Wall clock time and date at job start Wed Apr 1 2020 00:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47055 * 2 1 4 4 H 1.08998 * 109.46770 * 55.38065 * 3 2 1 5 5 C 1.53005 * 109.46963 * 175.37442 * 3 2 1 6 6 N 1.46497 * 109.46761 * 175.00077 * 5 3 2 7 7 C 1.34779 * 119.99760 * 180.02562 * 6 5 3 8 8 O 1.21709 * 119.99738 * 359.72528 * 7 6 5 9 9 C 1.46556 * 120.00074 * 180.02562 * 7 6 5 10 10 C 1.37928 * 126.23375 * 179.97438 * 9 7 6 11 11 C 1.39741 * 107.12153 * 179.97438 * 10 9 7 12 12 C 1.35660 * 107.88915 * 0.02562 * 11 10 9 13 13 Cl 1.73604 * 125.57570 * 179.97438 * 12 11 10 14 14 N 1.35576 * 108.84649 * 359.73121 * 12 11 10 15 15 H 0.97000 * 125.69746 * 180.28801 * 14 12 11 16 16 N 1.46901 * 109.47237 * 295.37972 * 3 2 1 17 17 C 1.46898 * 110.99464 * 302.88408 * 16 3 2 18 18 C 1.50703 * 109.46659 * 185.63802 * 17 16 3 19 19 O 1.21299 * 120.00148 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00118 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00163 * 179.97438 * 20 18 17 22 22 H 1.07995 * 120.00339 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99845 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00317 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99860 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47344 * 90.00363 * 25 23 21 27 27 H 1.48504 * 109.47292 * 210.00358 * 25 23 21 28 28 H 1.48504 * 109.47295 * 330.00619 * 25 23 21 29 29 H 1.08998 * 109.47401 * 58.72823 * 1 2 3 30 30 H 1.09004 * 109.47513 * 178.73457 * 1 2 3 31 31 H 1.09008 * 109.47219 * 298.72434 * 1 2 3 32 32 H 1.08999 * 109.46959 * 240.00089 * 2 1 3 33 33 H 1.08998 * 109.47308 * 120.00260 * 2 1 3 34 34 H 1.08999 * 109.46695 * 55.00258 * 5 3 2 35 35 H 1.08993 * 109.47235 * 295.00160 * 5 3 2 36 36 H 0.97001 * 120.00748 * 0.02562 * 6 5 3 37 37 H 1.08000 * 126.43803 * 0.02562 * 10 9 7 38 38 H 1.08002 * 126.05736 * 180.02562 * 11 10 9 39 39 H 1.00896 * 110.99562 * 66.84017 * 16 3 2 40 40 H 1.08994 * 109.47627 * 305.63409 * 17 16 3 41 41 H 1.08999 * 109.46978 * 65.64340 * 17 16 3 42 42 H 0.97002 * 119.99791 * 359.97438 * 20 18 17 43 43 H 0.96998 * 120.00674 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6106 1.9796 0.8457 5 6 3.5656 1.4440 0.1163 6 7 4.0630 2.8167 -0.0035 7 6 5.3862 3.0627 0.0687 8 8 6.1673 2.1450 0.2385 9 6 5.8838 4.4360 -0.0506 10 6 7.2037 4.8326 0.0047 11 6 7.2231 6.2209 -0.1534 12 6 5.9417 6.6417 -0.2991 13 17 5.4387 8.2877 -0.5259 14 7 5.1185 5.5658 -0.2441 15 1 4.1522 5.5878 -0.3253 16 7 1.6435 2.1020 -1.2513 17 6 2.1482 1.3651 -2.4175 18 6 1.8428 2.1412 -3.6727 19 8 1.2614 3.2034 -3.6027 20 7 2.2147 1.6545 -4.8732 21 6 1.9363 2.3602 -6.0152 22 1 1.4195 3.3064 -5.9528 23 6 2.3203 1.8586 -7.2528 24 7 2.9497 0.7076 -7.3288 25 14 1.9417 2.8205 -8.8087 26 1 3.0690 3.7392 -9.1093 27 1 1.7562 1.8776 -9.9409 28 1 0.6989 3.6095 -8.6128 29 1 -0.3634 0.5334 -0.8783 30 1 -0.3634 -1.0274 -0.0227 31 1 -0.3634 0.4939 0.9013 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.9912 0.8326 -0.6793 35 1 3.8566 1.0353 1.0839 36 1 3.4401 3.5487 -0.1348 37 1 8.0611 4.1907 0.1432 38 1 8.1025 6.8479 -0.1587 39 1 0.6419 2.2135 -1.2996 40 1 3.2262 1.2331 -2.3253 41 1 1.6655 0.3891 -2.4673 42 1 2.6793 0.8048 -4.9293 43 1 3.2174 0.3572 -8.1928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318571231.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:03 Heat of formation + Delta-G solvation = -37.664143 kcal Electronic energy + Delta-G solvation = -27338.204294 eV Core-core repulsion = 23251.799949 eV Total energy + Delta-G solvation = -4086.404345 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.49719 -39.51082 -38.52587 -37.31309 -36.90546 -34.30610 -33.92869 -31.83933 -31.44994 -31.20404 -29.86526 -28.32016 -26.61005 -24.38914 -23.87085 -22.27169 -20.83603 -20.58211 -20.28044 -19.37219 -18.77444 -17.94290 -16.90636 -16.37481 -15.95153 -15.63447 -15.41045 -14.98406 -14.52541 -14.35225 -14.27724 -14.16997 -14.06781 -13.82461 -13.54695 -13.22625 -13.19059 -12.89562 -12.64845 -12.36925 -12.03161 -11.88394 -11.83124 -11.54022 -11.49076 -11.43854 -11.11170 -10.93359 -10.86663 -10.42064 -10.24787 -10.19521 -9.53763 -9.34342 -9.16000 -8.58723 -8.34241 -8.16158 -7.99489 -6.44367 -3.85531 1.18598 1.41402 2.36976 2.98379 3.08406 3.15702 3.24685 3.29788 3.30284 3.86550 4.04330 4.27581 4.51993 4.69107 4.83161 4.90939 4.99207 5.07376 5.10343 5.18869 5.22893 5.35750 5.50490 5.52441 5.66692 5.67545 5.75025 5.81595 5.86321 5.91827 6.01234 6.12601 6.21076 6.26022 6.33898 6.54098 6.90183 7.04780 7.44970 7.49165 7.52147 8.02627 8.10574 8.57490 9.14711 9.50971 10.01801 10.73214 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.007059 B = 0.003496 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3965.724811 B = 8008.159381 C =10525.011661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.072 3.928 4 H 0.089 0.911 5 C 0.128 3.872 6 N -0.712 5.712 7 C 0.588 3.412 8 O -0.532 6.532 9 C -0.029 4.029 10 C -0.102 4.102 11 C -0.179 4.179 12 C 0.088 3.912 13 Cl -0.016 7.016 14 N -0.528 5.528 15 H 0.423 0.577 16 N -0.660 5.660 17 C 0.043 3.957 18 C 0.440 3.560 19 O -0.585 6.585 20 N -0.562 5.562 21 C -0.301 4.301 22 H 0.102 0.898 23 C 0.024 3.976 24 N -0.900 5.900 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.270 1.270 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.405 0.595 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.353 0.647 40 H 0.086 0.914 41 H 0.049 0.951 42 H 0.392 0.608 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.752 4.540 18.065 18.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.039 4.039 4 H 0.107 0.893 5 C 0.004 3.996 6 N -0.363 5.363 7 C 0.375 3.625 8 O -0.409 6.409 9 C -0.143 4.143 10 C -0.128 4.128 11 C -0.205 4.205 12 C -0.055 4.055 13 Cl 0.012 6.988 14 N -0.127 5.127 15 H 0.262 0.738 16 N -0.293 5.293 17 C -0.089 4.089 18 C 0.226 3.774 19 O -0.470 6.470 20 N -0.198 5.198 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.178 4.178 24 N -0.541 5.541 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.240 0.760 37 H 0.175 0.825 38 H 0.172 0.828 39 H 0.173 0.827 40 H 0.104 0.896 41 H 0.067 0.933 42 H 0.225 0.775 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.267 5.030 18.023 18.994 hybrid contribution -1.342 -0.352 -1.172 1.816 sum 1.925 4.678 16.851 17.593 Atomic orbital electron populations 1.21758 0.95219 1.02075 1.01994 1.22201 0.96799 0.97775 1.03204 1.21931 0.94141 0.93784 0.94017 0.89256 1.21452 0.93011 0.83052 1.02124 1.45683 1.06691 1.10475 1.73435 1.16924 0.82388 0.86212 0.76984 1.90851 1.55983 1.43930 1.50124 1.20502 0.91771 0.85895 1.16140 1.21276 0.94793 0.94272 1.02467 1.20662 0.94338 0.95185 1.10323 1.21038 0.90675 0.82115 1.11677 1.98410 1.91779 1.12780 1.95788 1.42056 1.09757 1.05132 1.55802 0.73780 1.60205 1.19564 1.49921 0.99615 1.21768 1.01172 0.95395 0.90587 1.19780 0.85404 0.87958 0.84276 1.90511 1.46150 1.23790 1.86543 1.41864 1.51371 1.21754 1.04840 1.19677 1.35385 1.04792 0.83177 0.87980 1.25260 0.96763 0.96360 0.99440 1.69605 1.39453 1.18596 1.26448 0.85874 0.79021 0.78984 0.80506 1.20355 1.20887 1.19438 0.92444 0.92416 0.92579 0.90901 0.91225 0.91001 0.90906 0.75982 0.82501 0.82843 0.82667 0.89556 0.93297 0.77517 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.70 37.16 0.36 -1.01 16 2 C -0.16 -1.47 5.10 -26.73 -0.14 -1.61 16 3 C 0.07 0.72 2.70 -67.71 -0.18 0.54 16 4 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 5 C 0.13 1.44 4.76 -4.04 -0.02 1.42 16 6 N -0.71 -8.56 5.38 -61.66 -0.33 -8.89 16 7 C 0.59 8.28 7.78 -12.91 -0.10 8.18 16 8 O -0.53 -9.04 16.88 5.18 0.09 -8.95 16 9 C -0.03 -0.37 7.06 -81.93 -0.58 -0.95 16 10 C -0.10 -1.22 10.65 -39.13 -0.42 -1.63 16 11 C -0.18 -1.91 10.78 -39.94 -0.43 -2.34 16 12 C 0.09 0.96 7.74 -16.82 -0.13 0.83 16 13 Cl -0.02 -0.16 29.30 -51.86 -1.52 -1.68 16 14 N -0.53 -5.80 6.00 -6.54 -0.04 -5.84 16 15 H 0.42 3.97 8.19 -40.82 -0.33 3.64 16 16 N -0.66 -8.86 5.32 -107.99 -0.57 -9.43 16 17 C 0.04 0.70 5.31 -4.98 -0.03 0.68 16 18 C 0.44 9.97 7.83 -10.99 -0.09 9.88 16 19 O -0.59 -15.10 15.90 5.54 0.09 -15.01 16 20 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 21 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 22 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 23 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 24 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 25 Si 0.93 21.01 29.55 -169.99 -5.02 15.98 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 29 H 0.06 0.59 6.87 -51.93 -0.36 0.23 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.07 0.75 6.23 -51.93 -0.32 0.43 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.93 6.61 -51.93 -0.34 0.59 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.40 4.49 7.27 -40.82 -0.30 4.19 16 37 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 39 H 0.35 4.88 7.28 -39.29 -0.29 4.60 16 40 H 0.09 1.40 6.22 -51.93 -0.32 1.08 16 41 H 0.05 0.73 6.48 -51.93 -0.34 0.40 16 42 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 43 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -32.32 377.94 -8.33 -40.65 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: -5.39 Total: 19.24 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -1.99 Total: 6.07 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -0.28 Total: -61.99 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: 0.18 Total: -23.96 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.52 Total: -1.68 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.32 -8.33 -40.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318571231.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.985 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds