Wall clock time and date at job start Wed Apr 1 2020 00:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46992 * 2 1 4 4 C 1.52995 * 109.47550 * 120.00068 * 2 1 3 5 5 H 1.08992 * 109.47370 * 184.99964 * 4 2 1 6 6 C 1.53004 * 109.47195 * 305.00003 * 4 2 1 7 7 N 1.46499 * 109.47198 * 174.99817 * 6 4 2 8 8 C 1.34777 * 119.99665 * 180.27868 * 7 6 4 9 9 O 1.21283 * 119.99990 * 359.71991 * 8 7 6 10 10 C 1.50698 * 119.99538 * 179.72653 * 8 7 6 11 11 C 1.50698 * 109.46944 * 179.97438 * 10 8 7 12 12 C 1.38243 * 120.00814 * 264.72200 * 11 10 8 13 13 C 1.38216 * 120.05108 * 179.76836 * 12 11 10 14 14 C 1.38266 * 120.06291 * 0.50723 * 13 12 11 15 15 C 1.38275 * 120.00584 * 359.74610 * 14 13 12 16 16 Cl 1.73604 * 120.01910 * 179.97438 * 15 14 13 17 17 C 1.38405 * 120.00767 * 84.99648 * 11 10 8 18 18 F 1.35102 * 120.03203 * 359.95844 * 17 11 10 19 19 N 1.46506 * 109.47091 * 64.99809 * 4 2 1 20 20 C 1.36929 * 119.99909 * 85.00050 * 19 4 2 21 21 H 1.08006 * 120.00094 * 0.02562 * 20 19 4 22 22 C 1.38816 * 120.00176 * 180.02562 * 20 19 4 23 23 N 1.31615 * 119.99668 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00011 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47137 * 90.00133 * 24 22 20 26 26 H 1.48503 * 109.46884 * 210.00261 * 24 22 20 27 27 H 1.48502 * 109.47201 * 329.99762 * 24 22 20 28 28 H 1.09003 * 109.46956 * 299.99425 * 1 2 3 29 29 H 1.09003 * 109.47409 * 59.99751 * 1 2 3 30 30 H 1.09001 * 109.47009 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46956 * 240.00575 * 2 1 3 32 32 H 1.08996 * 109.47018 * 60.00202 * 3 2 1 33 33 H 1.09003 * 109.47231 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47247 * 300.00348 * 3 2 1 35 35 H 1.09009 * 109.46730 * 54.99604 * 6 4 2 36 36 H 1.08998 * 109.46846 * 295.00148 * 6 4 2 37 37 H 0.97001 * 119.99790 * 359.97438 * 7 6 4 38 38 H 1.09003 * 109.47112 * 299.99065 * 10 8 7 39 39 H 1.08993 * 109.47916 * 59.99687 * 10 8 7 40 40 H 1.08001 * 119.97185 * 359.97438 * 12 11 10 41 41 H 1.08003 * 119.97403 * 180.25241 * 13 12 11 42 42 H 1.07996 * 119.99368 * 179.76893 * 14 13 12 43 43 H 0.97002 * 119.99781 * 265.00262 * 19 4 2 44 44 H 0.96996 * 119.99816 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1263 -0.6443 1.2950 6 6 1.4301 -0.0763 2.4953 7 7 1.8229 -0.8397 3.6823 8 6 1.3947 -0.4572 4.9017 9 8 0.6884 0.5220 5.0167 10 6 1.7938 -1.2461 6.1221 11 6 1.1889 -0.6137 7.3489 12 6 1.9265 0.2825 8.0999 13 6 1.3710 0.8667 9.2226 14 6 0.0803 0.5479 9.6025 15 6 -0.6579 -0.3521 8.8562 16 17 -2.2782 -0.7532 9.3333 17 6 -0.1032 -0.9343 7.7274 18 9 -0.8233 -1.8136 6.9969 19 7 1.6525 -2.1329 1.1905 20 6 2.4346 -3.0300 0.5134 21 1 3.3374 -2.6970 0.0228 22 6 2.0671 -4.3675 0.4573 23 7 0.9667 -4.7731 1.0546 24 14 3.1344 -5.5914 -0.4659 25 1 4.1442 -6.1645 0.4598 26 1 2.2831 -6.6815 -1.0063 27 1 3.8243 -4.9011 -1.5852 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 0.3435 -0.0736 2.4081 36 1 1.7897 0.9486 2.5870 37 1 2.3875 -1.6230 3.5902 38 1 1.4339 -2.2705 6.0261 39 1 2.8798 -1.2495 6.2135 40 1 2.9365 0.5288 7.8071 41 1 1.9469 1.5698 9.8060 42 1 -0.3513 1.0022 10.4821 43 1 0.8419 -2.4319 1.6314 44 1 0.7101 -5.7077 1.0158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482556749.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:23 Heat of formation + Delta-G solvation = -66.050607 kcal Electronic energy + Delta-G solvation = -27487.422725 eV Core-core repulsion = 23379.867489 eV Total energy + Delta-G solvation = -4107.555236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.98607 -39.91109 -38.89644 -37.32825 -36.70452 -33.73638 -33.26749 -33.01408 -30.62049 -30.42669 -28.56489 -26.73411 -26.66086 -23.90189 -23.03574 -22.62421 -22.06581 -20.11714 -18.69045 -17.84293 -17.39018 -16.94693 -16.74369 -16.45815 -15.79848 -15.63873 -15.17842 -14.71532 -14.59249 -14.15095 -13.81632 -13.66074 -13.47267 -13.42451 -13.19544 -13.13334 -12.87968 -12.84114 -12.42366 -12.07320 -11.79089 -11.65481 -11.60572 -11.42250 -11.12306 -11.08097 -11.01226 -10.90280 -10.65605 -10.36188 -10.21392 -9.82865 -9.69270 -9.67222 -9.03027 -8.94690 -8.84604 -8.60161 -7.05106 -5.83853 -3.13992 0.77647 0.85054 1.82112 2.89952 3.14078 3.37733 3.44201 3.45727 3.66046 3.94045 4.29293 4.52032 4.53143 4.80649 4.86825 5.05157 5.13609 5.30784 5.36586 5.37076 5.49100 5.53334 5.62373 5.66170 5.74484 5.75322 5.81478 5.90370 5.97461 6.06113 6.07813 6.16361 6.32131 6.37483 6.43956 6.47821 6.61349 6.71545 6.86717 6.99772 7.05445 7.63681 7.90458 8.33356 8.53839 9.45525 10.00250 10.36046 11.37780 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.012193 B = 0.002802 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.930636 B = 9988.839451 C =10963.277386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C -0.148 4.148 4 C 0.171 3.829 5 H 0.053 0.947 6 C 0.111 3.889 7 N -0.710 5.710 8 C 0.513 3.487 9 O -0.548 6.548 10 C -0.107 4.107 11 C -0.081 4.081 12 C -0.076 4.076 13 C -0.119 4.119 14 C -0.087 4.087 15 C -0.074 4.074 16 Cl -0.054 7.054 17 C 0.127 3.873 18 F -0.120 7.120 19 N -0.720 5.720 20 C -0.243 4.243 21 H 0.070 0.930 22 C -0.009 4.009 23 N -0.928 5.928 24 Si 0.905 3.095 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.283 1.283 28 H 0.047 0.953 29 H 0.039 0.961 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.410 0.590 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.386 0.614 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.934 11.609 15.788 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.206 4.206 4 C 0.060 3.940 5 H 0.071 0.929 6 C -0.014 4.014 7 N -0.362 5.362 8 C 0.298 3.702 9 O -0.426 6.426 10 C -0.147 4.147 11 C -0.082 4.082 12 C -0.094 4.094 13 C -0.137 4.137 14 C -0.106 4.106 15 C -0.102 4.102 16 Cl -0.025 7.025 17 C 0.106 3.894 18 F -0.098 7.098 19 N -0.362 5.362 20 C -0.374 4.374 21 H 0.088 0.912 22 C -0.205 4.205 23 N -0.576 5.576 24 Si 0.736 3.264 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.208 1.208 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.247 0.753 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.158 0.842 43 H 0.220 0.780 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.377 12.113 15.761 19.926 hybrid contribution 0.169 -1.465 -0.691 1.628 sum 1.546 10.648 15.071 18.517 Atomic orbital electron populations 1.21796 0.95823 1.02355 0.99940 1.21737 0.96046 0.94589 1.00967 1.21911 1.00486 0.97211 1.00955 1.20508 0.97081 0.85926 0.90476 0.92931 1.21831 1.00509 0.94548 0.84469 1.45970 1.52475 1.32032 1.05708 1.20236 0.80419 0.85044 0.84455 1.90691 1.37706 1.27654 1.86548 1.20641 1.02945 1.01012 0.90085 1.19365 0.92328 0.99296 0.97242 1.21022 1.00235 0.94190 0.93935 1.21102 0.94764 1.00453 0.97404 1.20939 0.94141 0.96054 0.99468 1.20950 0.88854 1.02716 0.97654 1.98385 1.19830 1.93056 1.91208 1.17231 0.89970 0.91770 0.90390 1.91570 1.77014 1.65466 1.75792 1.42457 1.28863 1.01169 1.63669 1.19197 1.03602 0.88519 1.26084 0.91172 1.24729 0.97652 0.97179 1.00964 1.69659 1.24364 1.15691 1.47882 0.86239 0.79426 0.81319 0.79440 1.21752 1.21856 1.20829 0.93422 0.94173 0.91604 0.90783 0.93047 0.93222 0.93532 0.91306 0.91779 0.75320 0.87076 0.87102 0.84413 0.84384 0.84151 0.78018 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.60 37.16 0.32 -2.07 16 2 C -0.11 -1.88 2.88 -90.62 -0.26 -2.14 16 3 C -0.15 -2.04 8.95 37.16 0.33 -1.70 16 4 C 0.17 3.08 2.22 -67.93 -0.15 2.93 16 5 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 6 C 0.11 1.85 4.53 -4.04 -0.02 1.83 16 7 N -0.71 -11.40 5.39 -60.29 -0.32 -11.73 16 8 C 0.51 8.16 7.82 -10.99 -0.09 8.07 16 9 O -0.55 -10.45 16.03 5.55 0.09 -10.36 16 10 C -0.11 -1.31 5.61 -29.04 -0.16 -1.47 16 11 C -0.08 -1.00 4.38 -104.56 -0.46 -1.46 16 12 C -0.08 -0.73 9.68 -39.59 -0.38 -1.12 16 13 C -0.12 -0.99 10.04 -39.58 -0.40 -1.39 16 14 C -0.09 -0.82 9.83 -39.56 -0.39 -1.21 16 15 C -0.07 -0.90 6.33 -39.44 -0.25 -1.15 16 16 Cl -0.05 -0.64 28.62 -51.86 -1.48 -2.12 16 17 C 0.13 1.77 7.22 -39.39 -0.28 1.48 16 18 F -0.12 -1.93 16.14 2.25 0.04 -1.89 16 19 N -0.72 -16.19 4.01 -53.42 -0.21 -16.41 16 20 C -0.24 -6.17 9.93 -15.06 -0.15 -6.32 16 21 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 23 N -0.93 -26.58 13.06 55.49 0.72 -25.86 16 24 Si 0.90 21.37 29.55 -169.99 -5.02 16.35 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H 0.05 0.76 6.23 -51.93 -0.32 0.44 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.29 7.75 -51.93 -0.40 0.88 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.05 0.68 6.68 -51.93 -0.35 0.33 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 1.26 6.06 -51.92 -0.31 0.95 16 36 H 0.06 1.01 6.81 -51.93 -0.35 0.66 16 37 H 0.41 6.55 8.14 -40.82 -0.33 6.22 16 38 H 0.11 1.37 7.79 -51.93 -0.40 0.96 16 39 H 0.11 0.99 8.05 -51.93 -0.42 0.57 16 40 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 42 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.39 9.54 7.80 -40.82 -0.32 9.22 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -30.60 383.91 -8.98 -39.59 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -6.14 Total: 12.68 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.43 Total: -6.04 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.19 Total: -53.99 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.48 Total: -2.12 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.60 -8.98 -39.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482556749.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.462 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds