Wall clock time and date at job start Wed Apr 1 2020 03:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47540 * 2 1 4 4 N 1.46502 * 109.46977 * 120.00133 * 2 1 3 5 5 C 1.36930 * 120.00040 * 274.99768 * 4 2 1 6 6 H 1.08006 * 120.00109 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99980 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00300 * 0.02562 * 7 5 4 9 9 Si 1.86809 * 119.99846 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47213 * 59.99974 * 9 7 5 11 11 H 1.48500 * 109.46847 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.46981 * 299.99724 * 9 7 5 13 13 C 1.52999 * 109.47039 * 239.99807 * 2 1 3 14 14 H 1.09004 * 110.91815 * 299.87419 * 13 2 1 15 15 C 1.55445 * 111.12044 * 175.87461 * 13 2 1 16 16 C 1.54315 * 102.97095 * 206.46726 * 15 13 2 17 17 N 1.47017 * 107.27354 * 22.19146 * 16 15 13 18 18 C 1.34777 * 125.64937 * 181.07390 * 17 16 15 19 19 O 1.21589 * 119.99836 * 174.66499 * 18 17 16 20 20 C 1.47580 * 120.00344 * 354.67477 * 18 17 16 21 21 C 1.39746 * 120.12642 * 316.08096 * 20 18 17 22 22 C 1.37757 * 119.94077 * 179.97438 * 21 20 18 23 23 C 1.38713 * 120.21527 * 359.97438 * 22 21 20 24 24 F 1.35097 * 119.86663 * 180.02562 * 23 22 21 25 25 C 1.38668 * 120.26485 * 359.97438 * 23 22 21 26 26 F 1.35103 * 119.97347 * 180.02562 * 25 23 22 27 27 C 1.38383 * 120.05495 * 359.78239 * 25 23 22 28 28 F 1.35094 * 120.10924 * 180.23092 * 27 25 23 29 29 C 1.47421 * 108.70177 * 1.06161 * 17 16 15 30 30 H 1.09003 * 109.46483 * 304.59618 * 1 2 3 31 31 H 1.09000 * 109.46634 * 64.59643 * 1 2 3 32 32 H 1.08995 * 109.47128 * 184.59922 * 1 2 3 33 33 H 0.97006 * 120.00169 * 94.99821 * 4 2 1 34 34 H 0.96998 * 120.00023 * 180.02562 * 8 7 5 35 35 H 1.09001 * 110.70607 * 88.09476 * 15 13 2 36 36 H 1.09002 * 110.86008 * 324.91525 * 15 13 2 37 37 H 1.09004 * 109.88188 * 262.77157 * 16 15 13 38 38 H 1.09002 * 109.88157 * 141.61422 * 16 15 13 39 39 H 1.08001 * 120.02892 * 359.97438 * 21 20 18 40 40 H 1.07993 * 119.89184 * 179.97438 * 22 21 20 41 41 H 1.09005 * 110.36708 * 94.70958 * 29 17 16 42 42 H 1.08998 * 110.36719 * 216.91852 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1492 -0.0076 2.3757 6 1 1.8920 1.0403 2.4244 7 6 2.6123 -0.6619 3.5090 8 7 2.9263 -1.9387 3.4496 9 14 2.7901 0.2699 5.1183 10 1 1.4674 0.8056 5.5288 11 1 3.3003 -0.6483 6.1680 12 1 3.7446 1.3930 4.9372 13 6 2.0400 -0.7213 -1.2492 14 1 1.6916 -1.7539 -1.2719 15 6 3.5903 -0.6540 -1.3412 16 6 3.8527 -0.7709 -2.8574 17 7 2.6219 -0.3568 -3.5467 18 6 2.4377 -0.3378 -4.8816 19 8 1.3444 -0.0685 -5.3406 20 6 3.5627 -0.6439 -5.7864 21 6 4.8254 -0.0957 -5.5457 22 6 5.8731 -0.3844 -6.3924 23 6 5.6792 -1.2185 -7.4836 24 9 6.7116 -1.4974 -8.3091 25 6 4.4301 -1.7681 -7.7300 26 9 4.2480 -2.5802 -8.7943 27 6 3.3712 -1.4895 -6.8838 28 9 2.1550 -2.0281 -7.1202 29 6 1.6226 0.0339 -2.5357 30 1 -0.3632 0.5835 0.8460 31 1 -0.3632 0.4409 -0.9283 32 1 -0.3633 -1.0243 0.0824 33 1 2.2490 -1.6319 1.1526 34 1 3.2496 -2.3959 4.2416 35 1 4.0447 -1.4876 -0.8057 36 1 3.9609 0.2967 -0.9578 37 1 4.0918 -1.8031 -3.1137 38 1 4.6758 -0.1158 -3.1428 39 1 4.9798 0.5538 -4.6967 40 1 6.8484 0.0400 -6.2059 41 1 1.6518 1.1109 -2.3698 42 1 0.6252 -0.2738 -2.8496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279016874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:36 Heat of formation + Delta-G solvation = -140.618265 kcal Electronic energy + Delta-G solvation = -29481.891885 eV Core-core repulsion = 24819.306472 eV Total energy + Delta-G solvation = -4662.585412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.97487 -50.39625 -49.66165 -41.57589 -39.71654 -38.83105 -36.80746 -34.29678 -32.62493 -31.86513 -31.43133 -30.76465 -28.78218 -26.49329 -25.58814 -24.45497 -23.97012 -22.78057 -21.17054 -21.01662 -19.52163 -19.29675 -19.13572 -18.87646 -18.06219 -17.76073 -17.46481 -17.00658 -16.69583 -16.54840 -16.40237 -16.12791 -15.82386 -15.71645 -15.58139 -15.32445 -14.89120 -14.70826 -14.49688 -14.04610 -13.91703 -13.86980 -13.48837 -13.27604 -13.17460 -13.07788 -13.00582 -12.82373 -12.72799 -12.28578 -12.20007 -11.93819 -11.59714 -11.51820 -11.37725 -11.27875 -10.87082 -10.20614 -10.18586 -9.74553 -8.94038 -7.87525 -5.14206 -0.80026 -0.48259 1.27411 1.52044 1.53396 1.59074 1.62356 2.05677 2.15309 2.61244 2.91058 2.94157 3.04823 3.30541 3.43822 3.47524 3.63762 3.67310 3.88151 4.11848 4.25293 4.29441 4.32191 4.39827 4.51302 4.58611 4.60651 4.65226 4.72066 4.75517 4.83021 4.91191 5.01471 5.06618 5.13848 5.25380 5.34058 5.37028 5.41916 5.59008 5.63897 6.30024 6.34999 6.83509 7.41908 8.18299 8.41244 9.35577 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.020823 B = 0.002305 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.333140 B =12146.920432 C =12912.247129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.184 3.816 3 H 0.054 0.946 4 N -0.730 5.730 5 C -0.230 4.230 6 H 0.074 0.926 7 C -0.073 4.073 8 N -0.969 5.969 9 Si 0.964 3.036 10 H -0.284 1.284 11 H -0.300 1.300 12 H -0.276 1.276 13 C -0.096 4.096 14 H 0.071 0.929 15 C -0.112 4.112 16 C 0.094 3.906 17 N -0.603 5.603 18 C 0.573 3.427 19 O -0.568 6.568 20 C -0.150 4.150 21 C -0.022 4.022 22 C -0.108 4.108 23 C 0.122 3.878 24 F -0.116 7.116 25 C 0.013 3.987 26 F -0.127 7.127 27 C 0.123 3.877 28 F -0.126 7.126 29 C 0.119 3.881 30 H 0.036 0.964 31 H 0.067 0.933 32 H 0.037 0.963 33 H 0.373 0.627 34 H 0.248 0.752 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.192 0.808 40 H 0.206 0.794 41 H 0.086 0.914 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.500 4.575 -21.873 24.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.075 3.925 3 H 0.072 0.928 4 N -0.370 5.370 5 C -0.362 4.362 6 H 0.092 0.908 7 C -0.266 4.266 8 N -0.620 5.620 9 Si 0.794 3.206 10 H -0.211 1.211 11 H -0.227 1.227 12 H -0.203 1.203 13 C -0.116 4.116 14 H 0.089 0.911 15 C -0.150 4.150 16 C -0.027 4.027 17 N -0.335 5.335 18 C 0.362 3.638 19 O -0.448 6.448 20 C -0.155 4.155 21 C -0.040 4.040 22 C -0.126 4.126 23 C 0.102 3.898 24 F -0.095 7.095 25 C -0.008 4.008 26 F -0.106 7.106 27 C 0.102 3.898 28 F -0.104 7.104 29 C -0.004 4.004 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.205 0.795 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.129 0.871 39 H 0.209 0.791 40 H 0.223 0.777 41 H 0.104 0.896 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.905 4.798 -22.144 24.345 hybrid contribution -0.573 -0.825 0.607 1.173 sum 8.332 3.974 -21.537 23.432 Atomic orbital electron populations 1.22401 0.98564 1.00586 1.00639 1.20294 0.92070 0.95171 0.84959 0.92812 1.42517 1.78281 1.10268 1.05954 1.19520 1.34271 0.94085 0.88290 0.90764 1.25410 1.03412 0.96748 1.00991 1.69787 1.52881 1.10067 1.29232 0.85354 0.77731 0.77449 0.80085 1.21079 1.22707 1.20252 1.22507 0.96695 0.99424 0.93018 0.91081 1.22563 0.94634 1.03840 0.93960 1.22555 0.86483 1.01810 0.91853 1.48429 1.17031 1.64063 1.03950 1.17717 0.87219 0.77615 0.81287 1.90840 1.27026 1.50717 1.76258 1.19856 0.96823 1.02579 0.96207 1.21630 0.87451 0.95714 0.99242 1.21551 1.03221 0.96709 0.91102 1.17753 0.81809 0.98408 0.91862 1.91598 1.55488 1.91942 1.70427 1.17570 0.93933 0.99932 0.89343 1.91547 1.95801 1.70333 1.52889 1.17503 0.80122 0.96886 0.95292 1.91570 1.41190 1.83823 1.93830 1.22263 0.92168 0.99897 0.86034 0.94430 0.91460 0.94415 0.79519 0.94277 0.90559 0.89979 0.90107 0.87083 0.79065 0.77681 0.89620 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.35 9.39 71.98 0.68 -4.68 16 2 C 0.18 6.28 2.41 44.99 0.11 6.39 16 3 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 4 N -0.73 -33.09 4.89 -322.93 -1.58 -34.67 16 5 C -0.23 -11.79 9.93 84.03 0.83 -10.96 16 6 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 7 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 8 N -0.97 -56.46 13.06 21.65 0.28 -56.18 16 9 Si 0.96 44.15 29.55 68.60 2.03 46.18 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 12 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 13 C -0.10 -2.63 2.64 -9.30 -0.02 -2.65 16 14 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 15 C -0.11 -2.56 6.21 31.88 0.20 -2.36 16 16 C 0.09 1.50 5.89 86.73 0.51 2.01 16 17 N -0.60 -13.03 3.33 -815.51 -2.71 -15.75 16 18 C 0.57 14.30 7.22 86.71 0.63 14.93 16 19 O -0.57 -19.30 16.67 -4.00 -0.07 -19.37 16 20 C -0.15 -2.76 5.40 -20.05 -0.11 -2.87 16 21 C -0.02 -0.19 8.43 22.52 0.19 0.00 16 22 C -0.11 -0.63 10.00 22.27 0.22 -0.41 16 23 C 0.12 1.56 7.31 22.49 0.16 1.73 16 24 F -0.12 -1.64 17.17 44.97 0.77 -0.87 16 25 C 0.01 0.25 7.30 22.41 0.16 0.42 16 26 F -0.13 -2.86 17.09 44.97 0.77 -2.09 16 27 C 0.12 2.70 7.25 22.70 0.16 2.87 16 28 F -0.13 -3.58 16.28 44.97 0.73 -2.84 16 29 C 0.12 2.88 5.44 86.86 0.47 3.35 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.82 7.14 -2.39 -0.02 1.80 16 32 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.37 18.39 7.80 -92.70 -0.72 17.67 16 34 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.08 1.90 8.05 -2.39 -0.02 1.88 16 37 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.11 0.90 5.68 -2.39 -0.01 0.89 16 39 H 0.19 0.50 6.07 -2.91 -0.02 0.48 16 40 H 0.21 -0.43 8.06 -2.91 -0.02 -0.45 16 41 H 0.09 1.91 8.03 -2.38 -0.02 1.89 16 42 H 0.07 1.85 7.78 -2.39 -0.02 1.84 16 Total: -1.00 -70.64 363.22 5.25 -65.39 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.36 Total: 15.95 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 4.66 Total: 4.23 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -4.01 Total: -106.60 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.07 Total: -19.37 kcal Atomic # 9 Polarization: -8.07 SS G_CDS: 2.27 Total: -5.80 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -70.64 5.25 -65.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279016874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.224 kcal (2) G-P(sol) polarization free energy of solvation -70.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds