Wall clock time and date at job start Wed Apr 1 2020 02:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 C 1.52997 * 109.47236 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.47004 * 180.02562 * 6 5 4 8 8 C 1.36938 * 119.99817 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00298 * 359.97438 * 8 7 6 10 10 C 1.38817 * 119.99790 * 179.97438 * 8 7 6 11 11 N 1.31614 * 119.99859 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 120.00034 * 0.02562 * 10 8 7 13 13 H 1.48507 * 109.47100 * 89.99635 * 12 10 8 14 14 H 1.48494 * 109.47145 * 209.99093 * 12 10 8 15 15 H 1.48502 * 109.47220 * 329.99560 * 12 10 8 16 16 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 17 17 C 1.34769 * 119.99686 * 84.99974 * 16 2 1 18 18 O 1.21275 * 120.00678 * 0.02562 * 17 16 2 19 19 C 1.50701 * 119.99690 * 179.97438 * 17 16 2 20 20 C 1.50704 * 109.47153 * 179.97438 * 19 17 16 21 21 C 1.38247 * 119.98163 * 264.72712 * 20 19 17 22 22 C 1.38188 * 120.03403 * 179.72426 * 21 20 19 23 23 C 1.38490 * 119.99853 * 0.55427 * 22 21 20 24 24 F 1.35104 * 120.01588 * 179.74651 * 23 22 21 25 25 C 1.38408 * 119.96637 * 359.72084 * 23 22 21 26 26 C 1.38339 * 119.96039 * 0.02562 * 25 23 22 27 27 Cl 1.73604 * 120.00162 * 179.97438 * 26 25 23 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 32 32 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 33 33 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 34 34 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 35 35 H 1.08993 * 109.47322 * 300.00158 * 6 5 4 36 36 H 1.09004 * 109.46881 * 60.00519 * 6 5 4 37 37 H 0.97000 * 119.99888 * 359.97438 * 7 6 5 38 38 H 0.97002 * 120.00377 * 180.02562 * 11 10 8 39 39 H 0.97000 * 119.99634 * 265.00306 * 16 2 1 40 40 H 1.08996 * 109.47353 * 300.00507 * 19 17 16 41 41 H 1.09006 * 109.47337 * 60.00072 * 19 17 16 42 42 H 1.07998 * 119.98282 * 0.02562 * 21 20 19 43 43 H 1.07992 * 119.99689 * 180.27379 * 22 21 20 44 44 H 1.08002 * 120.02052 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0748 -1.3351 2.5627 7 7 5.5348 -1.2312 2.6248 8 6 6.2186 -1.8062 3.6626 9 1 5.6816 -2.3359 4.4355 10 6 7.6020 -1.7082 3.7211 11 7 8.2592 -2.2605 4.7188 12 14 8.5308 -0.7914 2.3846 13 1 8.6618 0.6383 2.7645 14 1 9.8818 -1.3864 2.2235 15 1 7.7873 -0.8971 1.1035 16 7 2.0184 -0.6906 -1.1962 17 6 2.1472 -0.0183 -2.3570 18 8 1.8592 1.1585 -2.4115 19 6 2.6501 -0.7285 -3.5873 20 6 2.7001 0.2396 -4.7412 21 6 1.6410 0.3145 -5.6266 22 6 1.6833 1.2059 -6.6817 23 6 2.7919 2.0167 -6.8592 24 9 2.8358 2.8847 -7.8936 25 6 3.8547 1.9377 -5.9761 26 6 3.8085 1.0485 -4.9173 27 17 5.1413 0.9480 -3.8093 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6053 -0.2617 2.1370 32 1 1.7516 -1.7715 1.2056 33 1 3.9994 -1.0728 0.4261 34 1 3.8531 0.4370 1.3574 35 1 3.6402 -0.8760 3.4506 36 1 3.7864 -2.3853 2.5186 37 1 6.0171 -0.7557 1.9304 38 1 9.2259 -2.1917 4.7600 39 1 2.2491 -1.6318 -1.1525 40 1 3.6494 -1.1204 -3.3977 41 1 1.9779 -1.5509 -3.8325 42 1 0.7781 -0.3205 -5.4908 43 1 0.8537 1.2670 -7.3704 44 1 4.7195 2.5698 -6.1134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283232729.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:59 Heat of formation + Delta-G solvation = -90.041070 kcal Electronic energy + Delta-G solvation = -26621.388517 eV Core-core repulsion = 22512.792977 eV Total energy + Delta-G solvation = -4108.595540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.02760 -41.19564 -39.94967 -37.97143 -37.54840 -36.58968 -34.24951 -33.83196 -32.64870 -32.01676 -31.08270 -28.28744 -27.34622 -24.52040 -24.23429 -23.41211 -22.51304 -21.81835 -21.35468 -19.63162 -18.92988 -18.13701 -17.88058 -17.44782 -16.73505 -16.61995 -16.52688 -16.13377 -15.83340 -15.77756 -15.58055 -15.00420 -14.92338 -14.80224 -14.71751 -14.48917 -13.97679 -13.90251 -13.57514 -13.50506 -13.17658 -12.98078 -12.91692 -12.86099 -12.48675 -12.41852 -12.29291 -12.07288 -12.03832 -12.00890 -11.87842 -11.74439 -11.51646 -10.98945 -10.89338 -10.06031 -9.99985 -9.65891 -9.30988 -8.05308 -5.38285 -0.12000 0.00503 0.97169 1.34733 1.37840 1.45053 1.71612 2.13947 2.45371 2.53571 3.13625 3.26312 3.50864 3.51509 3.61975 3.86413 3.87437 4.01967 4.06753 4.12122 4.20066 4.34026 4.42952 4.45659 4.58074 4.63195 4.68212 4.83641 4.84311 4.86116 4.87230 4.95255 5.02850 5.03755 5.15560 5.21131 5.33929 5.38120 5.43816 5.64818 5.65796 5.74092 6.19578 6.63786 7.06029 7.34128 7.83642 8.01198 9.16297 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.012346 B = 0.002643 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.328038 B =10592.891733 C =12490.139701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.145 3.855 3 H 0.062 0.938 4 C -0.111 4.111 5 C -0.117 4.117 6 C 0.152 3.848 7 N -0.763 5.763 8 C -0.235 4.235 9 H 0.058 0.942 10 C -0.064 4.064 11 N -0.983 5.983 12 Si 0.954 3.046 13 H -0.281 1.281 14 H -0.293 1.293 15 H -0.253 1.253 16 N -0.714 5.714 17 C 0.517 3.483 18 O -0.574 6.574 19 C -0.108 4.108 20 C -0.074 4.074 21 C -0.063 4.063 22 C -0.143 4.143 23 C 0.095 3.905 24 F -0.140 7.140 25 C -0.159 4.159 26 C -0.012 4.012 27 Cl -0.064 7.064 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.022 0.978 36 H 0.031 0.969 37 H 0.364 0.636 38 H 0.258 0.742 39 H 0.414 0.586 40 H 0.114 0.886 41 H 0.149 0.851 42 H 0.175 0.825 43 H 0.168 0.832 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.784 3.456 -26.736 33.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.041 3.959 3 H 0.080 0.920 4 C -0.149 4.149 5 C -0.155 4.155 6 C 0.026 3.974 7 N -0.409 5.409 8 C -0.366 4.366 9 H 0.076 0.924 10 C -0.256 4.256 11 N -0.634 5.634 12 Si 0.781 3.219 13 H -0.208 1.208 14 H -0.219 1.219 15 H -0.178 1.178 16 N -0.367 5.367 17 C 0.304 3.696 18 O -0.453 6.453 19 C -0.147 4.147 20 C -0.075 4.075 21 C -0.081 4.081 22 C -0.162 4.162 23 C 0.076 3.924 24 F -0.119 7.119 25 C -0.178 4.178 26 C -0.039 4.039 27 Cl -0.035 7.035 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.049 0.951 37 H 0.197 0.803 38 H 0.067 0.933 39 H 0.251 0.749 40 H 0.132 0.868 41 H 0.167 0.833 42 H 0.192 0.808 43 H 0.185 0.815 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -19.867 4.193 -26.497 33.382 hybrid contribution 1.630 0.487 -0.219 1.715 sum -18.237 4.681 -26.716 32.684 Atomic orbital electron populations 1.22079 0.93949 1.03004 1.02139 1.20900 0.94656 0.96411 0.83960 0.92020 1.21752 0.93496 1.02413 0.97280 1.21657 0.96778 0.99894 0.97167 1.20858 0.81967 0.97960 0.96628 1.42814 1.03865 1.66656 1.27527 1.19080 0.90174 1.26304 1.01067 0.92373 1.25507 0.97317 1.02240 1.00529 1.69875 1.07522 1.51589 1.34380 0.85430 0.77982 0.78314 0.80187 1.20753 1.21938 1.17767 1.46043 1.66866 1.14757 1.09033 1.20737 0.76882 0.86919 0.85094 1.90715 1.51472 1.17549 1.85599 1.20829 1.06186 0.98292 0.89373 1.19487 0.93140 0.97521 0.97360 1.21214 0.97608 0.97464 0.91787 1.21539 0.97965 0.96087 1.00581 1.17653 0.96137 0.91884 0.86728 1.91511 1.96741 1.67664 1.55993 1.21046 1.00459 1.01146 0.95173 1.20668 0.91151 0.99012 0.93075 1.98409 1.45793 1.97299 1.61965 0.93626 0.90760 0.90919 0.89503 0.89181 0.91593 0.93127 0.95990 0.95144 0.80343 0.93290 0.74912 0.86759 0.83324 0.80794 0.81476 0.83491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.48 71.98 0.68 -1.62 16 2 C 0.15 2.63 2.57 44.99 0.12 2.75 16 3 H 0.06 1.48 7.58 -2.39 -0.02 1.47 16 4 C -0.11 -2.03 4.75 30.59 0.15 -1.88 16 5 C -0.12 -3.10 5.22 30.59 0.16 -2.94 16 6 C 0.15 5.48 6.26 86.38 0.54 6.02 16 7 N -0.76 -35.94 5.41 -343.45 -1.86 -37.80 16 8 C -0.24 -13.60 10.47 84.03 0.88 -12.72 16 9 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 10 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 11 N -0.98 -63.59 13.97 21.65 0.30 -63.29 16 12 Si 0.95 46.28 27.74 68.60 1.90 48.18 16 13 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 14 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 15 H -0.25 -11.10 6.52 99.48 0.65 -10.45 16 16 N -0.71 -11.22 4.53 -442.54 -2.00 -13.22 16 17 C 0.52 9.81 7.79 87.66 0.68 10.49 16 18 O -0.57 -15.90 15.70 -3.01 -0.05 -15.95 16 19 C -0.11 -1.35 5.34 29.10 0.16 -1.19 16 20 C -0.07 -1.18 4.38 -19.84 -0.09 -1.26 16 21 C -0.06 -0.73 9.68 22.26 0.22 -0.52 16 22 C -0.14 -1.81 10.03 22.32 0.22 -1.59 16 23 C 0.10 1.65 7.30 22.37 0.16 1.82 16 24 F -0.14 -2.62 17.27 44.97 0.78 -1.84 16 25 C -0.16 -3.02 9.81 22.33 0.22 -2.80 16 26 C -0.01 -0.24 6.31 22.32 0.14 -0.10 16 27 Cl -0.06 -1.42 27.40 -2.72 -0.07 -1.50 16 28 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.69 7.75 -2.39 -0.02 1.67 16 34 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 35 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.36 16.51 5.53 -92.71 -0.51 15.99 16 38 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 39 H 0.41 4.37 8.60 -92.71 -0.80 3.57 16 40 H 0.11 1.41 7.12 -2.39 -0.02 1.39 16 41 H 0.15 0.65 8.05 -2.38 -0.02 0.63 16 42 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 43 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 44 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -77.73 387.94 3.36 -74.37 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -0.34 Total: 19.98 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 4.70 Total: -8.93 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -3.56 Total: -114.31 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.05 Total: -15.95 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.78 Total: -1.84 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.90 Total: 48.18 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.07 Total: -1.50 kcal Total: -77.73 3.36 -74.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283232729.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.674 kcal (2) G-P(sol) polarization free energy of solvation -77.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds