Wall clock time and date at job start Wed Apr 1 2020 03:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47425 * 2 1 4 4 N 1.46499 * 109.47263 * 120.00197 * 2 1 3 5 5 C 1.36941 * 119.99730 * 275.00155 * 4 2 1 6 6 H 1.07999 * 120.00188 * 359.97438 * 5 4 2 7 7 C 1.38807 * 120.00071 * 179.97438 * 5 4 2 8 8 N 1.31624 * 120.00159 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00317 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47061 * 60.00097 * 9 7 5 11 11 H 1.48495 * 109.47190 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47144 * 300.00434 * 9 7 5 13 13 C 1.53007 * 109.47308 * 239.99968 * 2 1 3 14 14 H 1.08995 * 110.88810 * 296.11973 * 13 2 1 15 15 C 1.55155 * 111.00262 * 60.00167 * 13 2 1 16 16 C 1.54328 * 102.93945 * 153.57485 * 15 13 2 17 17 N 1.47014 * 107.27213 * 337.80489 * 16 15 13 18 18 C 1.34777 * 125.64629 * 178.98445 * 17 16 15 19 19 O 1.21589 * 120.00000 * 175.14557 * 18 17 16 20 20 C 1.47573 * 120.00223 * 355.14106 * 18 17 16 21 21 C 1.39743 * 120.13314 * 46.90515 * 20 18 17 22 22 C 1.37752 * 119.94395 * 179.71880 * 21 20 18 23 23 C 1.38710 * 120.21505 * 0.55622 * 22 21 20 24 24 F 1.35102 * 119.86450 * 179.69397 * 23 22 21 25 25 C 1.38658 * 120.26886 * 359.72667 * 23 22 21 26 26 F 1.35102 * 119.97785 * 180.02562 * 25 23 22 27 27 C 1.38387 * 120.05015 * 359.97438 * 25 23 22 28 28 F 1.35097 * 120.10529 * 180.02562 * 27 25 23 29 29 C 1.47423 * 108.70729 * 358.94519 * 17 16 15 30 30 H 1.09000 * 109.46771 * 60.00328 * 1 2 3 31 31 H 1.08998 * 109.47462 * 300.00064 * 1 2 3 32 32 H 1.09004 * 109.47023 * 179.97438 * 1 2 3 33 33 H 0.96994 * 120.00283 * 94.99724 * 4 2 1 34 34 H 0.97002 * 120.00406 * 179.97438 * 8 7 5 35 35 H 1.09003 * 110.71928 * 271.94107 * 15 13 2 36 36 H 1.09004 * 110.72249 * 35.21334 * 15 13 2 37 37 H 1.09003 * 109.87661 * 97.22594 * 16 15 13 38 38 H 1.08997 * 109.88094 * 218.23126 * 16 15 13 39 39 H 1.07999 * 120.02093 * 0.02562 * 21 20 18 40 40 H 1.08000 * 119.88964 * 180.28045 * 22 21 20 41 41 H 1.09000 * 110.36315 * 265.28876 * 29 17 16 42 42 H 1.08992 * 110.37047 * 142.96664 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0075 2.3757 6 1 1.8926 1.0405 2.4242 7 6 2.6113 -0.6619 3.5092 8 7 2.9234 -1.9393 3.4504 9 14 2.7903 0.2701 5.1182 10 1 1.4683 0.8079 5.5285 11 1 3.2980 -0.6486 6.1686 12 1 3.7463 1.3918 4.9367 13 6 2.0400 -0.7213 -1.2493 14 1 1.7469 -1.7710 -1.2388 15 6 1.5426 -0.0178 -2.5396 16 6 2.6251 -0.3892 -3.5750 17 7 3.8428 -0.7365 -2.8279 18 6 5.0100 -1.1361 -3.3704 19 8 5.9812 -1.3134 -2.6607 20 6 5.1093 -1.3587 -4.8259 21 6 4.5991 -0.4108 -5.7170 22 6 4.6991 -0.6198 -7.0749 23 6 5.2947 -1.7741 -7.5615 24 9 5.3834 -1.9747 -8.8946 25 6 5.7987 -2.7233 -6.6853 26 9 6.3781 -3.8452 -7.1657 27 6 5.7096 -2.5217 -5.3191 28 9 6.2008 -3.4456 -4.4645 29 6 3.5760 -0.5742 -1.3871 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6317 1.1526 34 1 3.2468 -2.3965 4.2424 35 1 0.5704 -0.4077 -2.8412 36 1 1.4990 1.0621 -2.3978 37 1 2.2956 -1.2444 -4.1651 38 1 2.8188 0.4603 -4.2298 39 1 4.1312 0.4871 -5.3412 40 1 4.3085 0.1155 -7.7627 41 1 3.8942 0.4127 -1.0512 42 1 4.0842 -1.3519 -0.8172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279016877.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:47 Heat of formation + Delta-G solvation = -142.802910 kcal Electronic energy + Delta-G solvation = -29604.999281 eV Core-core repulsion = 24942.319135 eV Total energy + Delta-G solvation = -4662.680146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.98172 -50.40133 -49.66731 -41.57852 -39.72109 -38.85624 -36.81934 -34.35396 -32.63745 -31.87138 -31.60968 -30.01281 -29.49199 -26.11812 -25.78322 -24.45417 -23.94039 -22.87938 -21.09838 -21.04277 -19.52064 -19.34358 -19.16324 -18.79939 -18.08322 -17.76821 -17.39235 -17.03385 -16.72679 -16.59869 -16.45098 -16.13441 -15.77594 -15.71159 -15.58116 -15.39665 -15.11289 -14.68187 -14.42592 -14.14384 -13.93973 -13.68104 -13.44844 -13.25090 -13.12984 -13.08950 -13.00947 -12.79447 -12.58355 -12.37568 -12.24347 -11.97915 -11.66263 -11.51723 -11.38348 -11.25480 -10.90714 -10.20161 -10.19086 -9.75076 -8.97120 -7.91302 -5.18630 -0.78630 -0.48519 1.25498 1.46700 1.49514 1.55216 1.63455 2.04098 2.15797 2.57771 2.91298 2.95125 3.05897 3.30626 3.41862 3.47285 3.62577 3.72064 3.88714 4.12666 4.21192 4.29601 4.31519 4.46057 4.56202 4.59703 4.60749 4.68224 4.75871 4.79431 4.89134 4.92105 5.01577 5.10933 5.14990 5.25895 5.33936 5.36913 5.45754 5.55794 5.69470 6.30962 6.33800 6.84956 7.36696 8.15830 8.35428 9.32283 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.019986 B = 0.002467 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.623179 B =11348.393857 C =12220.659697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.178 3.822 3 H 0.050 0.950 4 N -0.740 5.740 5 C -0.229 4.229 6 H 0.078 0.922 7 C -0.081 4.081 8 N -0.973 5.973 9 Si 0.967 3.033 10 H -0.276 1.276 11 H -0.302 1.302 12 H -0.280 1.280 13 C -0.095 4.095 14 H 0.071 0.929 15 C -0.112 4.112 16 C 0.085 3.915 17 N -0.603 5.603 18 C 0.565 3.435 19 O -0.579 6.579 20 C -0.147 4.147 21 C -0.021 4.021 22 C -0.102 4.102 23 C 0.123 3.877 24 F -0.115 7.115 25 C 0.014 3.986 26 F -0.128 7.128 27 C 0.116 3.884 28 F -0.131 7.131 29 C 0.123 3.877 30 H 0.086 0.914 31 H 0.031 0.969 32 H 0.038 0.962 33 H 0.369 0.631 34 H 0.247 0.753 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.197 0.803 40 H 0.212 0.788 41 H 0.065 0.935 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.478 7.232 -29.659 30.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.070 3.930 3 H 0.068 0.932 4 N -0.380 5.380 5 C -0.362 4.362 6 H 0.096 0.904 7 C -0.273 4.273 8 N -0.625 5.625 9 Si 0.797 3.203 10 H -0.202 1.202 11 H -0.228 1.228 12 H -0.206 1.206 13 C -0.115 4.115 14 H 0.089 0.911 15 C -0.149 4.149 16 C -0.035 4.035 17 N -0.335 5.335 18 C 0.353 3.647 19 O -0.459 6.459 20 C -0.151 4.151 21 C -0.039 4.039 22 C -0.120 4.120 23 C 0.102 3.898 24 F -0.094 7.094 25 C -0.007 4.007 26 F -0.107 7.107 27 C 0.095 3.905 28 F -0.109 7.109 29 C 0.000 4.000 30 H 0.104 0.896 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.200 0.800 34 H 0.056 0.944 35 H 0.131 0.869 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.134 0.866 39 H 0.214 0.786 40 H 0.229 0.771 41 H 0.083 0.917 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.875 7.184 -29.239 30.245 hybrid contribution 1.148 -1.371 1.701 2.468 sum -1.727 5.814 -27.538 28.198 Atomic orbital electron populations 1.22281 0.96870 1.00851 1.01260 1.20446 0.93236 0.94861 0.84439 0.93185 1.42696 1.78494 1.10228 1.06536 1.19571 1.34201 0.94133 0.88250 0.90380 1.25521 1.03476 0.96803 1.01482 1.69818 1.53045 1.10326 1.29262 0.85294 0.77991 0.77265 0.79757 1.20156 1.22826 1.20603 1.22507 0.92030 1.00607 0.96352 0.91094 1.22761 0.98940 1.02271 0.90975 1.22735 0.82631 1.02705 0.95442 1.48518 1.11826 1.64692 1.08483 1.17949 0.82105 0.77226 0.87408 1.90867 1.37976 1.53461 1.63594 1.19821 1.05314 0.96224 0.93786 1.21667 0.93275 0.97922 0.91018 1.21581 0.98391 0.95573 0.96470 1.17748 0.99998 0.94859 0.77183 1.91601 1.93850 1.94994 1.28905 1.17581 1.05685 0.87365 0.90077 1.91544 1.82286 1.48837 1.87995 1.17602 0.98790 0.88531 0.85582 1.91569 1.85198 1.64388 1.69782 1.22087 0.97146 1.00573 0.80146 0.89571 0.94944 0.94237 0.80030 0.94387 0.86940 0.88325 0.89208 0.86604 0.78582 0.77101 0.91703 0.94727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.51 9.27 71.98 0.67 -3.84 16 2 C 0.18 6.11 2.43 44.99 0.11 6.22 16 3 H 0.05 1.72 8.01 -2.39 -0.02 1.70 16 4 N -0.74 -35.84 4.97 -322.94 -1.61 -37.45 16 5 C -0.23 -12.47 9.93 84.03 0.83 -11.64 16 6 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 7 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 8 N -0.97 -60.98 13.06 21.65 0.28 -60.70 16 9 Si 0.97 46.72 29.55 68.60 2.03 48.75 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 C -0.09 -2.58 2.65 -9.40 -0.02 -2.61 16 14 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 15 C -0.11 -1.57 5.29 31.78 0.17 -1.41 16 16 C 0.09 1.05 5.62 86.73 0.49 1.54 16 17 N -0.60 -15.03 3.33 -815.51 -2.71 -17.74 16 18 C 0.56 16.67 7.19 86.71 0.62 17.29 16 19 O -0.58 -24.08 16.86 -4.00 -0.07 -24.14 16 20 C -0.15 -2.98 5.43 -20.06 -0.11 -3.09 16 21 C -0.02 -0.17 8.51 22.52 0.19 0.03 16 22 C -0.10 -0.48 10.00 22.27 0.22 -0.26 16 23 C 0.12 1.54 7.31 22.48 0.16 1.70 16 24 F -0.12 -1.55 17.17 44.97 0.77 -0.78 16 25 C 0.01 0.28 7.30 22.41 0.16 0.44 16 26 F -0.13 -3.05 17.09 44.97 0.77 -2.28 16 27 C 0.12 2.82 7.26 22.70 0.16 2.99 16 28 F -0.13 -4.25 16.37 44.97 0.74 -3.52 16 29 C 0.12 4.01 6.21 86.86 0.54 4.55 16 30 H 0.09 1.72 7.28 -2.39 -0.02 1.71 16 31 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.37 19.86 7.80 -92.71 -0.72 19.13 16 34 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.11 1.07 8.11 -2.39 -0.02 1.05 16 36 H 0.10 1.13 8.04 -2.38 -0.02 1.11 16 37 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.12 0.43 5.95 -2.39 -0.01 0.42 16 39 H 0.20 0.15 5.88 -2.91 -0.02 0.14 16 40 H 0.21 -0.92 8.06 -2.91 -0.02 -0.95 16 41 H 0.06 2.21 7.98 -2.39 -0.02 2.19 16 42 H 0.03 1.46 8.09 -2.39 -0.02 1.44 16 Total: -1.00 -82.34 363.53 5.23 -77.11 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.36 Total: 13.06 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 4.67 Total: 7.69 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -4.04 Total: -115.89 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.07 Total: -24.14 kcal Atomic # 9 Polarization: -8.85 SS G_CDS: 2.28 Total: -6.58 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -82.34 5.23 -77.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279016877.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.694 kcal (2) G-P(sol) polarization free energy of solvation -82.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds