Wall clock time and date at job start Wed Apr 1 2020 00:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30294 * 126.34766 * 2 1 4 4 N 1.28525 * 110.05344 * 179.97438 * 3 2 1 5 5 C 1.31220 * 109.86214 * 359.97438 * 4 3 2 6 6 N 1.38583 * 126.47416 * 179.97438 * 5 4 3 7 7 C 1.46898 * 110.99661 * 70.78324 * 6 5 4 8 8 C 1.46897 * 110.99981 * 306.83350 * 6 5 4 9 9 H 1.08996 * 109.47704 * 59.99907 * 8 6 5 10 10 C 1.53007 * 109.46918 * 299.99456 * 8 6 5 11 11 C 1.50698 * 109.46944 * 180.02562 * 8 6 5 12 12 H 1.07998 * 120.00703 * 34.30526 * 11 8 6 13 13 C 1.37885 * 120.00111 * 214.30132 * 11 8 6 14 14 N 1.31509 * 120.00151 * 183.58403 * 13 11 8 15 15 Si 1.86802 * 119.99488 * 3.58840 * 13 11 8 16 16 H 1.48497 * 109.47085 * 93.30096 * 15 13 11 17 17 H 1.48505 * 109.46976 * 213.29771 * 15 13 11 18 18 H 1.48492 * 109.47393 * 333.29906 * 15 13 11 19 19 N 1.36454 * 107.05359 * 359.97438 * 5 4 3 20 20 C 1.46498 * 127.13590 * 179.97438 * 19 5 4 21 21 C 1.52996 * 109.47603 * 275.66196 * 20 19 5 22 22 H 1.09000 * 109.38510 * 55.20951 * 21 20 19 23 23 C 1.52636 * 109.38685 * 175.00283 * 21 20 19 24 24 S 1.81169 * 109.99451 * 187.01192 * 23 21 20 25 25 C 1.81177 * 103.31175 * 297.38113 * 24 23 21 26 26 C 1.52641 * 109.99351 * 62.61806 * 25 24 23 27 27 S 1.81175 * 109.38175 * 295.53479 * 21 20 19 28 28 H 1.08994 * 109.47603 * 90.02583 * 1 2 3 29 29 H 1.09008 * 109.47005 * 210.02444 * 1 2 3 30 30 H 1.08999 * 109.47111 * 330.01965 * 1 2 3 31 31 H 1.08996 * 109.47558 * 63.49091 * 7 6 5 32 32 H 1.09008 * 109.47039 * 183.48832 * 7 6 5 33 33 H 1.09000 * 109.47354 * 303.48442 * 7 6 5 34 34 H 1.08996 * 109.47168 * 295.60801 * 10 8 6 35 35 H 1.09001 * 109.46610 * 55.61009 * 10 8 6 36 36 H 1.08997 * 109.46980 * 175.60658 * 10 8 6 37 37 H 0.97000 * 119.99729 * 180.02562 * 14 13 11 38 38 H 1.08999 * 109.46884 * 35.66819 * 20 19 5 39 39 H 1.09004 * 109.46603 * 155.66217 * 20 19 5 40 40 H 1.09001 * 109.37748 * 307.17122 * 23 21 20 41 41 H 1.08998 * 109.38454 * 66.84846 * 23 21 20 42 42 H 1.08999 * 109.38307 * 182.77235 * 25 24 23 43 43 H 1.08996 * 109.38425 * 302.56343 * 25 24 23 44 44 H 1.08998 * 109.38418 * 53.30723 * 26 25 24 45 45 H 1.08997 * 109.38729 * 173.10016 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5129 0.6888 0.0005 5 6 3.5945 -0.6208 0.0015 6 7 4.7580 -1.3737 0.0018 7 6 5.4454 -1.2797 1.2966 8 6 5.6464 -0.9702 -1.0964 9 1 5.9104 0.0811 -0.9826 10 6 4.9302 -1.1746 -2.4330 11 6 6.8978 -1.8093 -1.0642 12 1 6.8481 -2.8414 -0.7500 13 6 8.1063 -1.2594 -1.4359 14 7 9.1857 -2.0096 -1.4756 15 14 8.2103 0.5514 -1.8831 16 1 8.5845 1.3375 -0.6801 17 1 9.2374 0.7424 -2.9385 18 1 6.8918 1.0136 -2.3860 19 7 2.3174 -1.1014 0.0021 20 6 1.9010 -2.5060 0.0027 21 6 1.8919 -3.0359 -1.4326 22 1 2.8710 -2.8753 -1.8837 23 6 1.5791 -4.5298 -1.4191 24 16 1.7663 -5.2170 -3.0849 25 6 0.5119 -4.3302 -4.0454 26 6 0.8246 -2.8362 -4.0590 27 16 0.6375 -2.1490 -2.3930 28 1 -0.3634 -0.0005 -1.0276 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 4.8137 -1.7071 2.0752 32 1 6.3858 -1.8291 1.2494 33 1 5.6471 -0.2334 1.5258 34 1 4.7358 -2.2366 -2.5823 35 1 3.9862 -0.6296 -2.4263 36 1 5.5586 -0.8029 -3.2423 37 1 10.0359 -1.6226 -1.7368 38 1 2.5984 -3.0914 0.6018 39 1 0.9001 -2.5879 0.4266 40 1 2.2642 -5.0366 -0.7395 41 1 0.5551 -4.6820 -1.0779 42 1 0.5054 -4.7077 -5.0679 43 1 -0.4678 -4.4890 -3.5949 44 1 1.8486 -2.6841 -4.4001 45 1 0.1383 -2.3290 -4.7370 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417468528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:13 Heat of formation + Delta-G solvation = 92.124607 kcal Electronic energy + Delta-G solvation = -27172.481137 eV Core-core repulsion = 23672.334526 eV Total energy + Delta-G solvation = -3500.146610 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.58718 -37.19651 -36.36836 -33.80310 -32.83072 -32.51866 -31.40887 -30.13158 -27.43860 -26.88226 -25.45856 -24.45012 -24.18332 -22.76598 -21.69409 -20.51307 -19.39331 -17.71551 -17.14303 -16.87092 -16.34996 -16.09788 -15.65100 -15.05555 -14.80487 -14.42684 -14.41082 -14.01595 -13.89005 -13.57371 -13.56265 -13.17207 -13.07631 -12.86703 -12.65222 -12.52600 -12.51329 -12.12216 -11.79845 -11.52336 -11.24311 -11.16582 -11.03188 -10.77435 -10.61957 -10.49671 -10.42911 -10.08403 -9.99648 -9.81822 -9.75343 -9.29566 -8.67967 -8.46866 -8.18243 -7.89660 -7.82935 -6.18370 -4.19441 1.22278 1.34589 1.97223 2.15131 2.23371 2.58561 3.26986 3.29319 3.36220 3.44512 4.16096 4.30045 4.35869 4.41691 4.49036 4.54883 4.63523 4.64643 4.74496 4.91810 5.01696 5.17602 5.19606 5.21477 5.23926 5.42014 5.48751 5.56923 5.66232 5.78546 5.93970 6.14168 6.25311 6.31933 6.37467 6.48628 6.57878 6.75783 6.90236 7.00043 7.20263 7.40971 7.68390 8.01095 8.50212 8.88423 9.19832 9.44102 10.93085 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.011199 B = 0.004894 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.613856 B = 5719.513118 C = 7055.793090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.174 3.826 3 N -0.294 5.294 4 N -0.321 5.321 5 C 0.376 3.624 6 N -0.467 5.467 7 C 0.046 3.954 8 C 0.191 3.809 9 H 0.026 0.974 10 C -0.129 4.129 11 C -0.507 4.507 12 H 0.083 0.917 13 C 0.080 3.920 14 N -0.890 5.890 15 Si 0.865 3.135 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.260 1.260 19 N -0.470 5.470 20 C 0.143 3.857 21 C -0.077 4.077 22 H 0.123 0.877 23 C -0.082 4.082 24 S -0.234 6.234 25 C -0.091 4.091 26 C -0.093 4.093 27 S -0.237 6.237 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.103 0.897 33 H 0.029 0.971 34 H 0.050 0.950 35 H 0.020 0.980 36 H 0.051 0.949 37 H 0.266 0.734 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.122 0.878 41 H 0.097 0.903 42 H 0.115 0.885 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.176 -5.616 -0.212 21.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.093 4.093 3 N -0.134 5.134 4 N -0.163 5.163 5 C 0.020 3.980 6 N -0.194 5.194 7 C -0.101 4.101 8 C 0.086 3.914 9 H 0.044 0.956 10 C -0.188 4.188 11 C -0.546 4.546 12 H 0.101 0.899 13 C -0.124 4.124 14 N -0.527 5.527 15 Si 0.692 3.308 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.184 1.184 19 N -0.165 5.165 20 C 0.015 3.985 21 C -0.209 4.209 22 H 0.141 0.859 23 C -0.233 4.233 24 S -0.005 6.005 25 C -0.241 4.241 26 C -0.244 4.244 27 S -0.009 6.009 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.121 0.879 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.133 0.867 39 H 0.115 0.885 40 H 0.141 0.859 41 H 0.115 0.885 42 H 0.134 0.866 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -20.653 -4.671 -0.362 21.178 hybrid contribution 0.098 0.266 -0.346 0.448 sum -20.555 -4.406 -0.709 21.034 Atomic orbital electron populations 1.20132 0.84438 1.03380 1.03807 1.24563 0.96206 0.82669 1.05908 1.73958 0.96795 1.24158 1.18510 1.74663 1.11533 1.08906 1.21189 1.22904 0.86089 0.88484 1.00485 1.59309 1.02579 1.50569 1.06974 1.22252 0.99945 1.00781 0.87115 1.19869 0.90461 0.96005 0.85059 0.95613 1.21938 0.97784 1.00137 0.98925 1.20759 0.89000 0.99003 1.45824 0.89872 1.24920 0.95483 0.97475 0.94480 1.69873 0.99674 1.35851 1.47262 0.87011 0.78498 0.86257 0.79065 1.19971 1.21177 1.18416 1.46263 1.06677 1.07240 1.56308 1.21483 1.02579 0.79663 0.94727 1.23929 1.02864 0.95649 0.98422 0.85866 1.23505 1.06532 0.95804 0.97411 1.87098 1.50701 1.55738 1.06972 1.23558 1.00622 0.96182 1.03750 1.23574 1.07055 0.96800 0.96924 1.86730 1.49020 1.58102 1.07073 0.89471 0.91175 0.89317 0.93611 0.87876 0.95186 0.93144 0.96149 0.92993 0.92387 0.86700 0.88467 0.85947 0.88467 0.86650 0.88680 0.88289 0.86708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 9.46 36.01 0.34 -0.27 16 2 C 0.17 2.70 7.45 -154.01 -1.15 1.55 16 3 N -0.29 -5.80 12.18 32.99 0.40 -5.40 16 4 N -0.32 -7.03 11.98 30.32 0.36 -6.67 16 5 C 0.38 7.34 5.04 -318.87 -1.61 5.73 16 6 N -0.47 -9.57 4.66 -176.08 -0.82 -10.39 16 7 C 0.05 0.90 9.34 60.06 0.56 1.46 16 8 C 0.19 4.51 1.55 -68.86 -0.11 4.40 16 9 H 0.03 0.67 5.07 -51.93 -0.26 0.41 16 10 C -0.13 -2.86 8.74 37.16 0.32 -2.54 16 11 C -0.51 -13.41 7.35 -34.44 -0.25 -13.66 16 12 H 0.08 2.37 8.05 -52.49 -0.42 1.95 16 13 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 14 N -0.89 -25.98 13.96 55.43 0.77 -25.20 16 15 Si 0.86 21.58 27.09 -169.99 -4.60 16.98 16 16 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.26 -6.50 6.50 56.52 0.37 -6.13 16 19 N -0.47 -7.24 2.61 -114.08 -0.30 -7.54 16 20 C 0.14 1.60 5.45 -4.04 -0.02 1.58 16 21 C -0.08 -0.88 2.61 -26.92 -0.07 -0.95 16 22 H 0.12 1.87 6.69 -51.91 -0.35 1.52 16 23 C -0.08 -0.75 5.53 36.97 0.20 -0.55 16 24 S -0.23 -2.49 22.05 -107.50 -2.37 -4.86 16 25 C -0.09 -0.73 6.25 36.97 0.23 -0.50 16 26 C -0.09 -0.87 6.25 36.97 0.23 -0.64 16 27 S -0.24 -2.56 18.81 -107.50 -2.02 -4.59 16 28 H 0.09 0.89 7.18 -51.93 -0.37 0.52 16 29 H 0.07 0.57 7.18 -51.92 -0.37 0.19 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 2.14 6.70 -51.92 -0.35 1.80 16 33 H 0.03 0.61 8.13 -51.93 -0.42 0.19 16 34 H 0.05 1.07 7.13 -51.93 -0.37 0.70 16 35 H 0.02 0.43 7.07 -51.93 -0.37 0.07 16 36 H 0.05 1.17 8.01 -51.93 -0.42 0.76 16 37 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.11 1.25 8.13 -51.93 -0.42 0.83 16 39 H 0.10 0.81 7.10 -51.93 -0.37 0.44 16 40 H 0.12 1.06 8.13 -51.92 -0.42 0.64 16 41 H 0.10 0.72 8.14 -51.92 -0.42 0.29 16 42 H 0.12 0.78 8.14 -51.92 -0.42 0.35 16 43 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 44 H 0.10 1.09 8.14 -51.92 -0.42 0.67 16 45 H 0.11 0.87 8.14 -51.92 -0.42 0.45 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -32.31 374.39 -11.39 -43.70 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.04 Total: 0.59 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -1.41 Total: -2.26 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 0.42 Total: -55.20 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.60 Total: 16.98 kcal Atomic # 16 Polarization: -5.05 SS G_CDS: -4.39 Total: -9.45 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.31 -11.39 -43.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417468528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.824 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds