Wall clock time and date at job start Wed Apr 1 2020 00:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46992 * 2 1 4 4 C 1.52995 * 109.47550 * 120.00068 * 2 1 3 5 5 H 1.08992 * 109.47370 * 184.99964 * 4 2 1 6 6 C 1.53004 * 109.47195 * 305.00003 * 4 2 1 7 7 N 1.46499 * 109.47198 * 174.99817 * 6 4 2 8 8 C 1.34777 * 119.99665 * 180.27868 * 7 6 4 9 9 O 1.21283 * 119.99990 * 359.71991 * 8 7 6 10 10 C 1.50698 * 119.99538 * 179.72653 * 8 7 6 11 11 C 1.50698 * 109.46944 * 179.97438 * 10 8 7 12 12 C 1.38243 * 120.00814 * 264.72200 * 11 10 8 13 13 C 1.38216 * 120.05108 * 179.76836 * 12 11 10 14 14 C 1.38266 * 120.06291 * 0.50723 * 13 12 11 15 15 C 1.38275 * 120.00584 * 359.74610 * 14 13 12 16 16 Cl 1.73604 * 120.01910 * 179.97438 * 15 14 13 17 17 C 1.38405 * 120.00767 * 84.99648 * 11 10 8 18 18 F 1.35102 * 120.03203 * 359.95844 * 17 11 10 19 19 N 1.46506 * 109.47091 * 64.99809 * 4 2 1 20 20 C 1.36929 * 119.99909 * 85.00050 * 19 4 2 21 21 H 1.08006 * 120.00094 * 0.02562 * 20 19 4 22 22 C 1.38816 * 120.00176 * 180.02562 * 20 19 4 23 23 N 1.31615 * 119.99668 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00011 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47137 * 90.00133 * 24 22 20 26 26 H 1.48503 * 109.46884 * 210.00261 * 24 22 20 27 27 H 1.48502 * 109.47201 * 329.99762 * 24 22 20 28 28 H 1.09003 * 109.46956 * 299.99425 * 1 2 3 29 29 H 1.09003 * 109.47409 * 59.99751 * 1 2 3 30 30 H 1.09001 * 109.47009 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46956 * 240.00575 * 2 1 3 32 32 H 1.08996 * 109.47018 * 60.00202 * 3 2 1 33 33 H 1.09003 * 109.47231 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47247 * 300.00348 * 3 2 1 35 35 H 1.09009 * 109.46730 * 54.99604 * 6 4 2 36 36 H 1.08998 * 109.46846 * 295.00148 * 6 4 2 37 37 H 0.97001 * 119.99790 * 359.97438 * 7 6 4 38 38 H 1.09003 * 109.47112 * 299.99065 * 10 8 7 39 39 H 1.08993 * 109.47916 * 59.99687 * 10 8 7 40 40 H 1.08001 * 119.97185 * 359.97438 * 12 11 10 41 41 H 1.08003 * 119.97403 * 180.25241 * 13 12 11 42 42 H 1.07996 * 119.99368 * 179.76893 * 14 13 12 43 43 H 0.97002 * 119.99781 * 265.00262 * 19 4 2 44 44 H 0.96996 * 119.99816 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1263 -0.6443 1.2950 6 6 1.4301 -0.0763 2.4953 7 7 1.8229 -0.8397 3.6823 8 6 1.3947 -0.4572 4.9017 9 8 0.6884 0.5220 5.0167 10 6 1.7938 -1.2461 6.1221 11 6 1.1889 -0.6137 7.3489 12 6 1.9265 0.2825 8.0999 13 6 1.3710 0.8667 9.2226 14 6 0.0803 0.5479 9.6025 15 6 -0.6579 -0.3521 8.8562 16 17 -2.2782 -0.7532 9.3333 17 6 -0.1032 -0.9343 7.7274 18 9 -0.8233 -1.8136 6.9969 19 7 1.6525 -2.1329 1.1905 20 6 2.4346 -3.0300 0.5134 21 1 3.3374 -2.6970 0.0228 22 6 2.0671 -4.3675 0.4573 23 7 0.9667 -4.7731 1.0546 24 14 3.1344 -5.5914 -0.4659 25 1 4.1442 -6.1645 0.4598 26 1 2.2831 -6.6815 -1.0063 27 1 3.8243 -4.9011 -1.5852 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 0.3435 -0.0736 2.4081 36 1 1.7897 0.9486 2.5870 37 1 2.3875 -1.6230 3.5902 38 1 1.4339 -2.2705 6.0261 39 1 2.8798 -1.2495 6.2135 40 1 2.9365 0.5288 7.8071 41 1 1.9469 1.5698 9.8060 42 1 -0.3513 1.0022 10.4821 43 1 0.8419 -2.4319 1.6314 44 1 0.7101 -5.7077 1.0158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482556749.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:22 Heat of formation + Delta-G solvation = -83.866906 kcal Electronic energy + Delta-G solvation = -27488.195298 eV Core-core repulsion = 23379.867489 eV Total energy + Delta-G solvation = -4108.327809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.05297 -41.03155 -39.90942 -38.75685 -37.60250 -35.16116 -35.02304 -33.92448 -32.20743 -31.41441 -29.75856 -28.04034 -27.94246 -25.63011 -24.08311 -23.83596 -23.08650 -21.35912 -20.07630 -19.28497 -18.75014 -17.99681 -17.87019 -17.59154 -16.93161 -16.77910 -16.63102 -16.17861 -15.47246 -15.43342 -15.38508 -15.00215 -14.90944 -14.50628 -14.37088 -14.23731 -14.09610 -13.96600 -13.68715 -13.35226 -12.86480 -12.79942 -12.72832 -12.64080 -12.48483 -12.43454 -12.40561 -12.22066 -12.08391 -11.96096 -11.86144 -11.51430 -11.22178 -11.01639 -10.82212 -9.95911 -9.85971 -9.70734 -8.96599 -7.89066 -5.17254 -0.02750 0.02481 0.95527 1.50205 1.51541 1.58919 1.65254 2.21479 2.57354 2.60585 3.08346 3.40408 3.44725 3.80786 3.86948 3.90890 3.98681 4.05405 4.17563 4.23815 4.29143 4.36757 4.44797 4.50227 4.53711 4.68379 4.74808 4.87104 4.91465 4.94712 4.96007 5.09806 5.17456 5.17957 5.23214 5.30008 5.31647 5.48953 5.55665 5.61599 5.68992 5.72196 6.31096 6.61257 7.26448 7.38946 8.11838 8.36316 9.33477 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.012193 B = 0.002802 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.930636 B = 9988.839451 C =10963.277386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 C -0.139 4.139 4 C 0.172 3.828 5 H 0.059 0.941 6 C 0.120 3.880 7 N -0.711 5.711 8 C 0.512 3.488 9 O -0.581 6.581 10 C -0.101 4.101 11 C -0.098 4.098 12 C -0.075 4.075 13 C -0.105 4.105 14 C -0.084 4.084 15 C -0.090 4.090 16 Cl -0.062 7.062 17 C 0.086 3.914 18 F -0.146 7.146 19 N -0.726 5.726 20 C -0.229 4.229 21 H 0.078 0.922 22 C -0.069 4.069 23 N -0.967 5.967 24 Si 0.964 3.036 25 H -0.287 1.287 26 H -0.305 1.305 27 H -0.272 1.272 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.030 0.970 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.411 0.589 38 H 0.104 0.896 39 H 0.148 0.852 40 H 0.167 0.833 41 H 0.180 0.820 42 H 0.168 0.832 43 H 0.372 0.628 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.312 13.915 16.771 22.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 C -0.197 4.197 4 C 0.063 3.937 5 H 0.077 0.923 6 C -0.004 4.004 7 N -0.362 5.362 8 C 0.299 3.701 9 O -0.462 6.462 10 C -0.140 4.140 11 C -0.100 4.100 12 C -0.092 4.092 13 C -0.123 4.123 14 C -0.103 4.103 15 C -0.118 4.118 16 Cl -0.033 7.033 17 C 0.066 3.934 18 F -0.124 7.124 19 N -0.366 5.366 20 C -0.361 4.361 21 H 0.096 0.904 22 C -0.262 4.262 23 N -0.617 5.617 24 Si 0.794 3.206 25 H -0.214 1.214 26 H -0.232 1.232 27 H -0.197 1.197 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.248 0.752 38 H 0.122 0.878 39 H 0.166 0.834 40 H 0.185 0.815 41 H 0.197 0.803 42 H 0.185 0.815 43 H 0.204 0.796 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.796 14.459 16.734 22.439 hybrid contribution -0.550 -2.044 -0.954 2.322 sum 3.246 12.416 15.780 20.339 Atomic orbital electron populations 1.21727 0.96018 1.00398 1.01169 1.21627 0.95821 0.96526 0.98982 1.21824 1.01153 0.94615 1.02098 1.20666 0.97408 0.83782 0.91796 0.92287 1.21672 0.99243 0.95298 0.84200 1.45991 1.52463 1.31940 1.05810 1.20839 0.79436 0.84724 0.85114 1.90666 1.39086 1.29359 1.87041 1.20655 1.05159 0.99777 0.88443 1.19543 0.92146 1.00511 0.97770 1.21454 1.01256 0.92834 0.93704 1.21615 0.94255 0.99738 0.96689 1.21369 0.94452 0.94777 0.99656 1.21209 0.88929 1.03694 0.97924 1.98373 1.20548 1.93260 1.91160 1.17707 0.91032 0.93000 0.91616 1.91493 1.77746 1.66570 1.76618 1.42556 1.27995 1.02845 1.63202 1.19535 1.03330 0.88836 1.24380 0.90447 1.25402 0.98998 0.99023 1.02764 1.69817 1.26379 1.15294 1.50242 0.85279 0.77767 0.78981 0.78524 1.21394 1.23232 1.19748 0.92748 0.92374 0.95110 0.92881 0.92225 0.92110 0.92095 0.93197 0.90104 0.75247 0.87815 0.83403 0.81508 0.80277 0.81489 0.79609 0.94381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.55 8.60 71.98 0.62 -3.93 16 2 C -0.11 -3.52 2.88 -10.79 -0.03 -3.55 16 3 C -0.14 -3.46 8.95 71.98 0.64 -2.81 16 4 C 0.17 6.10 2.22 44.99 0.10 6.20 16 5 H 0.06 2.04 8.08 -2.39 -0.02 2.03 16 6 C 0.12 3.96 4.53 86.38 0.39 4.35 16 7 N -0.71 -22.60 5.39 -463.05 -2.49 -25.09 16 8 C 0.51 16.10 7.82 87.66 0.69 16.78 16 9 O -0.58 -22.10 16.03 -3.04 -0.05 -22.15 16 10 C -0.10 -2.40 5.61 29.10 0.16 -2.23 16 11 C -0.10 -2.34 4.38 -19.82 -0.09 -2.43 16 12 C -0.07 -1.22 9.68 22.27 0.22 -1.00 16 13 C -0.11 -1.35 10.04 22.27 0.22 -1.13 16 14 C -0.08 -1.37 9.83 22.29 0.22 -1.15 16 15 C -0.09 -2.16 6.33 22.36 0.14 -2.02 16 16 Cl -0.06 -1.50 28.62 -2.72 -0.08 -1.58 16 17 C 0.09 2.45 7.22 22.39 0.16 2.62 16 18 F -0.15 -4.99 16.14 44.97 0.73 -4.26 16 19 N -0.73 -33.03 4.01 -322.94 -1.30 -34.33 16 20 C -0.23 -11.63 9.93 84.04 0.83 -10.79 16 21 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 22 C -0.07 -3.76 5.50 84.86 0.47 -3.30 16 23 N -0.97 -56.98 13.06 21.65 0.28 -56.69 16 24 Si 0.96 44.37 29.55 68.60 2.03 46.39 16 25 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 26 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 27 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 28 H 0.05 1.73 6.23 -2.39 -0.01 1.71 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.03 1.22 7.75 -2.39 -0.02 1.20 16 31 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.06 1.40 6.68 -2.39 -0.02 1.38 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.85 6.06 -2.38 -0.01 1.83 16 36 H 0.08 2.41 6.81 -2.39 -0.02 2.39 16 37 H 0.41 13.02 8.14 -92.71 -0.75 12.27 16 38 H 0.10 2.62 7.79 -2.39 -0.02 2.60 16 39 H 0.15 2.29 8.05 -2.39 -0.02 2.27 16 40 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 41 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 42 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 43 H 0.37 19.01 7.80 -92.71 -0.72 18.28 16 44 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -68.91 383.91 3.43 -65.48 By element: Atomic # 1 Polarization: 37.07 SS G_CDS: -0.44 Total: 36.64 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 4.75 Total: -4.41 kcal Atomic # 7 Polarization: -112.61 SS G_CDS: -3.51 Total: -116.12 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.05 Total: -22.15 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.73 Total: -4.26 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.08 Total: -1.58 kcal Total: -68.91 3.43 -65.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482556749.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.391 kcal (2) G-P(sol) polarization free energy of solvation -68.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds