Wall clock time and date at job start Wed Apr 1 2020 02:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 C 1.52997 * 109.47236 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.47004 * 180.02562 * 6 5 4 8 8 C 1.36938 * 119.99817 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00298 * 359.97438 * 8 7 6 10 10 C 1.38817 * 119.99790 * 179.97438 * 8 7 6 11 11 N 1.31614 * 119.99859 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 120.00034 * 0.02562 * 10 8 7 13 13 H 1.48507 * 109.47100 * 89.99635 * 12 10 8 14 14 H 1.48494 * 109.47145 * 209.99093 * 12 10 8 15 15 H 1.48502 * 109.47220 * 329.99560 * 12 10 8 16 16 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 17 17 C 1.34769 * 119.99686 * 84.99974 * 16 2 1 18 18 O 1.21275 * 120.00678 * 0.02562 * 17 16 2 19 19 C 1.50701 * 119.99690 * 179.97438 * 17 16 2 20 20 C 1.50704 * 109.47153 * 179.97438 * 19 17 16 21 21 C 1.38247 * 119.98163 * 264.72712 * 20 19 17 22 22 C 1.38188 * 120.03403 * 179.72426 * 21 20 19 23 23 C 1.38490 * 119.99853 * 0.55427 * 22 21 20 24 24 F 1.35104 * 120.01588 * 179.74651 * 23 22 21 25 25 C 1.38408 * 119.96637 * 359.72084 * 23 22 21 26 26 C 1.38339 * 119.96039 * 0.02562 * 25 23 22 27 27 Cl 1.73604 * 120.00162 * 179.97438 * 26 25 23 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 32 32 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 33 33 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 34 34 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 35 35 H 1.08993 * 109.47322 * 300.00158 * 6 5 4 36 36 H 1.09004 * 109.46881 * 60.00519 * 6 5 4 37 37 H 0.97000 * 119.99888 * 359.97438 * 7 6 5 38 38 H 0.97002 * 120.00377 * 180.02562 * 11 10 8 39 39 H 0.97000 * 119.99634 * 265.00306 * 16 2 1 40 40 H 1.08996 * 109.47353 * 300.00507 * 19 17 16 41 41 H 1.09006 * 109.47337 * 60.00072 * 19 17 16 42 42 H 1.07998 * 119.98282 * 0.02562 * 21 20 19 43 43 H 1.07992 * 119.99689 * 180.27379 * 22 21 20 44 44 H 1.08002 * 120.02052 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0748 -1.3351 2.5627 7 7 5.5348 -1.2312 2.6248 8 6 6.2186 -1.8062 3.6626 9 1 5.6816 -2.3359 4.4355 10 6 7.6020 -1.7082 3.7211 11 7 8.2592 -2.2605 4.7188 12 14 8.5308 -0.7914 2.3846 13 1 8.6618 0.6383 2.7645 14 1 9.8818 -1.3864 2.2235 15 1 7.7873 -0.8971 1.1035 16 7 2.0184 -0.6906 -1.1962 17 6 2.1472 -0.0183 -2.3570 18 8 1.8592 1.1585 -2.4115 19 6 2.6501 -0.7285 -3.5873 20 6 2.7001 0.2396 -4.7412 21 6 1.6410 0.3145 -5.6266 22 6 1.6833 1.2059 -6.6817 23 6 2.7919 2.0167 -6.8592 24 9 2.8358 2.8847 -7.8936 25 6 3.8547 1.9377 -5.9761 26 6 3.8085 1.0485 -4.9173 27 17 5.1413 0.9480 -3.8093 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6053 -0.2617 2.1370 32 1 1.7516 -1.7715 1.2056 33 1 3.9994 -1.0728 0.4261 34 1 3.8531 0.4370 1.3574 35 1 3.6402 -0.8760 3.4506 36 1 3.7864 -2.3853 2.5186 37 1 6.0171 -0.7557 1.9304 38 1 9.2259 -2.1917 4.7600 39 1 2.2491 -1.6318 -1.1525 40 1 3.6494 -1.1204 -3.3977 41 1 1.9779 -1.5509 -3.8325 42 1 0.7781 -0.3205 -5.4908 43 1 0.8537 1.2670 -7.3704 44 1 4.7195 2.5698 -6.1134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283232729.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:00 Heat of formation + Delta-G solvation = -68.126220 kcal Electronic energy + Delta-G solvation = -26620.438218 eV Core-core repulsion = 22512.792977 eV Total energy + Delta-G solvation = -4107.645241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.33519 -40.46380 -39.24218 -36.88367 -36.78733 -35.02812 -33.25107 -32.51556 -31.41849 -31.22762 -29.82014 -27.65160 -25.91303 -23.61823 -23.10219 -22.39551 -21.07039 -20.94599 -20.57550 -18.26477 -17.51851 -17.37615 -17.21979 -16.66767 -16.03858 -15.84092 -15.30049 -15.05613 -14.69149 -14.52557 -14.27598 -14.20428 -14.04699 -13.89522 -13.63544 -13.22827 -13.06652 -12.71934 -12.54598 -12.31738 -12.23482 -12.17722 -11.73154 -11.72930 -11.66821 -11.31099 -11.24124 -10.97719 -10.92139 -10.54330 -10.41917 -10.12236 -10.05292 -9.59505 -9.41200 -9.20282 -8.99412 -8.89327 -7.23026 -5.77208 -3.12424 0.52852 0.63033 1.70285 2.47656 2.80739 3.19832 3.36996 3.40548 3.45011 3.77345 4.09509 4.22645 4.42310 4.53017 4.59016 4.62338 4.72057 4.91282 4.93922 5.02571 5.06306 5.14964 5.32952 5.40827 5.43975 5.45184 5.52712 5.53135 5.61330 5.67559 5.80634 5.83800 5.90819 5.99327 6.07702 6.10762 6.25449 6.27749 6.39542 6.74014 6.77558 7.33653 7.99413 8.06705 8.42167 9.21493 9.94164 10.14148 11.41312 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.012346 B = 0.002643 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.328038 B =10592.891733 C =12490.139701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.088 0.912 4 C -0.123 4.123 5 C -0.129 4.129 6 C 0.157 3.843 7 N -0.758 5.758 8 C -0.244 4.244 9 H 0.090 0.910 10 C 0.003 3.997 11 N -0.935 5.935 12 Si 0.885 3.115 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.278 1.278 16 N -0.722 5.722 17 C 0.519 3.481 18 O -0.531 6.531 19 C -0.111 4.111 20 C -0.064 4.064 21 C -0.067 4.067 22 C -0.148 4.148 23 C 0.111 3.889 24 F -0.134 7.134 25 C -0.146 4.146 26 C 0.006 3.994 27 Cl -0.045 7.045 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.026 0.974 36 H 0.025 0.975 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.401 0.599 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.789 4.058 -24.687 30.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.106 0.894 4 C -0.161 4.161 5 C -0.167 4.167 6 C 0.030 3.970 7 N -0.403 5.403 8 C -0.374 4.374 9 H 0.108 0.892 10 C -0.193 4.193 11 N -0.583 5.583 12 Si 0.715 3.285 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.204 1.204 16 N -0.374 5.374 17 C 0.304 3.696 18 O -0.407 6.407 19 C -0.151 4.151 20 C -0.066 4.066 21 C -0.085 4.085 22 C -0.167 4.167 23 C 0.091 3.909 24 F -0.112 7.112 25 C -0.165 4.165 26 C -0.021 4.021 27 Cl -0.016 7.016 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.236 0.764 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.160 0.840 43 H 0.160 0.840 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.826 4.816 -24.427 30.621 hybrid contribution 1.118 0.330 -0.913 1.480 sum -16.708 5.146 -25.340 30.785 Atomic orbital electron populations 1.22162 0.95380 1.01997 1.02428 1.21045 0.93650 0.97775 0.83820 0.89371 1.21840 0.96528 1.00973 0.96756 1.21784 0.94162 1.01346 0.99454 1.20627 0.84862 0.97055 0.94477 1.42736 1.01749 1.67128 1.28727 1.19074 0.89915 1.27510 1.00896 0.89243 1.24680 0.96196 1.00560 0.97818 1.69700 1.07320 1.49354 1.31908 0.86543 0.79636 0.80034 0.82283 1.21056 1.21682 1.20422 1.46085 1.67477 1.14187 1.09615 1.20270 0.77706 0.87381 0.84237 1.90728 1.49467 1.15626 1.84896 1.20759 1.05188 0.97905 0.91248 1.19195 0.93217 0.97548 0.96633 1.20811 0.97322 0.97584 0.92762 1.21190 0.98062 0.97141 1.00333 1.17449 0.95474 0.91262 0.86702 1.91530 1.96660 1.67320 1.55737 1.20949 0.99917 1.00853 0.94818 1.20507 0.90896 0.97834 0.92903 1.98427 1.44719 1.97163 1.61252 0.92376 0.92492 0.91535 0.90108 0.91213 0.92117 0.92025 0.95637 0.95742 0.80740 0.93064 0.76434 0.87060 0.87230 0.84048 0.84004 0.83566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.48 37.16 0.35 -1.06 16 2 C 0.14 1.43 2.57 -67.93 -0.17 1.26 16 3 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 4 C -0.12 -1.29 4.75 -26.73 -0.13 -1.42 16 5 C -0.13 -1.85 5.22 -26.73 -0.14 -1.99 16 6 C 0.16 2.95 6.26 -4.04 -0.03 2.93 16 7 N -0.76 -18.26 5.41 -59.91 -0.32 -18.58 16 8 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 9 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 10 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 11 N -0.93 -29.65 13.97 55.49 0.78 -28.87 16 12 Si 0.88 22.47 27.74 -169.99 -4.71 17.76 16 13 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 15 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 16 N -0.72 -6.61 4.53 -53.80 -0.24 -6.86 16 17 C 0.52 5.46 7.79 -10.99 -0.09 5.37 16 18 O -0.53 -7.61 15.70 5.56 0.09 -7.52 16 19 C -0.11 -0.85 5.34 -29.03 -0.16 -1.01 16 20 C -0.06 -0.58 4.38 -104.58 -0.46 -1.04 16 21 C -0.07 -0.49 9.68 -39.60 -0.38 -0.87 16 22 C -0.15 -1.11 10.03 -39.51 -0.40 -1.51 16 23 C 0.11 1.01 7.30 -39.43 -0.29 0.72 16 24 F -0.13 -1.28 17.27 2.25 0.04 -1.24 16 25 C -0.15 -1.39 9.81 -39.48 -0.39 -1.78 16 26 C 0.01 0.06 6.31 -39.51 -0.25 -0.19 16 27 Cl -0.04 -0.51 27.40 -51.86 -1.42 -1.93 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.86 7.75 -51.93 -0.40 0.45 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.36 8.52 5.53 -40.82 -0.23 8.30 16 38 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 39 H 0.40 2.82 8.60 -40.82 -0.35 2.47 16 40 H 0.11 0.82 7.12 -51.93 -0.37 0.45 16 41 H 0.11 0.48 8.05 -51.93 -0.42 0.07 16 42 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 43 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 387.94 15.07 5.85 5.85 Total: -1.00 -35.03 387.94 -9.13 -44.15 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.40 Total: 5.01 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -2.77 Total: -7.76 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.21 Total: -54.31 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.09 Total: -7.52 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.76 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.42 Total: -1.93 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.03 -9.13 -44.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283232729.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.973 kcal (2) G-P(sol) polarization free energy of solvation -35.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds