Wall clock time and date at job start Wed Apr 1 2020 03:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 N 1.46500 * 109.46757 * 180.02562 * 5 4 2 7 7 C 1.34774 * 119.99693 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00350 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.00012 * 179.97438 * 7 6 5 10 10 S 1.81005 * 109.47279 * 179.97438 * 9 7 6 11 11 C 1.76200 * 99.99942 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00225 * 359.97438 * 11 10 9 13 13 C 1.38802 * 120.00190 * 179.97438 * 11 10 9 14 14 N 1.31629 * 120.00200 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99565 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47205 * 89.99804 * 15 13 11 17 17 H 1.48506 * 109.46931 * 209.99675 * 15 13 11 18 18 H 1.48499 * 109.47208 * 330.00113 * 15 13 11 19 19 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 20 20 C 1.34778 * 119.99771 * 274.99826 * 19 2 1 21 21 O 1.21540 * 120.00160 * 0.02562 * 20 19 2 22 22 C 1.48006 * 119.99886 * 180.02562 * 20 19 2 23 23 N 1.34187 * 126.69988 * 359.68761 * 22 20 19 24 24 N 1.28990 * 107.25199 * 179.83729 * 23 22 20 25 25 N 1.28721 * 108.98427 * 0.43530 * 24 23 22 26 26 C 1.46497 * 125.31564 * 179.68969 * 25 24 23 27 27 N 1.28862 * 109.35910 * 359.72118 * 25 24 23 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 32 32 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 33 33 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 34 34 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 35 35 H 0.96999 * 120.00502 * 359.97438 * 6 5 4 36 36 H 1.09000 * 109.47295 * 300.00220 * 9 7 6 37 37 H 1.09001 * 109.47077 * 59.99846 * 9 7 6 38 38 H 0.97002 * 120.00014 * 180.02562 * 14 13 11 39 39 H 0.96998 * 120.00630 * 95.00428 * 19 2 1 40 40 H 1.09001 * 109.47343 * 270.04132 * 26 25 24 41 41 H 1.09002 * 109.47059 * 30.03617 * 26 25 24 42 42 H 1.09000 * 109.47226 * 150.03583 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 7 4.0532 -1.3035 -2.5100 7 6 5.3741 -1.3396 -2.7751 8 8 6.1585 -0.8004 -2.0236 9 6 5.8765 -2.0500 -4.0056 10 16 7.6804 -1.9222 -4.0818 11 6 7.9875 -2.8122 -5.5712 12 1 7.1639 -3.2357 -6.1268 13 6 9.2880 -2.9690 -6.0304 14 7 9.5174 -3.6344 -7.1428 15 14 10.7125 -2.2371 -5.0690 16 1 11.2056 -3.2305 -4.0814 17 1 11.8102 -1.8820 -6.0041 18 1 10.2544 -1.0170 -4.3572 19 7 2.0183 -0.6906 1.1962 20 6 2.1470 -0.0182 2.3571 21 8 1.8575 1.1609 2.4118 22 6 2.6408 -0.7158 3.5655 23 7 2.9914 -2.0077 3.6586 24 7 3.3674 -2.2153 4.8749 25 7 3.2578 -1.1187 5.5401 26 6 3.5831 -0.9526 6.9588 27 7 2.8167 -0.1901 4.7631 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.7517 -1.7715 -1.2055 32 1 1.6055 -0.2618 -2.1369 33 1 3.8533 0.4369 -1.3572 34 1 3.9995 -1.0728 -0.4258 35 1 3.4260 -1.7351 -3.1110 36 1 5.5879 -3.1002 -3.9621 37 1 5.4422 -1.5903 -4.8933 38 1 10.4263 -3.7443 -7.4635 39 1 2.2490 -1.6318 1.1527 40 1 2.6987 -1.1604 7.5611 41 1 4.3797 -1.6446 7.2323 42 1 3.9130 0.0706 7.1386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495459179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:21 Heat of formation + Delta-G solvation = 53.472836 kcal Electronic energy + Delta-G solvation = -26010.668559 eV Core-core repulsion = 21962.552668 eV Total energy + Delta-G solvation = -4048.115891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.88369 -40.29451 -39.24671 -36.99987 -35.74977 -34.56692 -33.65939 -32.43251 -32.15138 -30.26605 -29.25702 -28.23793 -25.86651 -25.60648 -23.81269 -23.36580 -21.98143 -21.15703 -20.42264 -18.97044 -18.10299 -17.87079 -17.31554 -16.91186 -16.32675 -16.07978 -15.51809 -15.38131 -14.94909 -14.89908 -14.56099 -14.18592 -14.12787 -13.89253 -13.83169 -13.79990 -13.35930 -12.97423 -12.78913 -12.64647 -12.46869 -12.28225 -11.75226 -11.65964 -11.61717 -11.58142 -11.36061 -11.25112 -11.00006 -10.88183 -10.75971 -10.59597 -9.85301 -9.66404 -9.50104 -9.01799 -8.96124 -8.49007 -6.90963 -6.28258 -3.99856 0.50857 0.98594 1.24380 2.35462 2.66178 2.76581 2.98616 3.29501 3.34563 3.49444 3.51656 3.61241 3.64721 4.23990 4.32235 4.34113 4.39370 4.44894 4.56461 4.66811 4.74252 4.76817 5.01192 5.02333 5.10777 5.10845 5.24829 5.29151 5.34614 5.45148 5.51523 5.65102 5.78262 5.78495 5.85529 5.97868 6.01890 6.50747 6.87496 7.52440 7.60193 7.72130 7.94801 8.42204 8.49777 9.18024 10.80899 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.013420 B = 0.002024 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.964446 B =13828.503355 C =15384.179208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.147 3.853 3 H 0.099 0.901 4 C -0.140 4.140 5 C 0.119 3.881 6 N -0.737 5.737 7 C 0.529 3.471 8 O -0.519 6.519 9 C -0.124 4.124 10 S -0.143 6.143 11 C -0.521 4.521 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.702 5.702 20 C 0.621 3.379 21 O -0.505 6.505 22 C 0.127 3.873 23 N -0.251 5.251 24 N -0.051 5.051 25 N -0.133 5.133 26 C 0.091 3.909 27 N -0.246 5.246 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.400 0.600 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.412 0.588 40 H 0.107 0.893 41 H 0.118 0.882 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.123 4.784 24.705 32.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.043 3.957 3 H 0.117 0.883 4 C -0.179 4.179 5 C -0.006 4.006 6 N -0.392 5.392 7 C 0.315 3.685 8 O -0.393 6.393 9 C -0.274 4.274 10 S 0.084 5.916 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.681 3.319 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.355 5.355 20 C 0.401 3.599 21 O -0.376 6.376 22 C -0.157 4.157 23 N -0.127 5.127 24 N -0.045 5.045 25 N -0.046 5.046 26 C -0.049 4.049 27 N -0.101 5.101 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.234 0.766 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.249 0.751 40 H 0.125 0.875 41 H 0.136 0.864 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.671 6.043 26.251 33.356 hybrid contribution -0.451 -0.874 -1.076 1.458 sum -20.122 5.169 25.175 32.640 Atomic orbital electron populations 1.22190 0.94213 1.02691 1.03154 1.21043 0.94547 0.97831 0.82256 0.88302 1.22144 0.95450 1.02281 0.97978 1.21299 0.92671 0.98099 0.88497 1.45934 1.07722 1.58493 1.27064 1.20292 0.81654 0.79760 0.86762 1.90710 1.54998 1.44498 1.49098 1.23278 1.03010 1.03246 0.97909 1.84813 0.98336 1.73675 1.34817 1.22317 0.97281 1.39236 1.08028 0.89372 1.24716 0.98309 0.93900 0.94418 1.69938 1.21692 1.39364 1.20687 0.86734 0.82437 0.82040 0.80640 1.19220 1.19950 1.15922 1.45822 1.66298 1.14844 1.08577 1.16040 0.77991 0.85293 0.80567 1.90870 1.48789 1.14190 1.83768 1.25263 1.05815 0.89998 0.94633 1.76149 1.13620 1.13898 1.08990 1.78974 1.15962 1.10561 0.99034 1.50282 1.37928 1.03457 1.12957 1.22606 1.04739 1.07053 0.70468 1.75078 1.15195 1.18181 1.01617 0.91994 0.91741 0.90899 0.90102 0.88898 0.91376 0.91483 0.76623 0.88473 0.88441 0.91953 0.75138 0.87488 0.86359 0.86606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.48 37.16 0.35 -0.61 16 2 C 0.15 1.03 2.57 -67.93 -0.17 0.86 16 3 H 0.10 0.83 7.58 -51.93 -0.39 0.44 16 4 C -0.14 -0.85 4.87 -26.73 -0.13 -0.98 16 5 C 0.12 1.22 5.56 -4.04 -0.02 1.20 16 6 N -0.74 -8.77 5.56 -60.29 -0.33 -9.11 16 7 C 0.53 9.31 7.85 -10.99 -0.09 9.22 16 8 O -0.52 -11.33 15.86 5.56 0.09 -11.24 16 9 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 10 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 11 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 12 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 13 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 14 N -0.88 -26.60 13.97 55.49 0.78 -25.82 16 15 Si 0.86 21.93 27.74 -169.99 -4.72 17.21 16 16 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.24 -6.03 6.74 56.52 0.38 -5.64 16 19 N -0.70 -5.80 4.53 -54.70 -0.25 -6.04 16 20 C 0.62 6.91 7.80 -12.26 -0.10 6.81 16 21 O -0.51 -6.94 16.76 5.33 0.09 -6.86 16 22 C 0.13 1.43 8.14 -156.25 -1.27 0.16 16 23 N -0.25 -2.79 12.26 32.10 0.39 -2.40 16 24 N -0.05 -0.51 13.23 60.35 0.80 0.29 16 25 N -0.13 -1.05 4.39 -16.65 -0.07 -1.13 16 26 C 0.09 0.15 11.62 59.85 0.70 0.85 16 27 N -0.25 -2.63 12.16 32.11 0.39 -2.24 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.78 7.75 -51.93 -0.40 0.38 16 35 H 0.40 3.45 8.47 -40.82 -0.35 3.10 16 36 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 37 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 38 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.41 2.94 8.35 -40.82 -0.34 2.60 16 40 H 0.11 -0.05 8.14 -51.93 -0.42 -0.47 16 41 H 0.12 -0.03 8.14 -51.93 -0.42 -0.46 16 42 H 0.12 0.04 8.14 -51.93 -0.42 -0.39 16 LS Contribution 383.61 15.07 5.78 5.78 Total: -1.00 -39.65 383.61 -5.05 -44.70 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -5.71 Total: -0.85 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -0.30 Total: 3.34 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 1.70 Total: -46.45 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.18 Total: -18.09 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.72 Total: 17.21 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.65 -5.05 -44.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495459179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.173 kcal (2) G-P(sol) polarization free energy of solvation -39.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds