 5 C -0.066 4.066 6 C 0.100 3.900 7 N -0.327 5.327 8 C -0.022 4.022 9 C 0.056 3.944 10 F -0.147 7.147 11 C -0.101 4.101 12 N -0.246 5.246 13 C 0.067 3.933 14 C -0.645 4.645 15 H 0.067 0.933 16 C -0.227 4.227 17 N -0.568 5.568 18 Si 0.937 3.063 19 H -0.204 1.204 20 H -0.198 1.198 21 H -0.196 1.196 22 C -0.075 4.075 23 C 0.033 3.967 24 F -0.142 7.142 25 C 0.315 3.685 26 O -0.383 6.383 27 N -0.205 5.205 28 H 0.112 0.888 29 H 0.132 0.868 30 H 0.114 0.886 31 H 0.205 0.795 32 H 0.159 0.841 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.127 0.873 36 H 0.096 0.904 37 H 0.032 0.968 38 H -0.012 1.012 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.396 -8.716 21.124 22.977 hybrid contribution 0.679 -1.608 0.002 1.745 sum -1.718 -10.324 21.126 23.576 Atomic orbital electron populations 1.20361 0.80434 1.06105 1.05239 1.26652 1.02131 0.83101 0.99138 1.74699 0.89838 1.25452 1.22154 1.85331 1.22345 1.25912 1.65254 1.29969 0.98346 0.82174 0.96064 1.20441 0.87275 1.01266 0.80976 1.47860 1.46568 1.24292 1.13983 1.22722 1.05812 0.89356 0.84275 1.22836 0.93921 0.83980 0.93704 1.92931 1.92862 1.53336 1.75547 1.23442 0.95786 0.89173 1.01715 1.63186 1.09052 1.31804 1.20561 1.19831 0.94567 0.96275 0.82662 1.22212 1.45550 0.98216 0.98523 0.93321 1.27291 0.93433 1.08780 0.93194 1.70939 1.41270 1.06838 1.37706 0.82936 0.77241 0.70016 0.76095 1.20354 1.19791 1.19642 1.22824 0.90023 0.98304 0.96309 1.22690 0.81432 0.95476 0.97053 1.92924 1.39480 1.85493 1.96324 1.20175 0.79176 0.83465 0.85695 1.90776 1.50803 1.22970 1.73719 1.71862 0.99502 1.29427 1.19747 0.88759 0.86844 0.88574 0.79452 0.84109 0.84669 0.84448 0.87317 0.90385 0.96781 1.01163 0.93496 0.92582 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.51 71.24 0.75 -0.19 16 2 C 0.16 3.78 8.22 138.46 1.14 4.92 16 3 N -0.41 -11.92 12.16 -60.33 -0.73 -12.66 16 4 O 0.07 1.88 11.31 74.87 0.85 2.73 16 5 C 0.16 3.20 8.10 88.38 0.72 3.92 16 6 C 0.22 2.69 6.54 85.63 0.56 3.25 16 7 N -0.59 -11.10 2.89 -824.54 -2.39 -13.49 16 8 C 0.10 1.53 6.43 86.96 0.56 2.09 16 9 C 0.08 2.02 1.92 -9.17 -0.02 2.00 16 10 F -0.17 -4.73 17.08 44.97 0.77 -3.97 16 11 C 0.03 0.87 6.21 86.51 0.54 1.41 16 12 N -0.52 -22.50 5.11 -896.63 -4.58 -27.08 16 13 C 0.19 10.05 3.58 85.56 0.31 10.35 16 14 C -0.61 -35.12 8.78 25.60 0.22 -34.90 16 15 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 16 C -0.03 -1.65 5.46 84.65 0.46 -1.19 16 17 N -0.93 -57.01 13.65 21.45 0.29 -56.72 16 18 Si 1.12 51.34 29.90 68.60 2.05 53.39 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 C 0.05 2.25 5.43 86.54 0.47 2.72 16 23 C 0.06 1.84 1.75 -10.24 -0.02 1.82 16 24 F -0.16 -5.33 16.99 44.97 0.76 -4.57 16 25 C 0.53 15.54 7.05 87.84 0.62 16.16 16 26 O -0.51 -18.14 17.25 -3.05 -0.05 -18.20 16 27 N -0.47 -9.81 11.55 -303.22 -3.50 -13.32 16 28 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.19 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.14 1.44 7.92 -2.39 -0.02 1.42 16 33 H 0.14 1.47 7.67 -2.39 -0.02 1.45 16 34 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.11 3.10 7.37 -2.39 -0.02 3.08 16 36 H 0.08 2.55 7.50 -2.38 -0.02 2.54 16 37 H 0.01 0.77 7.89 -2.39 -0.02 0.75 16 38 H -0.03 -1.61 7.74 -2.38 -0.02 -1.63 16 39 H 0.26 15.72 7.22 -92.71 -0.67 15.05 16 40 H 0.06 2.53 7.54 -2.39 -0.02 2.51 16 41 H 0.08 3.76 7.73 -2.39 -0.02 3.74 16 Total: -1.00 -79.63 356.22 0.96 -78.67 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: 1.19 Total: 2.85 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 6.31 Total: 12.35 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -10.91 Total: -123.26 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: 0.79 Total: -15.47 kcal Atomic # 9 Polarization: -10.07 SS G_CDS: 1.53 Total: -8.53 kcal Atomic # 14 Polarization: 51.34 SS G_CDS: 2.05 Total: 53.39 kcal Total: -79.63 0.96 -78.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.415 kcal (2) G-P(sol) polarization free energy of solvation -79.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.94 seconds