Wall clock time and date at job start Wed Apr 1 2020 01:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47052 * 2 1 4 4 N 1.46507 * 109.46981 * 179.97438 * 3 2 1 5 5 C 1.36936 * 119.99857 * 269.99802 * 4 3 2 6 6 H 1.07998 * 119.99726 * 142.67823 * 5 4 3 7 7 C 1.38807 * 120.00110 * 322.67846 * 5 4 3 8 8 N 1.31624 * 119.99939 * 157.17462 * 7 5 4 9 9 Si 1.86800 * 120.00173 * 337.17871 * 7 5 4 10 10 H 1.48499 * 109.46973 * 95.36140 * 9 7 5 11 11 H 1.48501 * 109.47121 * 215.36293 * 9 7 5 12 12 H 1.48498 * 109.47004 * 335.36030 * 9 7 5 13 13 C 1.46496 * 119.99923 * 89.99729 * 4 3 2 14 14 C 1.53002 * 109.47486 * 267.61555 * 13 4 3 15 15 N 1.46500 * 109.47319 * 178.14464 * 14 13 4 16 16 C 1.34778 * 119.99595 * 179.97438 * 15 14 13 17 17 O 1.21272 * 120.00307 * 359.73000 * 16 15 14 18 18 C 1.50701 * 119.99274 * 180.02562 * 16 15 14 19 19 C 1.50706 * 109.46774 * 179.73019 * 18 16 15 20 20 C 1.38253 * 119.97574 * 264.72236 * 19 18 16 21 21 C 1.38178 * 120.03711 * 179.72582 * 20 19 18 22 22 C 1.38495 * 120.00124 * 0.54674 * 21 20 19 23 23 F 1.35097 * 120.02164 * 179.74608 * 22 21 20 24 24 C 1.38425 * 119.95717 * 359.72854 * 22 21 20 25 25 C 1.38332 * 119.96324 * 359.97438 * 24 22 21 26 26 Cl 1.73600 * 120.00059 * 179.97438 * 25 24 22 27 27 H 1.09004 * 109.47015 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47453 * 300.00301 * 1 2 3 29 29 H 1.09002 * 109.46744 * 60.00655 * 1 2 3 30 30 H 1.08997 * 109.47336 * 239.99313 * 2 1 3 31 31 H 1.09004 * 109.46711 * 119.99886 * 2 1 3 32 32 H 1.08992 * 109.47290 * 60.00118 * 3 2 1 33 33 H 1.08994 * 109.47034 * 299.99065 * 3 2 1 34 34 H 0.96994 * 119.99857 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47035 * 147.61452 * 13 4 3 36 36 H 1.09003 * 109.47257 * 27.61941 * 13 4 3 37 37 H 1.09000 * 109.47050 * 58.14512 * 14 13 4 38 38 H 1.09003 * 109.46918 * 298.14666 * 14 13 4 39 39 H 0.96992 * 119.99835 * 0.02562 * 15 14 13 40 40 H 1.09007 * 109.47046 * 299.72136 * 18 16 15 41 41 H 1.08994 * 109.47573 * 59.72703 * 18 16 15 42 42 H 1.07997 * 119.97764 * 0.02562 * 20 19 18 43 43 H 1.08003 * 120.00185 * 180.27539 * 21 20 19 44 44 H 1.07998 * 120.01332 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1892 1.4426 1.1868 6 1 5.1033 0.8756 1.2830 7 6 3.7079 2.1717 2.2655 8 7 4.0639 1.8473 3.4905 9 14 2.5548 3.6131 1.9788 10 1 1.1485 3.1582 2.1230 11 1 2.8355 4.6774 2.9756 12 1 2.7637 4.1494 0.6099 13 6 4.2381 1.4422 -1.2678 14 6 4.5452 0.0009 -1.6791 15 7 5.2392 -0.0015 -2.9693 16 6 5.6119 -1.1682 -3.5318 17 8 5.3772 -2.2157 -2.9677 18 6 6.3263 -1.1704 -4.8588 19 6 6.6352 -2.5897 -5.2605 20 6 7.8725 -3.1354 -4.9728 21 6 8.1551 -4.4384 -5.3355 22 6 7.2026 -5.1950 -5.9976 23 9 7.4803 -6.4673 -6.3570 24 6 5.9658 -4.6468 -6.2907 25 6 5.6824 -3.3441 -5.9214 26 17 4.1319 -2.6554 -6.2890 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6768 1.9562 -0.8900 34 1 3.7279 2.3569 4.2442 35 1 5.1712 1.9926 -1.1482 36 1 3.6315 1.9185 -2.0381 37 1 3.6137 -0.5584 -1.7666 38 1 5.1792 -0.4650 -0.9247 39 1 5.4311 0.8366 -3.4182 40 1 5.6905 -0.7092 -5.6145 41 1 7.2553 -0.6069 -4.7723 42 1 8.6169 -2.5443 -4.4600 43 1 9.1203 -4.8655 -5.1065 44 1 5.2222 -5.2361 -6.8067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317546739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:44 Heat of formation + Delta-G solvation = -49.935843 kcal Electronic energy + Delta-G solvation = -26872.539951 eV Core-core repulsion = 22765.683504 eV Total energy + Delta-G solvation = -4106.856447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.24666 -40.17926 -38.86012 -36.81118 -36.74474 -34.49655 -32.99658 -32.57224 -31.50361 -31.30226 -28.93659 -27.14709 -25.62978 -23.68388 -23.51195 -22.22101 -20.98349 -20.76951 -20.07149 -18.17429 -17.12726 -17.10435 -16.71559 -16.34216 -15.93679 -15.60126 -15.30323 -15.17615 -14.79350 -14.27020 -14.13626 -14.10854 -13.87746 -13.74685 -13.23381 -13.04700 -12.98992 -12.68439 -12.34775 -12.30918 -12.06403 -11.65214 -11.64966 -11.58380 -11.39861 -11.21152 -11.16871 -10.80924 -10.73632 -10.34069 -10.16608 -9.83627 -9.73675 -9.48499 -9.31593 -8.89369 -8.73013 -8.54639 -6.92539 -6.03991 -3.47028 0.63377 0.73273 1.74443 2.76900 2.97657 3.28346 3.43225 3.46890 3.48415 3.87559 4.23007 4.33306 4.48409 4.52769 4.74720 4.84158 5.00594 5.04063 5.13354 5.27067 5.32726 5.54047 5.55043 5.61472 5.65454 5.72563 5.74336 5.83929 5.92748 6.01099 6.10084 6.15087 6.35720 6.41108 6.49133 6.53640 6.56455 6.60855 6.82807 6.93347 7.10248 7.67665 8.00381 8.31980 8.39874 8.92691 9.65823 10.04428 11.11207 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.018194 B = 0.002352 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.568216 B =11904.066955 C =12456.567680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.136 3.864 4 N -0.600 5.600 5 C -0.273 4.273 6 H 0.079 0.921 7 C 0.039 3.961 8 N -0.896 5.896 9 Si 0.879 3.121 10 H -0.285 1.285 11 H -0.302 1.302 12 H -0.270 1.270 13 C 0.141 3.859 14 C 0.096 3.904 15 N -0.725 5.725 16 C 0.512 3.488 17 O -0.531 6.531 18 C -0.110 4.110 19 C -0.062 4.062 20 C -0.066 4.066 21 C -0.147 4.147 22 C 0.109 3.891 23 F -0.134 7.134 24 C -0.147 4.147 25 C 0.007 3.993 26 Cl -0.052 7.052 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.037 0.963 34 H 0.264 0.736 35 H 0.059 0.941 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.397 0.603 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.011 -7.231 -22.702 24.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.011 3.989 4 N -0.322 5.322 5 C -0.401 4.401 6 H 0.096 0.904 7 C -0.162 4.162 8 N -0.537 5.537 9 Si 0.710 3.290 10 H -0.213 1.213 11 H -0.230 1.230 12 H -0.195 1.195 13 C 0.014 3.986 14 C -0.029 4.029 15 N -0.376 5.376 16 C 0.296 3.704 17 O -0.407 6.407 18 C -0.150 4.150 19 C -0.063 4.063 20 C -0.084 4.084 21 C -0.166 4.166 22 C 0.090 3.910 23 F -0.113 7.113 24 C -0.166 4.166 25 C -0.020 4.020 26 Cl -0.023 7.023 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.230 0.770 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.161 0.839 43 H 0.160 0.840 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.700 -7.908 -22.104 23.942 hybrid contribution -0.730 0.912 -0.246 1.194 sum 3.970 -6.996 -22.350 23.753 Atomic orbital electron populations 1.21746 0.97345 1.00667 1.00963 1.22117 0.93856 1.00076 1.02111 1.21268 0.84118 0.94427 0.99078 1.44008 1.00316 1.86132 1.01710 1.18723 1.09264 1.25115 0.87035 0.90368 1.25436 0.97915 0.97709 0.95125 1.69887 1.46445 1.39491 0.97836 0.86904 0.80317 0.84081 0.77748 1.21312 1.23004 1.19491 1.20976 0.96849 0.92262 0.88547 1.22388 0.96564 1.01407 0.82583 1.46042 1.59933 1.08067 1.23588 1.20232 0.79507 0.84265 0.86370 1.90743 1.54952 1.31318 1.63716 1.20761 1.03075 0.94223 0.96902 1.19233 0.93274 0.95751 0.98091 1.20854 0.95845 0.94429 0.97265 1.21208 1.00098 0.94810 1.00451 1.17441 0.94197 0.79852 0.99550 1.91523 1.93934 1.36037 1.89807 1.20909 0.96957 0.94767 1.03977 1.20430 0.87781 0.93428 1.00386 1.98391 1.26674 1.84238 1.92968 0.93473 0.93137 0.93589 0.92889 0.91311 0.92791 0.94463 0.92634 0.92251 0.94010 0.91883 0.91304 0.77027 0.87445 0.87297 0.83893 0.83963 0.83670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.91 37.16 0.37 -2.04 16 2 C -0.14 -2.73 6.26 -26.73 -0.17 -2.90 16 3 C 0.14 2.87 4.56 -4.04 -0.02 2.85 16 4 N -0.60 -13.53 2.08 -173.25 -0.36 -13.89 16 5 C -0.27 -7.36 9.92 -15.06 -0.15 -7.51 16 6 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 7 C 0.04 1.10 5.30 -17.43 -0.09 1.01 16 8 N -0.90 -26.89 13.97 55.49 0.78 -26.12 16 9 Si 0.88 21.71 25.07 -169.99 -4.26 17.45 16 10 H -0.29 -6.88 6.66 56.52 0.38 -6.51 16 11 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.14 2.53 5.83 -4.04 -0.02 2.50 16 14 C 0.10 1.63 5.99 -4.04 -0.02 1.61 16 15 N -0.72 -9.35 5.56 -60.29 -0.33 -9.68 16 16 C 0.51 6.90 7.82 -10.98 -0.09 6.81 16 17 O -0.53 -9.61 16.03 5.56 0.09 -9.52 16 18 C -0.11 -0.99 5.34 -29.03 -0.16 -1.14 16 19 C -0.06 -0.63 4.38 -104.58 -0.46 -1.09 16 20 C -0.07 -0.58 9.68 -39.60 -0.38 -0.97 16 21 C -0.15 -1.29 10.03 -39.51 -0.40 -1.68 16 22 C 0.11 1.09 7.30 -39.42 -0.29 0.80 16 23 F -0.13 -1.39 17.27 2.25 0.04 -1.35 16 24 C -0.15 -1.48 9.81 -39.48 -0.39 -1.86 16 25 C 0.01 0.07 6.31 -39.51 -0.25 -0.18 16 26 Cl -0.05 -0.55 27.40 -51.86 -1.42 -1.97 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.98 6.38 -51.93 -0.33 0.65 16 31 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.05 1.26 3.27 -51.93 -0.17 1.09 16 33 H 0.04 0.70 7.88 -51.93 -0.41 0.29 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.06 1.05 8.06 -51.93 -0.42 0.63 16 36 H 0.04 0.66 7.87 -51.93 -0.41 0.25 16 37 H 0.06 1.17 6.38 -51.93 -0.33 0.84 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.40 3.73 8.47 -40.82 -0.35 3.38 16 40 H 0.11 0.81 7.12 -51.93 -0.37 0.44 16 41 H 0.11 0.66 8.05 -51.93 -0.42 0.24 16 42 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 43 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 44 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 381.39 15.07 5.75 5.75 Total: -1.00 -32.85 381.39 -8.40 -41.26 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.17 Total: 1.85 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -2.51 Total: -3.78 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.08 Total: -49.68 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.26 Total: 17.45 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.42 Total: -1.97 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.85 -8.40 -41.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317546739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.678 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds