Wall clock time and date at job start Wed Apr 1 2020 00:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47055 * 2 1 4 4 H 1.08998 * 109.46770 * 55.38065 * 3 2 1 5 5 C 1.53005 * 109.46963 * 175.37442 * 3 2 1 6 6 N 1.46497 * 109.46761 * 175.00077 * 5 3 2 7 7 C 1.34779 * 119.99760 * 180.02562 * 6 5 3 8 8 O 1.21709 * 119.99738 * 359.72528 * 7 6 5 9 9 C 1.46556 * 120.00074 * 180.02562 * 7 6 5 10 10 C 1.37928 * 126.23375 * 179.97438 * 9 7 6 11 11 C 1.39741 * 107.12153 * 179.97438 * 10 9 7 12 12 C 1.35660 * 107.88915 * 0.02562 * 11 10 9 13 13 Cl 1.73604 * 125.57570 * 179.97438 * 12 11 10 14 14 N 1.35576 * 108.84649 * 359.73121 * 12 11 10 15 15 H 0.97000 * 125.69746 * 180.28801 * 14 12 11 16 16 N 1.46901 * 109.47237 * 295.37972 * 3 2 1 17 17 C 1.46898 * 110.99464 * 302.88408 * 16 3 2 18 18 C 1.50703 * 109.46659 * 185.63802 * 17 16 3 19 19 O 1.21299 * 120.00148 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00118 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00163 * 179.97438 * 20 18 17 22 22 H 1.07995 * 120.00339 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99845 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00317 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99860 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47344 * 90.00363 * 25 23 21 27 27 H 1.48504 * 109.47292 * 210.00358 * 25 23 21 28 28 H 1.48504 * 109.47295 * 330.00619 * 25 23 21 29 29 H 1.08998 * 109.47401 * 58.72823 * 1 2 3 30 30 H 1.09004 * 109.47513 * 178.73457 * 1 2 3 31 31 H 1.09008 * 109.47219 * 298.72434 * 1 2 3 32 32 H 1.08999 * 109.46959 * 240.00089 * 2 1 3 33 33 H 1.08998 * 109.47308 * 120.00260 * 2 1 3 34 34 H 1.08999 * 109.46695 * 55.00258 * 5 3 2 35 35 H 1.08993 * 109.47235 * 295.00160 * 5 3 2 36 36 H 0.97001 * 120.00748 * 0.02562 * 6 5 3 37 37 H 1.08000 * 126.43803 * 0.02562 * 10 9 7 38 38 H 1.08002 * 126.05736 * 180.02562 * 11 10 9 39 39 H 1.00896 * 110.99562 * 66.84017 * 16 3 2 40 40 H 1.08994 * 109.47627 * 305.63409 * 17 16 3 41 41 H 1.08999 * 109.46978 * 65.64340 * 17 16 3 42 42 H 0.97002 * 119.99791 * 359.97438 * 20 18 17 43 43 H 0.96998 * 120.00674 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6106 1.9796 0.8457 5 6 3.5656 1.4440 0.1163 6 7 4.0630 2.8167 -0.0035 7 6 5.3862 3.0627 0.0687 8 8 6.1673 2.1450 0.2385 9 6 5.8838 4.4360 -0.0506 10 6 7.2037 4.8326 0.0047 11 6 7.2231 6.2209 -0.1534 12 6 5.9417 6.6417 -0.2991 13 17 5.4387 8.2877 -0.5259 14 7 5.1185 5.5658 -0.2441 15 1 4.1522 5.5878 -0.3253 16 7 1.6435 2.1020 -1.2513 17 6 2.1482 1.3651 -2.4175 18 6 1.8428 2.1412 -3.6727 19 8 1.2614 3.2034 -3.6027 20 7 2.2147 1.6545 -4.8732 21 6 1.9363 2.3602 -6.0152 22 1 1.4195 3.3064 -5.9528 23 6 2.3203 1.8586 -7.2528 24 7 2.9497 0.7076 -7.3288 25 14 1.9417 2.8205 -8.8087 26 1 3.0690 3.7392 -9.1093 27 1 1.7562 1.8776 -9.9409 28 1 0.6989 3.6095 -8.6128 29 1 -0.3634 0.5334 -0.8783 30 1 -0.3634 -1.0274 -0.0227 31 1 -0.3634 0.4939 0.9013 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.9912 0.8326 -0.6793 35 1 3.8566 1.0353 1.0839 36 1 3.4401 3.5487 -0.1348 37 1 8.0611 4.1907 0.1432 38 1 8.1025 6.8479 -0.1587 39 1 0.6419 2.2135 -1.2996 40 1 3.2262 1.2331 -2.3253 41 1 1.6655 0.3891 -2.4673 42 1 2.6793 0.8048 -4.9293 43 1 3.2174 0.3572 -8.1928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318571231.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:02 Heat of formation + Delta-G solvation = -62.314870 kcal Electronic energy + Delta-G solvation = -27339.273229 eV Core-core repulsion = 23251.799949 eV Total energy + Delta-G solvation = -4087.473281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.40644 -40.65346 -40.01464 -38.61814 -37.73877 -35.97362 -35.28743 -33.31886 -32.77482 -32.32999 -30.82366 -29.33364 -28.05111 -26.10053 -24.80057 -23.17729 -21.79705 -21.68771 -21.27144 -20.79016 -20.01822 -19.67083 -18.34099 -17.38377 -17.14072 -16.87507 -16.53347 -16.46465 -15.90326 -15.87238 -15.36009 -15.26661 -15.16211 -14.95958 -14.82161 -14.34090 -14.06039 -14.05472 -13.75198 -13.56245 -13.53336 -13.17903 -12.91992 -12.79781 -12.70703 -12.42990 -12.34782 -12.29704 -12.13980 -11.86080 -11.68186 -11.50720 -11.30838 -10.36022 -10.23329 -10.17113 -10.02140 -9.37890 -9.24506 -8.47605 -5.96370 0.22344 0.55502 1.36382 1.40175 1.48136 1.52545 2.03146 2.04878 2.20036 2.27605 2.27950 2.92170 3.19823 3.50521 3.69111 3.79745 4.01052 4.12458 4.15077 4.22634 4.26774 4.34909 4.45937 4.51709 4.56407 4.74132 4.77634 4.78407 4.91338 5.04891 5.11525 5.23769 5.30648 5.37221 5.39486 5.41209 5.66759 5.85449 6.05375 6.06311 6.37485 6.47141 6.58370 7.06669 7.11655 7.55719 8.10170 8.69855 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.007059 B = 0.003496 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3965.724811 B = 8008.159381 C =10525.011661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.156 4.156 3 C 0.083 3.917 4 H 0.114 0.886 5 C 0.125 3.875 6 N -0.704 5.704 7 C 0.585 3.415 8 O -0.568 6.568 9 C -0.050 4.050 10 C -0.109 4.109 11 C -0.179 4.179 12 C 0.085 3.915 13 Cl -0.004 7.004 14 N -0.523 5.523 15 H 0.429 0.571 16 N -0.665 5.665 17 C 0.063 3.937 18 C 0.440 3.560 19 O -0.618 6.618 20 N -0.576 5.576 21 C -0.332 4.332 22 H 0.080 0.920 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.040 0.960 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.410 0.590 37 H 0.162 0.838 38 H 0.177 0.823 39 H 0.353 0.647 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.394 0.606 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.487 4.864 18.884 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.196 4.196 3 C -0.027 4.027 4 H 0.132 0.868 5 C 0.001 3.999 6 N -0.354 5.354 7 C 0.373 3.627 8 O -0.448 6.448 9 C -0.164 4.164 10 C -0.135 4.135 11 C -0.204 4.204 12 C -0.059 4.059 13 Cl 0.024 6.976 14 N -0.124 5.124 15 H 0.269 0.731 16 N -0.298 5.298 17 C -0.070 4.070 18 C 0.227 3.773 19 O -0.504 6.504 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.814 3.186 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.195 1.195 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.246 0.754 37 H 0.179 0.821 38 H 0.194 0.806 39 H 0.173 0.827 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.227 0.773 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.972 5.347 18.863 19.830 hybrid contribution -1.275 -0.398 -1.339 1.892 sum 1.697 4.950 17.524 18.288 Atomic orbital electron populations 1.21746 0.94844 1.02352 1.01925 1.22163 0.96988 0.96811 1.03597 1.21976 0.93257 0.94685 0.92823 0.86831 1.21550 0.93643 0.82397 1.02261 1.45677 1.06223 1.11048 1.72464 1.17122 0.82655 0.86415 0.76490 1.90821 1.56857 1.45048 1.52113 1.20415 0.92382 0.85831 1.17758 1.21514 0.94786 0.95120 1.02119 1.20960 0.95097 0.94827 1.09564 1.21259 0.90913 0.82576 1.11123 1.98416 1.91705 1.11768 1.95694 1.42019 1.10066 1.04765 1.55524 0.73116 1.60158 1.19528 1.50314 0.99808 1.21515 1.01607 0.95233 0.88619 1.20857 0.83374 0.87650 0.85392 1.90481 1.47156 1.25438 1.87311 1.41958 1.52224 1.21886 1.05194 1.19651 1.36781 1.04829 0.84898 0.90191 1.26025 0.96199 0.97200 1.01845 1.69672 1.39732 1.19457 1.27388 0.84960 0.78702 0.77868 0.77024 1.19852 1.19589 1.19534 0.94088 0.91943 0.91132 0.92138 0.89248 0.92709 0.89494 0.75392 0.82068 0.80582 0.82679 0.89195 0.91454 0.77315 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.70 71.98 0.70 -1.66 16 2 C -0.16 -2.49 5.10 30.59 0.16 -2.33 16 3 C 0.08 1.48 2.70 44.92 0.12 1.60 16 4 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 5 C 0.13 2.65 4.76 86.38 0.41 3.06 16 6 N -0.70 -16.37 5.38 -467.20 -2.52 -18.88 16 7 C 0.59 16.41 7.78 86.41 0.67 17.09 16 8 O -0.57 -19.49 16.88 -4.38 -0.07 -19.57 16 9 C -0.05 -1.26 7.06 40.30 0.28 -0.98 16 10 C -0.11 -2.54 10.65 22.56 0.24 -2.30 16 11 C -0.18 -3.58 10.78 22.04 0.24 -3.35 16 12 C 0.08 1.76 7.74 83.52 0.65 2.40 16 13 Cl 0.00 -0.08 29.30 -2.72 -0.08 -0.16 16 14 N -0.52 -11.14 6.00 -174.61 -1.05 -12.19 16 15 H 0.43 7.75 8.19 -92.71 -0.76 6.99 16 16 N -0.67 -17.00 5.32 -495.58 -2.64 -19.64 16 17 C 0.06 2.01 5.31 85.56 0.45 2.46 16 18 C 0.44 20.11 7.83 87.66 0.69 20.80 16 19 O -0.62 -32.31 15.90 -3.09 -0.05 -32.36 16 20 N -0.58 -29.29 5.29 -306.98 -1.62 -30.92 16 21 C -0.33 -18.74 9.68 84.04 0.81 -17.92 16 22 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 23 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 24 N -0.92 -50.14 13.05 21.66 0.28 -49.86 16 25 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 29 H 0.04 0.78 6.87 -2.39 -0.02 0.76 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.06 1.14 6.23 -2.39 -0.01 1.12 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.05 1.37 6.61 -2.39 -0.02 1.36 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.41 8.67 7.27 -92.71 -0.67 7.99 16 37 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 38 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 39 H 0.35 9.32 7.28 -89.70 -0.65 8.67 16 40 H 0.09 2.88 6.22 -2.39 -0.01 2.86 16 41 H 0.07 1.94 6.48 -2.39 -0.02 1.93 16 42 H 0.39 19.40 7.90 -92.71 -0.73 18.66 16 43 H 0.28 14.15 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -70.08 377.94 -1.53 -71.61 By element: Atomic # 1 Polarization: 50.02 SS G_CDS: -1.71 Total: 48.31 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 5.89 Total: 18.63 kcal Atomic # 7 Polarization: -123.95 SS G_CDS: -7.54 Total: -131.49 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -0.12 Total: -51.92 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -0.08 Total: -0.16 kcal Total: -70.08 -1.53 -71.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318571231.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.297 kcal (2) G-P(sol) polarization free energy of solvation -70.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds