Wall clock time and date at job start Wed Apr 1 2020 00:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30289 * 126.35178 * 2 1 4 4 N 1.28531 * 110.05563 * 180.02562 * 3 2 1 5 5 C 1.31217 * 109.85691 * 359.97438 * 4 3 2 6 6 N 1.38585 * 126.46833 * 179.97438 * 5 4 3 7 7 C 1.46901 * 110.99919 * 111.95127 * 6 5 4 8 8 C 1.46899 * 111.00046 * 347.99437 * 6 5 4 9 9 H 1.08999 * 109.47240 * 309.99700 * 8 6 5 10 10 C 1.53002 * 109.47200 * 70.00128 * 8 6 5 11 11 C 1.50699 * 109.46855 * 189.99965 * 8 6 5 12 12 H 1.08003 * 120.00038 * 0.02562 * 11 8 6 13 13 C 1.37882 * 120.00035 * 179.97438 * 11 8 6 14 14 N 1.31510 * 119.99680 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 119.99919 * 179.97438 * 13 11 8 16 16 H 1.48504 * 109.46851 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.47360 * 300.00027 * 15 13 11 18 18 H 1.48504 * 109.47194 * 60.00434 * 15 13 11 19 19 N 1.36446 * 107.05810 * 0.22548 * 5 4 3 20 20 C 1.46500 * 127.13905 * 179.77221 * 19 5 4 21 21 C 1.52991 * 109.47231 * 275.11037 * 20 19 5 22 22 H 1.09001 * 109.38518 * 54.72910 * 21 20 19 23 23 C 1.52638 * 109.38455 * 174.51661 * 21 20 19 24 24 S 1.81181 * 109.99479 * 187.01332 * 23 21 20 25 25 C 1.81172 * 103.31045 * 297.38148 * 24 23 21 26 26 C 1.52647 * 109.99381 * 62.61666 * 25 24 23 27 27 S 1.81174 * 109.38916 * 294.94375 * 21 20 19 28 28 H 1.08997 * 109.46566 * 89.97566 * 1 2 3 29 29 H 1.08993 * 109.47716 * 209.97793 * 1 2 3 30 30 H 1.08998 * 109.46552 * 329.98427 * 1 2 3 31 31 H 1.09002 * 109.46489 * 293.65913 * 7 6 5 32 32 H 1.09006 * 109.47276 * 53.65488 * 7 6 5 33 33 H 1.08999 * 109.47162 * 173.65800 * 7 6 5 34 34 H 1.08998 * 109.46949 * 300.00054 * 10 8 6 35 35 H 1.09004 * 109.46968 * 59.99905 * 10 8 6 36 36 H 1.09000 * 109.46738 * 179.97438 * 10 8 6 37 37 H 0.97001 * 119.99914 * 179.97438 * 14 13 11 38 38 H 1.08999 * 109.46954 * 35.11444 * 20 19 5 39 39 H 1.09008 * 109.46885 * 155.11033 * 20 19 5 40 40 H 1.08999 * 109.38339 * 307.17091 * 23 21 20 41 41 H 1.08996 * 109.38478 * 66.85032 * 23 21 20 42 42 H 1.08998 * 109.38549 * 182.76928 * 25 24 23 43 43 H 1.08991 * 109.39027 * 302.56283 * 25 24 23 44 44 H 1.09008 * 109.38031 * 53.30445 * 26 25 24 45 45 H 1.08997 * 109.38529 * 173.09313 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0493 0.0000 4 7 3.5130 0.6887 -0.0005 5 6 3.5945 -0.6210 -0.0004 6 7 4.7580 -1.3739 -0.0013 7 6 4.9226 -2.0900 1.2707 8 6 5.9284 -0.5337 -0.2878 9 1 5.7363 0.0658 -1.1776 10 6 6.1965 0.3903 0.9018 11 6 7.1309 -1.4111 -0.5233 12 1 7.0350 -2.4853 -0.4663 13 6 8.3532 -0.8424 -0.8126 14 7 8.4697 0.4656 -0.8826 15 14 9.8438 -1.9299 -1.1038 16 1 11.0271 -1.0807 -1.3936 17 1 10.1058 -2.7459 0.1089 18 1 9.5837 -2.8277 -2.2579 19 7 2.3174 -1.1015 -0.0048 20 6 1.9009 -2.5060 -0.0110 21 6 1.8820 -3.0260 -1.4497 22 1 2.8554 -2.8546 -1.9092 23 6 1.5811 -4.5224 -1.4436 24 16 1.7575 -5.1966 -3.1160 25 6 0.4869 -4.3132 -4.0581 26 6 0.7877 -2.8167 -4.0642 27 16 0.6093 -2.1448 -2.3911 28 1 -0.3632 0.0004 -1.0277 29 1 -0.3634 -0.8901 0.5134 30 1 -0.3632 0.8899 0.5141 31 1 5.0848 -1.3712 2.0739 32 1 4.0244 -2.6714 1.4793 33 1 5.7806 -2.7588 1.2027 34 1 5.3268 1.0248 1.0722 35 1 6.3887 -0.2093 1.7916 36 1 7.0653 1.0133 0.6893 37 1 9.3297 0.8657 -1.0857 38 1 2.6023 -3.0956 0.5793 39 1 0.9029 -2.5908 0.4192 40 1 2.2767 -5.0286 -0.7743 41 1 0.5617 -4.6850 -1.0936 42 1 0.4734 -4.6836 -5.0831 43 1 -0.4871 -4.4828 -3.5993 44 1 1.8072 -2.6541 -4.4142 45 1 0.0909 -2.3103 -4.7321 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417468527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:01 Heat of formation + Delta-G solvation = 83.711314 kcal Electronic energy + Delta-G solvation = -26781.230990 eV Core-core repulsion = 23280.719552 eV Total energy + Delta-G solvation = -3500.511438 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.124 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.89072 -39.05658 -37.45263 -34.90114 -34.64151 -33.45181 -32.59720 -30.60646 -28.88002 -27.88674 -27.29739 -26.48847 -24.89784 -23.71727 -23.31362 -21.66043 -21.14455 -18.69122 -18.22956 -17.83523 -17.40458 -17.27568 -17.03936 -16.50081 -16.37425 -15.63045 -15.34179 -15.12731 -15.01450 -14.81293 -14.58247 -14.36448 -14.33692 -14.01844 -13.75388 -13.57823 -13.40392 -13.24585 -12.97158 -12.93484 -12.72768 -12.63847 -12.42061 -12.25593 -12.13677 -11.99943 -11.96453 -11.38247 -11.28401 -11.05087 -10.90265 -10.67583 -10.49689 -10.37076 -9.02364 -9.01096 -8.73180 -8.11208 -6.26246 0.41398 0.58064 0.89501 1.25673 1.31982 1.44306 1.46569 1.52570 1.55056 1.98718 2.41829 3.00907 3.18155 3.38704 3.50461 3.58017 3.62826 3.67288 3.92342 3.97035 4.02953 4.15444 4.23325 4.27418 4.46350 4.52248 4.56823 4.59692 4.65246 4.69119 4.71458 4.76372 4.91712 4.99096 5.02818 5.10293 5.12699 5.21991 5.48956 5.63241 5.66506 5.89791 6.11074 6.23054 6.62604 6.83208 7.42623 7.94911 8.95100 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.011047 B = 0.004269 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.105073 B = 6557.931116 C = 8185.823986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.191 3.809 3 N -0.342 5.342 4 N -0.366 5.366 5 C 0.365 3.635 6 N -0.455 5.455 7 C 0.036 3.964 8 C 0.245 3.755 9 H -0.005 1.005 10 C -0.155 4.155 11 C -0.521 4.521 12 H 0.069 0.931 13 C 0.012 3.988 14 N -0.920 5.920 15 Si 0.967 3.033 16 H -0.288 1.288 17 H -0.264 1.264 18 H -0.272 1.272 19 N -0.474 5.474 20 C 0.130 3.870 21 C -0.066 4.066 22 H 0.074 0.926 23 C -0.066 4.066 24 S -0.290 6.290 25 C -0.073 4.073 26 C -0.091 4.091 27 S -0.246 6.246 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.028 0.972 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.035 0.965 35 H 0.034 0.966 36 H 0.059 0.941 37 H 0.262 0.738 38 H 0.122 0.878 39 H 0.139 0.861 40 H 0.130 0.870 41 H 0.125 0.875 42 H 0.131 0.869 43 H 0.113 0.887 44 H 0.075 0.925 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.152 -13.960 -0.259 26.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.078 4.078 3 N -0.180 5.180 4 N -0.209 5.209 5 C 0.007 3.993 6 N -0.178 5.178 7 C -0.111 4.111 8 C 0.139 3.861 9 H 0.013 0.987 10 C -0.214 4.214 11 C -0.559 4.559 12 H 0.087 0.913 13 C -0.187 4.187 14 N -0.559 5.559 15 Si 0.792 3.208 16 H -0.214 1.214 17 H -0.188 1.188 18 H -0.197 1.197 19 N -0.170 5.170 20 C 0.005 3.995 21 C -0.198 4.198 22 H 0.093 0.907 23 C -0.217 4.217 24 S -0.062 6.062 25 C -0.223 4.223 26 C -0.241 4.241 27 S -0.018 6.018 28 H 0.111 0.889 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.140 0.860 39 H 0.157 0.843 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.149 0.851 43 H 0.132 0.868 44 H 0.094 0.906 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -21.618 -12.753 -0.699 25.109 hybrid contribution 1.290 -0.585 -0.090 1.419 sum -20.328 -13.338 -0.789 24.326 Atomic orbital electron populations 1.20372 0.80572 1.05565 1.04779 1.25433 0.97775 0.81566 1.03033 1.73860 0.96844 1.26386 1.20946 1.74693 1.12307 1.09332 1.24532 1.23045 0.85876 0.89239 1.01137 1.59254 0.99260 1.26931 1.32363 1.22478 1.03378 0.97827 0.87430 1.18852 0.84725 0.89572 0.92964 0.98660 1.22205 1.01004 1.00045 0.98139 1.21253 0.92796 0.93384 1.48466 0.91253 1.25768 1.01805 0.96205 0.94913 1.70082 1.25566 1.11106 1.49100 0.85480 0.77970 0.78368 0.79002 1.21372 1.18828 1.19749 1.46215 1.04427 1.08853 1.57522 1.22022 1.05072 0.77344 0.95053 1.23683 1.00503 0.97457 0.98187 0.90722 1.23486 1.08466 0.93590 0.96112 1.87244 1.51966 1.57476 1.09479 1.23557 0.99922 0.94472 1.04324 1.23623 1.06292 0.98059 0.96102 1.86714 1.46642 1.60125 1.08288 0.88860 0.87817 0.88275 0.95369 0.89625 0.89337 0.94638 0.94715 0.92190 0.92904 0.86033 0.84292 0.85166 0.85686 0.85130 0.86820 0.90638 0.84663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.00 9.43 71.24 0.67 -0.33 16 2 C 0.19 5.92 7.47 137.64 1.03 6.95 16 3 N -0.34 -14.46 12.18 -49.53 -0.60 -15.07 16 4 N -0.37 -17.65 9.33 -58.01 -0.54 -18.19 16 5 C 0.36 15.14 6.67 260.11 1.74 16.88 16 6 N -0.45 -19.59 4.74 -710.99 -3.37 -22.95 16 7 C 0.04 1.24 8.72 127.69 1.11 2.36 16 8 C 0.24 13.11 2.01 44.17 0.09 13.19 16 9 H 0.00 -0.29 7.94 -2.39 -0.02 -0.31 16 10 C -0.15 -8.24 8.18 71.98 0.59 -7.66 16 11 C -0.52 -28.42 8.00 25.60 0.20 -28.21 16 12 H 0.07 3.60 7.10 -2.91 -0.02 3.58 16 13 C 0.01 0.69 5.30 84.66 0.45 1.13 16 14 N -0.92 -54.81 11.32 21.45 0.24 -54.56 16 15 Si 0.97 43.48 29.54 68.60 2.03 45.51 16 16 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 17 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 N -0.47 -14.35 2.62 -514.86 -1.35 -15.70 16 20 C 0.13 2.47 5.32 86.38 0.46 2.93 16 21 C -0.07 -1.34 2.61 30.47 0.08 -1.26 16 22 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 23 C -0.07 -0.95 5.53 71.86 0.40 -0.55 16 24 S -0.29 -5.35 22.05 -56.49 -1.25 -6.60 16 25 C -0.07 -0.94 6.25 71.86 0.45 -0.49 16 26 C -0.09 -1.49 6.26 71.86 0.45 -1.04 16 27 S -0.25 -4.73 18.75 -56.49 -1.06 -5.79 16 28 H 0.09 1.69 7.13 -2.39 -0.02 1.68 16 29 H 0.10 1.21 7.19 -2.39 -0.02 1.19 16 30 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.03 1.05 6.07 -2.39 -0.01 1.04 16 32 H 0.09 2.20 5.61 -2.38 -0.01 2.19 16 33 H 0.09 3.13 6.93 -2.39 -0.02 3.11 16 34 H 0.03 1.89 5.93 -2.39 -0.01 1.88 16 35 H 0.03 1.71 6.27 -2.39 -0.01 1.69 16 36 H 0.06 3.54 6.07 -2.39 -0.01 3.52 16 37 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 38 H 0.12 2.07 5.70 -2.39 -0.01 2.05 16 39 H 0.14 1.58 7.11 -2.38 -0.02 1.56 16 40 H 0.13 1.63 8.12 -2.39 -0.02 1.61 16 41 H 0.12 1.17 8.14 -2.40 -0.02 1.15 16 42 H 0.13 1.31 8.14 -2.40 -0.02 1.29 16 43 H 0.11 1.11 8.14 -2.40 -0.02 1.09 16 44 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.14 1.68 8.14 -2.40 -0.02 1.66 16 Total: -1.00 -76.66 366.08 2.82 -73.84 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 1.00 Total: 15.59 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 7.72 Total: 3.91 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -5.62 Total: -126.47 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -10.08 SS G_CDS: -2.31 Total: -12.38 kcal Total: -76.66 2.82 -73.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417468527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.552 kcal (2) G-P(sol) polarization free energy of solvation -76.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds