Wall clock time and date at job start Wed Apr 1 2020 01:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47052 * 2 1 4 4 N 1.46507 * 109.46981 * 179.97438 * 3 2 1 5 5 C 1.36936 * 119.99857 * 269.99802 * 4 3 2 6 6 H 1.07998 * 119.99726 * 142.67823 * 5 4 3 7 7 C 1.38807 * 120.00110 * 322.67846 * 5 4 3 8 8 N 1.31624 * 119.99939 * 157.17462 * 7 5 4 9 9 Si 1.86800 * 120.00173 * 337.17871 * 7 5 4 10 10 H 1.48499 * 109.46973 * 95.36140 * 9 7 5 11 11 H 1.48501 * 109.47121 * 215.36293 * 9 7 5 12 12 H 1.48498 * 109.47004 * 335.36030 * 9 7 5 13 13 C 1.46496 * 119.99923 * 89.99729 * 4 3 2 14 14 C 1.53002 * 109.47486 * 267.61555 * 13 4 3 15 15 N 1.46500 * 109.47319 * 178.14464 * 14 13 4 16 16 C 1.34778 * 119.99595 * 179.97438 * 15 14 13 17 17 O 1.21272 * 120.00307 * 359.73000 * 16 15 14 18 18 C 1.50701 * 119.99274 * 180.02562 * 16 15 14 19 19 C 1.50706 * 109.46774 * 179.73019 * 18 16 15 20 20 C 1.38253 * 119.97574 * 264.72236 * 19 18 16 21 21 C 1.38178 * 120.03711 * 179.72582 * 20 19 18 22 22 C 1.38495 * 120.00124 * 0.54674 * 21 20 19 23 23 F 1.35097 * 120.02164 * 179.74608 * 22 21 20 24 24 C 1.38425 * 119.95717 * 359.72854 * 22 21 20 25 25 C 1.38332 * 119.96324 * 359.97438 * 24 22 21 26 26 Cl 1.73600 * 120.00059 * 179.97438 * 25 24 22 27 27 H 1.09004 * 109.47015 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47453 * 300.00301 * 1 2 3 29 29 H 1.09002 * 109.46744 * 60.00655 * 1 2 3 30 30 H 1.08997 * 109.47336 * 239.99313 * 2 1 3 31 31 H 1.09004 * 109.46711 * 119.99886 * 2 1 3 32 32 H 1.08992 * 109.47290 * 60.00118 * 3 2 1 33 33 H 1.08994 * 109.47034 * 299.99065 * 3 2 1 34 34 H 0.96994 * 119.99857 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47035 * 147.61452 * 13 4 3 36 36 H 1.09003 * 109.47257 * 27.61941 * 13 4 3 37 37 H 1.09000 * 109.47050 * 58.14512 * 14 13 4 38 38 H 1.09003 * 109.46918 * 298.14666 * 14 13 4 39 39 H 0.96992 * 119.99835 * 0.02562 * 15 14 13 40 40 H 1.09007 * 109.47046 * 299.72136 * 18 16 15 41 41 H 1.08994 * 109.47573 * 59.72703 * 18 16 15 42 42 H 1.07997 * 119.97764 * 0.02562 * 20 19 18 43 43 H 1.08003 * 120.00185 * 180.27539 * 21 20 19 44 44 H 1.07998 * 120.01332 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1892 1.4426 1.1868 6 1 5.1033 0.8756 1.2830 7 6 3.7079 2.1717 2.2655 8 7 4.0639 1.8473 3.4905 9 14 2.5548 3.6131 1.9788 10 1 1.1485 3.1582 2.1230 11 1 2.8355 4.6774 2.9756 12 1 2.7637 4.1494 0.6099 13 6 4.2381 1.4422 -1.2678 14 6 4.5452 0.0009 -1.6791 15 7 5.2392 -0.0015 -2.9693 16 6 5.6119 -1.1682 -3.5318 17 8 5.3772 -2.2157 -2.9677 18 6 6.3263 -1.1704 -4.8588 19 6 6.6352 -2.5897 -5.2605 20 6 7.8725 -3.1354 -4.9728 21 6 8.1551 -4.4384 -5.3355 22 6 7.2026 -5.1950 -5.9976 23 9 7.4803 -6.4673 -6.3570 24 6 5.9658 -4.6468 -6.2907 25 6 5.6824 -3.3441 -5.9214 26 17 4.1319 -2.6554 -6.2890 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6768 1.9562 -0.8900 34 1 3.7279 2.3569 4.2442 35 1 5.1712 1.9926 -1.1482 36 1 3.6315 1.9185 -2.0381 37 1 3.6137 -0.5584 -1.7666 38 1 5.1792 -0.4650 -0.9247 39 1 5.4311 0.8366 -3.4182 40 1 5.6905 -0.7092 -5.6145 41 1 7.2553 -0.6069 -4.7723 42 1 8.6169 -2.5443 -4.4600 43 1 9.1203 -4.8655 -5.1065 44 1 5.2222 -5.2361 -6.8067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317546739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:43 Heat of formation + Delta-G solvation = -70.114899 kcal Electronic energy + Delta-G solvation = -26873.414981 eV Core-core repulsion = 22765.683504 eV Total energy + Delta-G solvation = -4107.731477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.01719 -41.10067 -39.81706 -38.46111 -37.52419 -35.82469 -34.35497 -33.84086 -33.22207 -32.01124 -30.28006 -28.14064 -27.37597 -25.21781 -24.22503 -23.15328 -22.42406 -22.36389 -21.26751 -18.93243 -18.79353 -18.03693 -17.86750 -17.47600 -17.18670 -16.71517 -16.45130 -16.26492 -15.90306 -15.64057 -15.49239 -15.02970 -14.87272 -14.79244 -14.70856 -14.45206 -14.33755 -14.01487 -13.90763 -13.23208 -13.09661 -13.04501 -12.90160 -12.81302 -12.49944 -12.39531 -12.31557 -12.27254 -11.99452 -11.95209 -11.78037 -11.65848 -11.23028 -11.00235 -10.59781 -10.04386 -9.98805 -9.65112 -8.81463 -8.19414 -5.59166 -0.11063 0.01835 0.97190 1.33427 1.43115 1.54698 1.72127 2.11190 2.43670 2.51645 3.05017 3.14782 3.46387 3.52315 3.62863 3.88405 4.01080 4.07380 4.12481 4.22249 4.28522 4.34764 4.42818 4.47581 4.56359 4.61074 4.64641 4.73832 4.83606 4.84699 4.86915 5.03032 5.04289 5.09576 5.16656 5.22778 5.25174 5.37763 5.51708 5.54763 5.66528 5.95149 6.18673 6.66147 6.98718 7.36472 7.63122 8.03176 9.00271 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.018194 B = 0.002352 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.568216 B =11904.066955 C =12456.567680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.130 3.870 4 N -0.613 5.613 5 C -0.258 4.258 6 H 0.036 0.964 7 C -0.020 4.020 8 N -0.949 5.949 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.311 1.311 12 H -0.250 1.250 13 C 0.142 3.858 14 C 0.116 3.884 15 N -0.712 5.712 16 C 0.510 3.490 17 O -0.582 6.582 18 C -0.099 4.099 19 C -0.076 4.076 20 C -0.067 4.067 21 C -0.146 4.146 22 C 0.096 3.904 23 F -0.140 7.140 24 C -0.156 4.156 25 C -0.009 4.009 26 Cl -0.057 7.057 27 H 0.060 0.940 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.029 0.971 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.263 0.737 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.048 0.952 38 H 0.027 0.973 39 H 0.418 0.582 40 H 0.127 0.873 41 H 0.147 0.853 42 H 0.169 0.831 43 H 0.165 0.835 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.569 -5.734 -25.541 26.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.005 3.995 4 N -0.335 5.335 5 C -0.388 4.388 6 H 0.054 0.946 7 C -0.216 4.216 8 N -0.593 5.593 9 Si 0.775 3.225 10 H -0.204 1.204 11 H -0.240 1.240 12 H -0.173 1.173 13 C 0.016 3.984 14 C -0.011 4.011 15 N -0.365 5.365 16 C 0.297 3.703 17 O -0.461 6.461 18 C -0.139 4.139 19 C -0.077 4.077 20 C -0.085 4.085 21 C -0.165 4.165 22 C 0.076 3.924 23 F -0.118 7.118 24 C -0.176 4.176 25 C -0.035 4.035 26 Cl -0.028 7.028 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.255 0.745 40 H 0.145 0.855 41 H 0.165 0.835 42 H 0.186 0.814 43 H 0.182 0.818 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.259 -6.384 -25.026 26.176 hybrid contribution -0.512 0.305 0.584 0.834 sum 3.747 -6.079 -24.442 25.464 Atomic orbital electron populations 1.21701 0.94535 1.01991 1.01910 1.21999 0.96314 0.98704 1.00497 1.21406 0.83047 0.95424 0.99613 1.44123 1.01242 1.86320 1.01829 1.18554 1.07891 1.23381 0.88968 0.94582 1.26084 1.00556 1.00348 0.94655 1.70029 1.49357 1.41049 0.98884 0.85807 0.78531 0.80009 0.78124 1.20376 1.24016 1.17345 1.21108 0.97213 0.92708 0.87340 1.21828 0.95356 1.00266 0.83646 1.45818 1.59294 1.09360 1.22055 1.21022 0.78610 0.83254 0.87412 1.90730 1.56886 1.33129 1.65393 1.20796 1.04545 0.94391 0.94122 1.19496 0.93687 0.96403 0.98164 1.21211 0.95972 0.94628 0.96707 1.21520 1.00715 0.94787 0.99429 1.17643 0.94649 0.79882 1.00211 1.91507 1.93971 1.36405 1.89954 1.21055 0.97396 0.94902 1.04198 1.20603 0.87850 0.93859 1.01230 1.98380 1.27101 1.84272 1.93057 0.92087 0.93717 0.91036 0.92239 0.95234 0.94910 0.90898 0.92855 0.92031 0.90166 0.93377 0.95437 0.74519 0.85546 0.83497 0.81370 0.81776 0.82975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 9.91 71.98 0.71 -3.56 16 2 C -0.14 -5.08 6.26 30.59 0.19 -4.89 16 3 C 0.13 5.19 4.56 86.38 0.39 5.59 16 4 N -0.61 -27.12 2.08 -702.03 -1.46 -28.58 16 5 C -0.26 -14.28 9.92 84.03 0.83 -13.44 16 6 H 0.04 2.25 8.06 -2.91 -0.02 2.23 16 7 C -0.02 -1.15 5.30 84.86 0.45 -0.70 16 8 N -0.95 -59.19 13.97 21.65 0.30 -58.89 16 9 Si 0.95 44.89 25.07 68.60 1.72 46.61 16 10 H -0.28 -12.60 6.66 99.48 0.66 -11.94 16 11 H -0.31 -15.09 7.11 99.48 0.71 -14.39 16 12 H -0.25 -10.90 7.11 99.48 0.71 -10.19 16 13 C 0.14 4.81 5.83 86.38 0.50 5.31 16 14 C 0.12 3.88 5.99 86.38 0.52 4.40 16 15 N -0.71 -16.86 5.56 -463.06 -2.57 -19.43 16 16 C 0.51 12.87 7.82 87.66 0.69 13.55 16 17 O -0.58 -20.93 16.03 -3.01 -0.05 -20.98 16 18 C -0.10 -1.49 5.34 29.10 0.16 -1.33 16 19 C -0.08 -1.40 4.38 -19.84 -0.09 -1.48 16 20 C -0.07 -1.03 9.68 22.26 0.22 -0.82 16 21 C -0.15 -2.30 10.03 22.32 0.22 -2.08 16 22 C 0.10 1.83 7.30 22.38 0.16 1.99 16 23 F -0.14 -2.81 17.27 44.97 0.78 -2.03 16 24 C -0.16 -3.06 9.81 22.34 0.22 -2.84 16 25 C -0.01 -0.17 6.31 22.32 0.14 -0.03 16 26 Cl -0.06 -1.16 27.40 -2.72 -0.07 -1.23 16 27 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 2.13 6.38 -2.39 -0.02 2.12 16 31 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.03 1.47 3.27 -2.39 -0.01 1.46 16 33 H 0.07 2.42 7.88 -2.39 -0.02 2.40 16 34 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 35 H 0.06 2.07 8.06 -2.39 -0.02 2.05 16 36 H 0.08 2.16 7.87 -2.39 -0.02 2.14 16 37 H 0.05 1.76 6.38 -2.39 -0.02 1.75 16 38 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.42 6.37 8.47 -92.71 -0.79 5.58 16 40 H 0.13 1.46 7.12 -2.38 -0.02 1.44 16 41 H 0.15 1.10 8.05 -2.39 -0.02 1.08 16 42 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 44 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -75.51 381.39 4.16 -71.35 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.20 Total: 13.52 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 5.32 Total: -0.33 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -3.73 Total: -106.91 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.05 Total: -20.98 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.72 Total: 46.61 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.07 Total: -1.23 kcal Total: -75.51 4.16 -71.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317546739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.236 kcal (2) G-P(sol) polarization free energy of solvation -75.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds