Wall clock time and date at job start Wed Apr 1 2020 01:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47306 * 2 1 4 4 H 1.09002 * 109.46892 * 305.00508 * 3 2 1 5 5 C 1.52996 * 109.47530 * 184.99714 * 3 2 1 6 6 N 1.46498 * 109.47059 * 184.99929 * 5 3 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 3 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 N 1.46492 * 109.47441 * 180.02562 * 9 7 6 11 11 C 1.34601 * 126.44301 * 125.00074 * 10 9 7 12 12 N 1.31065 * 106.68160 * 180.02562 * 11 10 9 13 13 N 1.28839 * 107.99301 * 0.02562 * 12 11 10 14 14 N 1.28737 * 109.39586 * 359.72942 * 13 12 11 15 15 N 1.46506 * 109.46609 * 64.99913 * 3 2 1 16 16 C 1.34782 * 119.99726 * 274.99704 * 15 3 2 17 17 O 1.21278 * 120.00302 * 0.02562 * 16 15 3 18 18 C 1.50704 * 119.99703 * 179.97438 * 16 15 3 19 19 S 1.80999 * 109.46986 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99763 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00242 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99547 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00072 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99596 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46970 * 90.00304 * 24 22 20 26 26 H 1.48503 * 109.46793 * 209.99826 * 24 22 20 27 27 H 1.48498 * 109.47251 * 329.99895 * 24 22 20 28 28 H 1.09001 * 109.46772 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47382 * 299.99589 * 1 2 3 30 30 H 1.09003 * 109.47243 * 60.00250 * 1 2 3 31 31 H 1.09001 * 109.47619 * 240.00089 * 2 1 3 32 32 H 1.09003 * 109.47243 * 119.99750 * 2 1 3 33 33 H 1.09004 * 109.47066 * 65.00196 * 5 3 2 34 34 H 1.08994 * 109.46974 * 305.00344 * 5 3 2 35 35 H 0.97001 * 120.00384 * 0.02562 * 6 5 3 36 36 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 37 37 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 38 38 H 1.08001 * 126.65323 * 0.03653 * 11 10 9 39 39 H 0.97000 * 120.00390 * 95.00648 * 15 3 2 40 40 H 1.09000 * 109.47086 * 300.00860 * 18 16 15 41 41 H 1.09006 * 109.46761 * 60.00688 * 18 16 15 42 42 H 0.97002 * 119.99419 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1256 6 7 4.0629 2.8169 -0.0059 7 6 5.3860 3.0624 -0.0806 8 8 6.1639 2.1478 -0.2521 9 6 5.8991 4.4735 0.0488 10 7 7.3594 4.4748 -0.0668 11 6 8.0922 5.1979 -0.9338 12 7 9.3481 4.9029 -0.7025 13 7 9.3849 4.0430 0.2562 14 7 8.1852 3.7861 0.6463 15 7 1.6524 2.0974 1.2519 16 6 0.4350 2.6644 1.3669 17 8 -0.3397 2.6320 0.4344 18 6 0.0361 3.3376 2.6549 19 16 -1.6428 3.9952 2.4970 20 6 -1.8445 4.7062 4.0966 21 1 -1.0441 4.6460 4.8191 22 6 -3.0321 5.3438 4.4278 23 7 -4.0078 5.4167 3.5473 24 14 -3.2462 6.0970 6.1238 25 1 -2.7844 7.5081 6.1005 26 1 -4.6799 6.0516 6.5081 27 1 -2.4446 5.3300 7.1109 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8499 1.0378 -1.0960 34 1 3.9953 0.8312 0.6659 35 1 3.4409 3.5484 0.1316 36 1 5.4717 5.0895 -0.7424 37 1 5.6107 4.8774 1.0193 38 1 7.7179 5.8875 -1.6759 39 1 2.2718 2.1232 1.9979 40 1 0.0671 2.6128 3.4685 41 1 0.7275 4.1529 2.8680 42 1 -4.8376 5.8626 3.7788 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001531069374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:27 Heat of formation + Delta-G solvation = 49.205834 kcal Electronic energy + Delta-G solvation = -26559.718370 eV Core-core repulsion = 22511.417448 eV Total energy + Delta-G solvation = -4048.300922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.126 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.52614 -40.58131 -39.64878 -36.82180 -35.81291 -34.42964 -32.79946 -32.58134 -32.52144 -30.48424 -29.30599 -28.01978 -25.58311 -24.38447 -24.18243 -23.18413 -21.73485 -21.03699 -20.53951 -18.60459 -18.27953 -17.88971 -16.97982 -16.88276 -16.60130 -16.26807 -16.03908 -15.81524 -15.33517 -14.89333 -14.52920 -14.31015 -14.15517 -13.73775 -13.58423 -13.36925 -13.23755 -12.96752 -12.62706 -12.51223 -12.42498 -11.91905 -11.63158 -11.58215 -11.49036 -11.37711 -11.14955 -11.11405 -10.92125 -10.83907 -10.81029 -10.45394 -9.91389 -9.76856 -9.54044 -9.16816 -9.07956 -8.36299 -6.61587 -6.31697 -4.03054 0.84239 1.35463 1.82997 1.94048 2.41955 2.84333 2.89992 3.14947 3.20402 3.23866 3.53095 3.62263 3.79971 3.89336 4.10875 4.15214 4.18605 4.37646 4.68482 4.84873 4.97450 5.01737 5.04038 5.07524 5.20571 5.28475 5.29844 5.47106 5.59942 5.62424 5.68130 5.72208 5.80124 5.95199 5.99450 6.10540 6.40582 6.50741 6.73308 7.44562 7.47161 7.50313 8.25153 8.26192 8.41196 9.14182 10.75546 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.011486 B = 0.002275 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.238488 B =12306.864577 C =14252.182750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C 0.135 3.865 4 H 0.097 0.903 5 C 0.114 3.886 6 N -0.719 5.719 7 C 0.502 3.498 8 O -0.510 6.510 9 C 0.094 3.906 10 N -0.301 5.301 11 C 0.161 3.839 12 N -0.307 5.307 13 N -0.078 5.078 14 N -0.063 5.063 15 N -0.738 5.738 16 C 0.533 3.467 17 O -0.506 6.506 18 C -0.155 4.155 19 S -0.057 6.057 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.409 0.591 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.236 0.764 39 H 0.398 0.602 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.824 -2.952 -9.174 19.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.029 3.971 4 H 0.115 0.885 5 C -0.010 4.010 6 N -0.373 5.373 7 C 0.285 3.715 8 O -0.384 6.384 9 C -0.032 4.032 10 N -0.103 5.103 11 C -0.138 4.138 12 N -0.154 5.154 13 N -0.072 5.072 14 N -0.050 5.050 15 N -0.394 5.394 16 C 0.319 3.681 17 O -0.380 6.380 18 C -0.306 4.306 19 S 0.169 5.831 20 C -0.686 4.686 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.245 0.755 36 H 0.164 0.836 37 H 0.157 0.843 38 H 0.252 0.748 39 H 0.233 0.767 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 16.965 -4.295 -10.250 20.281 hybrid contribution -0.288 1.352 2.169 2.571 sum 16.677 -2.943 -8.081 18.765 Atomic orbital electron populations 1.21803 0.93864 1.00878 1.03862 1.21884 0.97929 0.94770 1.02322 1.21249 0.91897 0.95011 0.88905 0.88456 1.21777 0.93096 0.82471 1.03628 1.45826 1.06606 1.10903 1.73977 1.20130 0.83130 0.90161 0.78102 1.90873 1.55466 1.45181 1.46876 1.22012 0.74065 0.98347 1.08742 1.48148 1.09184 1.28816 1.24201 1.27775 0.87736 1.00122 0.98120 1.75004 1.16696 1.11717 1.11958 1.78694 1.11581 1.09812 1.07127 1.79028 0.95601 1.13814 1.16522 1.46159 1.17579 1.59568 1.16081 1.20288 0.80708 0.77466 0.89627 1.90730 1.50134 1.57061 1.40056 1.23554 1.07170 1.02828 0.97059 1.85390 1.06318 1.70876 1.20515 1.22851 1.03955 1.42229 0.99517 0.90952 1.24990 0.94812 0.95525 0.98197 1.70008 1.05015 1.40843 1.34329 0.86177 0.77679 0.79358 0.82356 1.20248 1.20707 1.19686 0.93473 0.91707 0.91972 0.91123 0.91601 0.89647 0.90312 0.75541 0.83620 0.84297 0.74768 0.76745 0.89275 0.89348 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.51 37.15 0.32 -1.43 16 2 C -0.13 -1.11 5.61 -26.73 -0.15 -1.26 16 3 C 0.13 1.07 2.42 -67.93 -0.16 0.91 16 4 H 0.10 0.91 7.58 -51.93 -0.39 0.52 16 5 C 0.11 0.72 5.23 -4.04 -0.02 0.70 16 6 N -0.72 -3.72 5.39 -60.30 -0.32 -4.04 16 7 C 0.50 3.40 7.85 -10.98 -0.09 3.31 16 8 O -0.51 -6.06 15.71 5.55 0.09 -5.97 16 9 C 0.09 0.30 6.96 -5.20 -0.04 0.27 16 10 N -0.30 -2.27 3.19 -63.74 -0.20 -2.47 16 11 C 0.16 1.04 12.79 -90.39 -1.16 -0.12 16 12 N -0.31 -3.40 12.36 29.59 0.37 -3.04 16 13 N -0.08 -1.04 13.43 60.35 0.81 -0.23 16 14 N -0.06 -0.76 12.30 60.35 0.74 -0.02 16 15 N -0.74 -6.85 4.47 -53.80 -0.24 -7.09 16 16 C 0.53 7.78 6.42 -10.98 -0.07 7.71 16 17 O -0.51 -9.23 13.00 5.56 0.07 -9.16 16 18 C -0.16 -2.67 6.16 36.01 0.22 -2.45 16 19 S -0.06 -1.42 20.57 -107.50 -2.21 -3.63 16 20 C -0.54 -14.38 9.50 30.94 0.29 -14.09 16 21 H 0.07 1.84 7.80 -52.49 -0.41 1.43 16 22 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 23 N -0.87 -24.98 13.22 55.49 0.73 -24.25 16 24 Si 0.92 20.46 29.55 -169.99 -5.02 15.44 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.95 5.64 -51.93 -0.29 0.66 16 30 H 0.06 0.81 7.85 -51.93 -0.41 0.40 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.41 1.49 8.14 -40.82 -0.33 1.16 16 36 H 0.15 -0.19 8.08 -51.93 -0.42 -0.61 16 37 H 0.14 0.15 8.14 -51.93 -0.42 -0.27 16 38 H 0.24 0.12 8.06 -52.49 -0.42 -0.30 16 39 H 0.40 2.86 8.60 -40.82 -0.35 2.51 16 40 H 0.09 1.46 8.14 -51.92 -0.42 1.04 16 41 H 0.09 1.36 8.14 -51.91 -0.42 0.94 16 42 H 0.27 7.22 8.31 -40.82 -0.34 6.89 16 LS Contribution 376.64 15.07 5.68 5.68 Total: -1.00 -39.39 376.64 -6.01 -45.40 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -5.55 Total: -2.08 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -0.95 Total: -4.52 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 1.88 Total: -41.14 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.16 Total: -15.14 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.21 Total: -3.63 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -39.39 -6.01 -45.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531069374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.609 kcal (2) G-P(sol) polarization free energy of solvation -39.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds