Wall clock time and date at job start Wed Apr 1 2020 00:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46977 * 2 1 4 4 H 1.09001 * 109.46484 * 304.99742 * 3 2 1 5 5 C 1.52994 * 109.46957 * 185.00245 * 3 2 1 6 6 N 1.46499 * 109.46872 * 185.00007 * 5 3 2 7 7 C 1.34781 * 120.00493 * 180.02562 * 6 5 3 8 8 O 1.21537 * 119.99281 * 359.97438 * 7 6 5 9 9 C 1.47998 * 120.00466 * 179.97438 * 7 6 5 10 10 N 1.34187 * 126.70008 * 359.97203 * 9 7 6 11 11 N 1.28981 * 107.25337 * 179.76380 * 10 9 7 12 12 N 1.28715 * 108.98695 * 0.42358 * 11 10 9 13 13 C 1.46506 * 125.32106 * 179.83101 * 12 11 10 14 14 N 1.28866 * 109.35980 * 359.56487 * 12 11 10 15 15 N 1.46494 * 109.47001 * 64.99606 * 3 2 1 16 16 C 1.34778 * 120.00515 * 274.99948 * 15 3 2 17 17 O 1.21286 * 119.99329 * 0.02562 * 16 15 3 18 18 C 1.50692 * 120.00372 * 180.02562 * 16 15 3 19 19 S 1.80997 * 109.47344 * 180.02562 * 18 16 15 20 20 C 1.76192 * 100.00313 * 180.02562 * 19 18 16 21 21 H 1.08003 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00092 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99811 * 179.97438 * 22 20 19 24 24 Si 1.86791 * 120.00053 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.47148 * 90.00246 * 24 22 20 26 26 H 1.48503 * 109.47318 * 209.99797 * 24 22 20 27 27 H 1.48497 * 109.47314 * 330.00093 * 24 22 20 28 28 H 1.09003 * 109.46570 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47435 * 299.99851 * 1 2 3 30 30 H 1.08997 * 109.47371 * 60.00223 * 1 2 3 31 31 H 1.08996 * 109.47435 * 240.00148 * 2 1 3 32 32 H 1.09006 * 109.47255 * 119.99549 * 2 1 3 33 33 H 1.08997 * 109.47466 * 64.99866 * 5 3 2 34 34 H 1.09007 * 109.47141 * 304.99012 * 5 3 2 35 35 H 0.97005 * 120.00374 * 359.97438 * 6 5 3 36 36 H 1.09001 * 109.47060 * 269.69955 * 13 12 11 37 37 H 1.09004 * 109.47073 * 29.69444 * 13 12 11 38 38 H 1.09000 * 109.47212 * 149.69527 * 13 12 11 39 39 H 0.97003 * 120.00110 * 95.00375 * 15 3 2 40 40 H 1.08999 * 109.47408 * 300.00434 * 18 16 15 41 41 H 1.08999 * 109.47233 * 60.00436 * 18 16 15 42 42 H 0.97002 * 119.99805 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5647 1.4444 -0.1258 6 7 4.0629 2.8169 -0.0060 7 6 5.3855 3.0633 -0.0869 8 8 6.1649 2.1467 -0.2588 9 6 5.8887 4.4499 0.0335 10 7 5.1534 5.5562 0.2234 11 7 5.9697 6.5534 0.2776 12 7 7.1715 6.1198 0.1219 13 6 8.3781 6.9508 0.1189 14 7 7.1481 4.8398 -0.0253 15 7 1.6523 2.0975 1.2517 16 6 0.4350 2.6645 1.3669 17 8 -0.3397 2.6319 0.4342 18 6 0.0365 3.3387 2.6543 19 16 -1.6426 3.9960 2.4966 20 6 -1.8438 4.7084 4.0955 21 1 -1.0434 4.6482 4.8181 22 6 -3.0313 5.3461 4.4267 23 7 -3.1817 5.8779 5.6214 24 14 -4.4159 5.4496 3.1772 25 1 -5.3011 4.2658 3.3200 26 1 -5.2027 6.6871 3.4115 27 1 -3.8448 5.4782 1.8067 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8498 1.0378 -1.0961 34 1 3.9953 0.8313 0.6660 35 1 3.4408 3.5485 0.1308 36 1 8.5930 7.2756 -0.8992 37 1 8.2199 7.8233 0.7528 38 1 9.2190 6.3719 0.5008 39 1 2.2718 2.1233 1.9978 40 1 0.0678 2.6147 3.4685 41 1 0.7278 4.1542 2.8665 42 1 -4.0115 6.3239 5.8527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001531407606.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:55:25 Heat of formation + Delta-G solvation = 58.081136 kcal Electronic energy + Delta-G solvation = -26775.476893 eV Core-core repulsion = 22727.560833 eV Total energy + Delta-G solvation = -4047.916060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.126 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.82962 -40.32271 -39.46390 -36.63845 -35.69791 -34.23375 -33.60272 -32.52944 -32.42291 -30.01384 -29.25683 -28.27075 -25.71656 -25.57373 -23.78104 -23.08379 -21.66069 -21.18319 -20.47860 -18.96378 -18.05433 -17.86541 -17.34793 -16.80832 -16.51339 -16.09102 -15.50228 -15.40692 -14.96158 -14.65350 -14.49805 -14.21030 -14.06343 -13.80888 -13.69117 -13.54062 -13.28401 -13.05120 -12.78763 -12.56964 -12.41703 -11.88202 -11.58706 -11.54954 -11.53075 -11.33336 -11.25358 -11.00717 -10.86501 -10.83743 -10.75961 -10.58261 -9.85632 -9.62832 -9.48450 -9.03008 -8.98220 -8.49895 -6.90809 -6.28272 -3.99746 0.55182 1.04418 1.29189 2.38200 2.68300 2.74967 2.93253 3.27291 3.33758 3.50671 3.55410 3.63572 3.68462 4.27029 4.28577 4.33511 4.40480 4.60675 4.72938 4.77701 4.80172 4.92950 5.10923 5.14529 5.15529 5.21376 5.31073 5.40902 5.50816 5.67958 5.74043 5.77060 5.89420 5.99135 6.02393 6.15472 6.47421 6.54835 6.90033 7.53998 7.54481 7.77521 7.94832 8.42668 8.45256 9.17929 10.81074 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.010150 B = 0.002772 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.846085 B =10097.406404 C =12384.165901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.134 3.866 4 H 0.099 0.901 5 C 0.114 3.886 6 N -0.704 5.704 7 C 0.620 3.380 8 O -0.509 6.509 9 C 0.125 3.875 10 N -0.248 5.248 11 N -0.049 5.049 12 N -0.134 5.134 13 C 0.091 3.909 14 N -0.248 5.248 15 N -0.735 5.735 16 C 0.533 3.467 17 O -0.509 6.509 18 C -0.126 4.126 19 S -0.139 6.139 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.417 0.583 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.400 0.600 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.346 -4.209 -12.330 26.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.029 3.971 4 H 0.117 0.883 5 C -0.010 4.010 6 N -0.358 5.358 7 C 0.400 3.600 8 O -0.380 6.380 9 C -0.159 4.159 10 N -0.123 5.123 11 N -0.043 5.043 12 N -0.047 5.047 13 C -0.048 4.048 14 N -0.102 5.102 15 N -0.391 5.391 16 C 0.319 3.681 17 O -0.383 6.383 18 C -0.277 4.277 19 S 0.087 5.913 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.254 0.746 36 H 0.125 0.875 37 H 0.137 0.863 38 H 0.133 0.867 39 H 0.234 0.766 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.512 -4.202 -13.820 26.747 hybrid contribution 0.381 0.267 1.284 1.366 sum 22.893 -3.935 -12.535 26.395 Atomic orbital electron populations 1.21804 0.93988 1.00794 1.03822 1.21879 0.97838 0.94674 1.02407 1.21273 0.91945 0.95000 0.88926 0.88307 1.21853 0.93160 0.82049 1.03928 1.45685 1.06317 1.11191 1.72608 1.16023 0.82881 0.83306 0.77803 1.90867 1.55947 1.43177 1.48004 1.25217 0.86703 0.97196 1.06745 1.76217 1.24906 0.95296 1.15853 1.79016 0.88176 1.21942 1.15151 1.50304 1.09190 1.03575 1.41645 1.22599 0.81129 0.94526 1.06585 1.75061 1.21920 0.94974 1.18234 1.46085 1.17433 1.59369 1.16197 1.20223 0.80876 0.77435 0.89526 1.90719 1.50340 1.57258 1.40016 1.23294 1.03936 1.03062 0.97374 1.84755 1.11926 1.72145 1.22457 1.22319 1.05514 1.41655 0.97368 0.89428 1.24719 0.97831 0.93583 0.95216 1.69942 1.26839 1.35584 1.19382 0.86733 0.82785 0.78539 0.83770 1.19257 1.19992 1.15877 0.93500 0.91758 0.91994 0.90991 0.91499 0.89200 0.89974 0.74639 0.87494 0.86349 0.86679 0.76559 0.88602 0.88425 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.51 37.16 0.32 -1.47 16 2 C -0.13 -1.16 5.61 -26.73 -0.15 -1.31 16 3 C 0.13 1.25 2.41 -67.93 -0.16 1.09 16 4 H 0.10 1.08 7.58 -51.93 -0.39 0.68 16 5 C 0.11 0.91 5.23 -4.05 -0.02 0.89 16 6 N -0.70 -6.67 5.39 -61.20 -0.33 -7.00 16 7 C 0.62 7.22 7.84 -12.26 -0.10 7.13 16 8 O -0.51 -7.09 17.10 5.33 0.09 -7.00 16 9 C 0.13 1.50 8.14 -156.25 -1.27 0.22 16 10 N -0.25 -3.05 12.26 32.09 0.39 -2.65 16 11 N -0.05 -0.53 13.23 60.35 0.80 0.26 16 12 N -0.13 -1.14 4.39 -16.64 -0.07 -1.21 16 13 C 0.09 0.19 11.62 59.85 0.70 0.89 16 14 N -0.25 -2.73 12.16 32.11 0.39 -2.34 16 15 N -0.74 -8.04 4.47 -53.81 -0.24 -8.28 16 16 C 0.53 8.45 6.42 -10.99 -0.07 8.37 16 17 O -0.51 -9.68 13.00 5.55 0.07 -9.61 16 18 C -0.13 -2.31 6.16 36.00 0.22 -2.09 16 19 S -0.14 -3.42 18.55 -107.50 -1.99 -5.42 16 20 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 21 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 22 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 23 N -0.88 -26.54 13.97 55.49 0.78 -25.77 16 24 Si 0.86 21.66 27.74 -169.99 -4.71 16.94 16 25 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.23 -5.90 6.74 56.52 0.38 -5.52 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.96 5.64 -51.93 -0.29 0.67 16 30 H 0.06 0.83 7.85 -51.93 -0.41 0.42 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.42 4.03 7.89 -40.82 -0.32 3.70 16 36 H 0.11 0.02 8.14 -51.93 -0.42 -0.40 16 37 H 0.12 0.02 8.14 -51.93 -0.42 -0.40 16 38 H 0.11 0.06 8.14 -51.93 -0.42 -0.37 16 39 H 0.40 3.58 8.60 -40.82 -0.35 3.23 16 40 H 0.10 1.66 8.14 -51.92 -0.42 1.23 16 41 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 42 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 376.01 15.07 5.67 5.67 Total: -1.00 -37.39 376.01 -5.06 -42.45 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.57 Total: 2.11 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -0.32 Total: 1.85 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 1.71 Total: -46.99 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.16 Total: -16.61 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -1.99 Total: -5.42 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.39 -5.06 -42.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531407606.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.529 kcal (2) G-P(sol) polarization free energy of solvation -37.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds