Wall clock time and date at job start Wed Apr 1 2020 03:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 N 1.46500 * 109.46757 * 180.02562 * 5 4 2 7 7 C 1.34774 * 119.99693 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00350 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.00012 * 179.97438 * 7 6 5 10 10 S 1.81005 * 109.47279 * 179.97438 * 9 7 6 11 11 C 1.76200 * 99.99942 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00225 * 359.97438 * 11 10 9 13 13 C 1.38802 * 120.00190 * 179.97438 * 11 10 9 14 14 N 1.31629 * 120.00200 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99565 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47205 * 89.99804 * 15 13 11 17 17 H 1.48506 * 109.46931 * 209.99675 * 15 13 11 18 18 H 1.48499 * 109.47208 * 330.00113 * 15 13 11 19 19 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 20 20 C 1.34778 * 119.99771 * 274.99826 * 19 2 1 21 21 O 1.21540 * 120.00160 * 0.02562 * 20 19 2 22 22 C 1.48006 * 119.99886 * 180.02562 * 20 19 2 23 23 N 1.34187 * 126.69988 * 359.68761 * 22 20 19 24 24 N 1.28990 * 107.25199 * 179.83729 * 23 22 20 25 25 N 1.28721 * 108.98427 * 0.43530 * 24 23 22 26 26 C 1.46497 * 125.31564 * 179.68969 * 25 24 23 27 27 N 1.28862 * 109.35910 * 359.72118 * 25 24 23 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 32 32 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 33 33 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 34 34 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 35 35 H 0.96999 * 120.00502 * 359.97438 * 6 5 4 36 36 H 1.09000 * 109.47295 * 300.00220 * 9 7 6 37 37 H 1.09001 * 109.47077 * 59.99846 * 9 7 6 38 38 H 0.97002 * 120.00014 * 180.02562 * 14 13 11 39 39 H 0.96998 * 120.00630 * 95.00428 * 19 2 1 40 40 H 1.09001 * 109.47343 * 270.04132 * 26 25 24 41 41 H 1.09002 * 109.47059 * 30.03617 * 26 25 24 42 42 H 1.09000 * 109.47226 * 150.03583 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 7 4.0532 -1.3035 -2.5100 7 6 5.3741 -1.3396 -2.7751 8 8 6.1585 -0.8004 -2.0236 9 6 5.8765 -2.0500 -4.0056 10 16 7.6804 -1.9222 -4.0818 11 6 7.9875 -2.8122 -5.5712 12 1 7.1639 -3.2357 -6.1268 13 6 9.2880 -2.9690 -6.0304 14 7 9.5174 -3.6344 -7.1428 15 14 10.7125 -2.2371 -5.0690 16 1 11.2056 -3.2305 -4.0814 17 1 11.8102 -1.8820 -6.0041 18 1 10.2544 -1.0170 -4.3572 19 7 2.0183 -0.6906 1.1962 20 6 2.1470 -0.0182 2.3571 21 8 1.8575 1.1609 2.4118 22 6 2.6408 -0.7158 3.5655 23 7 2.9914 -2.0077 3.6586 24 7 3.3674 -2.2153 4.8749 25 7 3.2578 -1.1187 5.5401 26 6 3.5831 -0.9526 6.9588 27 7 2.8167 -0.1901 4.7631 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.7517 -1.7715 -1.2055 32 1 1.6055 -0.2618 -2.1369 33 1 3.8533 0.4369 -1.3572 34 1 3.9995 -1.0728 -0.4258 35 1 3.4260 -1.7351 -3.1110 36 1 5.5879 -3.1002 -3.9621 37 1 5.4422 -1.5903 -4.8933 38 1 10.4263 -3.7443 -7.4635 39 1 2.2490 -1.6318 1.1527 40 1 2.6987 -1.1604 7.5611 41 1 4.3797 -1.6446 7.2323 42 1 3.9130 0.0706 7.1386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495459179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:20 Heat of formation + Delta-G solvation = 20.566052 kcal Electronic energy + Delta-G solvation = -26012.095504 eV Core-core repulsion = 21962.552668 eV Total energy + Delta-G solvation = -4049.542837 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.126 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.59692 -41.11056 -40.55722 -37.81529 -36.37044 -35.65183 -34.66506 -34.40391 -32.95914 -31.42629 -29.71429 -29.20833 -27.83579 -26.60085 -24.54412 -24.05827 -22.70982 -21.99343 -21.57864 -19.94245 -19.59242 -18.77042 -18.01629 -17.74099 -17.58723 -17.29845 -17.02657 -16.69842 -16.21738 -15.74874 -15.64440 -15.27352 -15.08738 -14.96340 -14.78439 -14.44932 -14.36202 -14.15747 -13.65919 -13.62079 -13.34315 -13.23054 -13.02140 -13.00984 -12.71468 -12.43213 -12.40566 -12.37673 -12.29605 -11.95340 -11.85469 -11.60704 -11.53133 -11.16893 -11.01059 -10.52144 -10.35630 -10.10858 -8.99045 -8.51140 -6.21603 -0.21918 0.20244 0.76780 0.99936 1.31052 1.47110 1.56340 1.58283 1.69244 1.83830 2.22603 2.26907 2.72988 2.75591 2.87040 3.02646 3.71141 3.77017 3.94516 4.01479 4.03137 4.08523 4.20492 4.26380 4.43032 4.45109 4.47694 4.49515 4.58598 4.64097 4.77848 4.90782 4.92434 5.00046 5.12894 5.32333 5.37463 5.42739 5.71435 6.12178 6.15352 6.50756 6.78886 6.94335 6.97391 7.23108 8.61046 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.013420 B = 0.002024 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.964446 B =13828.503355 C =15384.179208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.145 3.855 3 H 0.083 0.917 4 C -0.124 4.124 5 C 0.116 3.884 6 N -0.708 5.708 7 C 0.532 3.468 8 O -0.568 6.568 9 C -0.110 4.110 10 S -0.183 6.183 11 C -0.527 4.527 12 H 0.064 0.936 13 C 0.045 3.955 14 N -0.916 5.916 15 Si 0.913 3.087 16 H -0.263 1.263 17 H -0.259 1.259 18 H -0.238 1.238 19 N -0.689 5.689 20 C 0.619 3.381 21 O -0.540 6.540 22 C 0.112 3.888 23 N -0.266 5.266 24 N -0.063 5.063 25 N -0.115 5.115 26 C 0.072 3.928 27 N -0.265 5.265 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.421 0.579 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.277 0.723 39 H 0.419 0.581 40 H 0.133 0.867 41 H 0.140 0.860 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.558 4.599 25.705 34.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.042 3.958 3 H 0.101 0.899 4 C -0.162 4.162 5 C -0.007 4.007 6 N -0.362 5.362 7 C 0.317 3.683 8 O -0.446 6.446 9 C -0.261 4.261 10 S 0.044 5.956 11 C -0.674 4.674 12 H 0.083 0.917 13 C -0.160 4.160 14 N -0.554 5.554 15 Si 0.735 3.265 16 H -0.188 1.188 17 H -0.183 1.183 18 H -0.162 1.162 19 N -0.342 5.342 20 C 0.399 3.601 21 O -0.414 6.414 22 C -0.172 4.172 23 N -0.141 5.141 24 N -0.056 5.056 25 N -0.030 5.030 26 C -0.065 4.065 27 N -0.121 5.121 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.258 0.742 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.086 0.914 39 H 0.256 0.744 40 H 0.151 0.849 41 H 0.159 0.841 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.163 5.806 27.226 34.969 hybrid contribution -0.150 -0.838 -1.274 1.532 sum -21.313 4.969 25.952 33.947 Atomic orbital electron populations 1.22134 0.92743 1.03564 1.03117 1.21157 0.95579 0.97097 0.82013 0.89915 1.22083 0.91866 1.03947 0.98268 1.21426 0.95569 0.96772 0.86974 1.45660 1.05971 1.57091 1.27498 1.20016 0.83168 0.79337 0.85753 1.90702 1.56660 1.46805 1.50452 1.23272 0.97909 1.05066 0.99826 1.84785 1.04771 1.73177 1.32879 1.22454 0.96809 1.39117 1.09035 0.91736 1.25549 1.00793 0.94355 0.95321 1.70012 1.22687 1.40631 1.22044 0.85882 0.79788 0.81194 0.79596 1.18786 1.18341 1.16239 1.45866 1.65108 1.15053 1.08177 1.16162 0.77739 0.84972 0.81196 1.90841 1.50685 1.15542 1.84375 1.25332 1.06598 0.90266 0.95014 1.76093 1.14295 1.13899 1.09779 1.78887 1.16457 1.11304 0.98975 1.50813 1.35720 1.02323 1.14193 1.23270 1.06800 1.08787 0.67628 1.75042 1.15956 1.19162 1.01900 0.90620 0.93644 0.89099 0.87720 0.86406 0.92856 0.92812 0.74167 0.86598 0.86576 0.91391 0.74361 0.84894 0.84140 0.85114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.48 71.98 0.68 -0.81 16 2 C 0.15 1.80 2.57 44.99 0.12 1.92 16 3 H 0.08 1.35 7.58 -2.39 -0.02 1.33 16 4 C -0.12 -1.09 4.87 30.60 0.15 -0.94 16 5 C 0.12 2.17 5.56 86.38 0.48 2.65 16 6 N -0.71 -14.92 5.56 -463.05 -2.57 -17.49 16 7 C 0.53 17.85 7.85 87.66 0.69 18.54 16 8 O -0.57 -24.59 15.86 -3.03 -0.05 -24.64 16 9 C -0.11 -4.02 6.16 71.24 0.44 -3.59 16 10 S -0.18 -9.26 18.55 -56.49 -1.05 -10.30 16 11 C -0.53 -30.58 10.04 67.95 0.68 -29.90 16 12 H 0.06 3.92 8.03 -2.91 -0.02 3.90 16 13 C 0.05 2.66 5.50 84.86 0.47 3.13 16 14 N -0.92 -55.71 13.97 21.65 0.30 -55.41 16 15 Si 0.91 45.34 27.74 68.60 1.90 47.24 16 16 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 18 H -0.24 -11.88 6.74 99.48 0.67 -11.21 16 19 N -0.69 -10.90 4.53 -445.24 -2.02 -12.91 16 20 C 0.62 13.99 7.80 86.83 0.68 14.67 16 21 O -0.54 -15.34 16.76 -3.84 -0.06 -15.40 16 22 C 0.11 2.55 8.14 137.15 1.12 3.67 16 23 N -0.27 -5.88 12.26 -52.37 -0.64 -6.52 16 24 N -0.06 -1.21 13.23 37.02 0.49 -0.72 16 25 N -0.12 -1.72 4.39 -206.59 -0.91 -2.63 16 26 C 0.07 0.10 11.62 127.77 1.49 1.59 16 27 N -0.27 -5.64 12.16 -52.32 -0.64 -6.28 16 28 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.12 0.57 8.14 -2.39 -0.02 0.56 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 1.19 7.75 -2.39 -0.02 1.17 16 35 H 0.42 5.54 8.47 -92.71 -0.79 4.76 16 36 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 37 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 38 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 39 H 0.42 5.51 8.35 -92.71 -0.77 4.74 16 40 H 0.13 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H 0.14 -0.40 8.14 -2.39 -0.02 -0.42 16 42 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 Total: -1.00 -88.78 383.61 1.22 -87.56 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -0.52 Total: 6.58 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 6.98 Total: 10.92 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: -5.98 Total: -101.96 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -0.11 Total: -40.04 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.90 Total: 47.24 kcal Atomic # 16 Polarization: -9.26 SS G_CDS: -1.05 Total: -10.30 kcal Total: -88.78 1.22 -87.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495459179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.123 kcal (2) G-P(sol) polarization free energy of solvation -88.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds