Wall clock time and date at job start Wed Apr 1 2020 03:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47540 * 2 1 4 4 N 1.46502 * 109.46977 * 120.00133 * 2 1 3 5 5 C 1.36930 * 120.00040 * 274.99768 * 4 2 1 6 6 H 1.08006 * 120.00109 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99980 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00300 * 0.02562 * 7 5 4 9 9 Si 1.86809 * 119.99846 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47213 * 59.99974 * 9 7 5 11 11 H 1.48500 * 109.46847 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.46981 * 299.99724 * 9 7 5 13 13 C 1.52999 * 109.47039 * 239.99807 * 2 1 3 14 14 H 1.09004 * 110.91815 * 299.87419 * 13 2 1 15 15 C 1.55445 * 111.12044 * 175.87461 * 13 2 1 16 16 C 1.54315 * 102.97095 * 206.46726 * 15 13 2 17 17 N 1.47017 * 107.27354 * 22.19146 * 16 15 13 18 18 C 1.34777 * 125.64937 * 181.07390 * 17 16 15 19 19 O 1.21589 * 119.99836 * 174.66499 * 18 17 16 20 20 C 1.47580 * 120.00344 * 354.67477 * 18 17 16 21 21 C 1.39746 * 120.12642 * 316.08096 * 20 18 17 22 22 C 1.37757 * 119.94077 * 179.97438 * 21 20 18 23 23 C 1.38713 * 120.21527 * 359.97438 * 22 21 20 24 24 F 1.35097 * 119.86663 * 180.02562 * 23 22 21 25 25 C 1.38668 * 120.26485 * 359.97438 * 23 22 21 26 26 F 1.35103 * 119.97347 * 180.02562 * 25 23 22 27 27 C 1.38383 * 120.05495 * 359.78239 * 25 23 22 28 28 F 1.35094 * 120.10924 * 180.23092 * 27 25 23 29 29 C 1.47421 * 108.70177 * 1.06161 * 17 16 15 30 30 H 1.09003 * 109.46483 * 304.59618 * 1 2 3 31 31 H 1.09000 * 109.46634 * 64.59643 * 1 2 3 32 32 H 1.08995 * 109.47128 * 184.59922 * 1 2 3 33 33 H 0.97006 * 120.00169 * 94.99821 * 4 2 1 34 34 H 0.96998 * 120.00023 * 180.02562 * 8 7 5 35 35 H 1.09001 * 110.70607 * 88.09476 * 15 13 2 36 36 H 1.09002 * 110.86008 * 324.91525 * 15 13 2 37 37 H 1.09004 * 109.88188 * 262.77157 * 16 15 13 38 38 H 1.09002 * 109.88157 * 141.61422 * 16 15 13 39 39 H 1.08001 * 120.02892 * 359.97438 * 21 20 18 40 40 H 1.07993 * 119.89184 * 179.97438 * 22 21 20 41 41 H 1.09005 * 110.36708 * 94.70958 * 29 17 16 42 42 H 1.08998 * 110.36719 * 216.91852 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1492 -0.0076 2.3757 6 1 1.8920 1.0403 2.4244 7 6 2.6123 -0.6619 3.5090 8 7 2.9263 -1.9387 3.4496 9 14 2.7901 0.2699 5.1183 10 1 1.4674 0.8056 5.5288 11 1 3.3003 -0.6483 6.1680 12 1 3.7446 1.3930 4.9372 13 6 2.0400 -0.7213 -1.2492 14 1 1.6916 -1.7539 -1.2719 15 6 3.5903 -0.6540 -1.3412 16 6 3.8527 -0.7709 -2.8574 17 7 2.6219 -0.3568 -3.5467 18 6 2.4377 -0.3378 -4.8816 19 8 1.3444 -0.0685 -5.3406 20 6 3.5627 -0.6439 -5.7864 21 6 4.8254 -0.0957 -5.5457 22 6 5.8731 -0.3844 -6.3924 23 6 5.6792 -1.2185 -7.4836 24 9 6.7116 -1.4974 -8.3091 25 6 4.4301 -1.7681 -7.7300 26 9 4.2480 -2.5802 -8.7943 27 6 3.3712 -1.4895 -6.8838 28 9 2.1550 -2.0281 -7.1202 29 6 1.6226 0.0339 -2.5357 30 1 -0.3632 0.5835 0.8460 31 1 -0.3632 0.4409 -0.9283 32 1 -0.3633 -1.0243 0.0824 33 1 2.2490 -1.6319 1.1526 34 1 3.2496 -2.3959 4.2416 35 1 4.0447 -1.4876 -0.8057 36 1 3.9609 0.2967 -0.9578 37 1 4.0918 -1.8031 -3.1137 38 1 4.6758 -0.1158 -3.1428 39 1 4.9798 0.5538 -4.6967 40 1 6.8484 0.0400 -6.2059 41 1 1.6518 1.1109 -2.3698 42 1 0.6252 -0.2738 -2.8496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279016874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:37 Heat of formation + Delta-G solvation = -122.239932 kcal Electronic energy + Delta-G solvation = -29481.094940 eV Core-core repulsion = 24819.306472 eV Total energy + Delta-G solvation = -4661.788468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.21790 -49.63799 -48.88365 -40.64914 -38.88182 -37.75177 -35.33096 -32.67682 -31.54552 -31.22257 -30.41896 -29.28905 -27.52338 -25.36702 -24.11279 -23.79042 -22.89329 -21.56262 -20.25090 -19.72402 -18.79739 -18.49486 -18.19087 -17.28985 -17.19194 -16.88109 -16.46779 -16.11377 -15.90672 -15.56362 -15.32897 -15.14337 -14.95915 -14.77514 -14.34143 -13.89688 -13.87207 -13.48169 -13.28049 -12.99997 -12.82370 -12.55620 -12.45824 -12.40134 -12.31330 -12.13315 -11.80292 -11.28743 -10.92312 -10.77638 -10.65744 -10.47069 -10.29901 -10.28297 -9.93200 -9.68817 -9.51667 -9.49881 -8.96276 -8.79498 -7.02259 -5.81873 -3.10618 -0.12411 0.16032 2.11009 2.46819 2.80347 2.88176 3.39864 3.45188 3.45627 3.57714 3.65998 3.81507 3.87662 4.13826 4.50179 4.64738 4.66594 4.83297 4.93679 5.01909 5.10970 5.17295 5.21938 5.29188 5.39663 5.48171 5.57971 5.79054 5.80373 5.88429 5.94034 5.97111 6.08387 6.13693 6.29509 6.37511 6.50613 6.57615 6.80986 7.04266 7.25279 7.64801 7.81105 8.36527 9.48092 10.04566 10.39430 11.40584 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.020823 B = 0.002305 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.333140 B =12146.920432 C =12912.247129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.186 3.814 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.116 4.116 16 C 0.090 3.910 17 N -0.606 5.606 18 C 0.574 3.426 19 O -0.521 6.521 20 C -0.141 4.141 21 C -0.040 4.040 22 C -0.138 4.138 23 C 0.118 3.882 24 F -0.115 7.115 25 C 0.027 3.973 26 F -0.113 7.113 27 C 0.148 3.852 28 F -0.101 7.101 29 C 0.113 3.887 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.048 0.952 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.162 0.838 40 H 0.163 0.837 41 H 0.074 0.926 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.194 2.693 -21.354 22.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.076 3.924 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.101 0.899 15 C -0.154 4.154 16 C -0.033 4.033 17 N -0.339 5.339 18 C 0.361 3.639 19 O -0.397 6.397 20 C -0.146 4.146 21 C -0.058 4.058 22 C -0.157 4.157 23 C 0.097 3.903 24 F -0.093 7.093 25 C 0.006 3.994 26 F -0.092 7.092 27 C 0.126 3.874 28 F -0.079 7.079 29 C -0.009 4.009 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.179 0.821 40 H 0.180 0.820 41 H 0.092 0.908 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.592 2.885 -21.604 22.771 hybrid contribution 0.145 -0.278 0.503 0.592 sum 6.737 2.607 -21.101 22.303 Atomic orbital electron populations 1.22509 0.99195 1.01334 0.99832 1.20120 0.91830 0.95123 0.85360 0.93217 1.42357 1.78187 1.10647 1.05105 1.19161 1.36566 0.93837 0.87316 0.91285 1.24715 1.02177 0.95942 0.97979 1.69640 1.50841 1.08648 1.29005 0.86303 0.77780 0.78604 0.83694 1.21320 1.21751 1.21308 1.22730 0.95101 1.00423 0.93991 0.89931 1.22636 0.96467 1.04419 0.91840 1.22427 0.86478 1.00021 0.94325 1.48427 1.16587 1.64637 1.04269 1.17328 0.87063 0.78540 0.80988 1.90867 1.24917 1.48478 1.75470 1.19989 0.96279 1.01492 0.96790 1.21302 0.89155 0.96791 0.98599 1.21125 1.01921 0.99139 0.93478 1.17568 0.82832 0.98489 0.91363 1.91593 1.55657 1.91890 1.70146 1.17391 0.93183 0.99320 0.89546 1.91590 1.95619 1.69740 1.52205 1.17248 0.80562 0.95492 0.94049 1.91642 1.39599 1.83157 1.93491 1.22414 0.92299 0.99571 0.86575 0.92832 0.94333 0.93285 0.78270 0.93468 0.89236 0.89964 0.91184 0.91176 0.82078 0.81987 0.90752 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 9.39 37.16 0.35 -2.48 16 2 C 0.19 3.26 2.41 -67.93 -0.16 3.09 16 3 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 4 N -0.72 -16.37 4.89 -53.42 -0.26 -16.63 16 5 C -0.24 -6.15 9.93 -15.06 -0.15 -6.30 16 6 H 0.07 1.75 7.83 -52.48 -0.41 1.33 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -26.82 13.06 55.49 0.72 -26.10 16 9 Si 0.91 21.49 29.55 -169.99 -5.02 16.46 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 C -0.10 -1.45 2.64 -88.31 -0.23 -1.68 16 14 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 15 C -0.12 -1.44 6.21 -24.74 -0.15 -1.59 16 16 C 0.09 0.87 5.89 -3.07 -0.02 0.85 16 17 N -0.61 -7.20 3.33 -171.73 -0.57 -7.77 16 18 C 0.57 7.51 7.22 -12.45 -0.09 7.42 16 19 O -0.52 -8.76 16.67 5.29 0.09 -8.67 16 20 C -0.14 -1.43 5.40 -104.91 -0.57 -2.00 16 21 C -0.04 -0.26 8.43 -39.19 -0.33 -0.59 16 22 C -0.14 -0.76 10.00 -39.58 -0.40 -1.15 16 23 C 0.12 0.93 7.31 -39.25 -0.29 0.64 16 24 F -0.11 -0.96 17.17 2.25 0.04 -0.93 16 25 C 0.03 0.27 7.30 -39.37 -0.29 -0.02 16 26 F -0.11 -1.25 17.09 2.25 0.04 -1.21 16 27 C 0.15 1.64 7.25 -38.92 -0.28 1.36 16 28 F -0.10 -1.36 16.28 2.25 0.04 -1.32 16 29 C 0.11 1.46 5.44 -2.53 -0.01 1.44 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.54 7.14 -51.93 -0.37 0.17 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.38 9.32 7.80 -40.82 -0.32 9.00 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.08 1.06 8.05 -51.93 -0.42 0.64 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.49 5.68 -51.93 -0.30 0.19 16 39 H 0.16 0.73 6.07 -52.49 -0.32 0.42 16 40 H 0.16 0.42 8.06 -52.49 -0.42 0.00 16 41 H 0.07 0.91 8.03 -51.93 -0.42 0.50 16 42 H 0.08 1.11 7.78 -51.93 -0.40 0.71 16 LS Contribution 363.22 15.07 5.47 5.47 Total: -1.00 -31.11 363.22 -7.22 -38.33 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.04 Total: 3.80 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -2.72 Total: -1.45 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.11 Total: -50.49 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.11 Total: -3.46 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.11 -7.22 -38.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279016874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.909 kcal (2) G-P(sol) polarization free energy of solvation -31.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds