Wall clock time and date at job start Wed Apr 1 2020 00:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46651 * 2 1 4 4 H 1.08998 * 109.47206 * 55.00366 * 3 2 1 5 5 C 1.53002 * 109.46725 * 175.00028 * 3 2 1 6 6 N 1.46498 * 109.47064 * 175.00396 * 5 3 2 7 7 C 1.34776 * 119.99900 * 180.02562 * 6 5 3 8 8 O 1.21528 * 120.00396 * 359.97438 * 7 6 5 9 9 C 1.48010 * 119.99782 * 179.97438 * 7 6 5 10 10 N 1.34188 * 126.70117 * 359.97438 * 9 7 6 11 11 N 1.28980 * 107.25346 * 179.76171 * 10 9 7 12 12 N 1.28715 * 108.98720 * 0.39453 * 11 10 9 13 13 C 1.46506 * 125.32097 * 179.86551 * 12 11 10 14 14 N 1.28866 * 109.35987 * 359.59465 * 12 11 10 15 15 N 1.46497 * 109.47378 * 294.99779 * 3 2 1 16 16 C 1.34770 * 120.00151 * 85.00142 * 15 3 2 17 17 O 1.21289 * 119.99829 * 0.02562 * 16 15 3 18 18 C 1.50696 * 120.00649 * 180.02562 * 16 15 3 19 19 S 1.80999 * 109.47666 * 180.02562 * 18 16 15 20 20 C 1.76198 * 99.99832 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00516 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99836 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99973 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00063 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46954 * 90.00462 * 24 22 20 26 26 H 1.48505 * 109.47013 * 210.00319 * 24 22 20 27 27 H 1.48492 * 109.47356 * 330.00251 * 24 22 20 28 28 H 1.08994 * 109.47169 * 299.99869 * 1 2 3 29 29 H 1.09005 * 109.46776 * 60.00218 * 1 2 3 30 30 H 1.09001 * 109.46888 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47169 * 240.00131 * 2 1 3 32 32 H 1.08998 * 109.46952 * 120.00121 * 2 1 3 33 33 H 1.09000 * 109.47441 * 54.99697 * 5 3 2 34 34 H 1.09000 * 109.46907 * 294.99938 * 5 3 2 35 35 H 0.97005 * 120.00365 * 359.97438 * 6 5 3 36 36 H 1.09001 * 109.47060 * 269.69410 * 13 12 11 37 37 H 1.09004 * 109.47073 * 29.68898 * 13 12 11 38 38 H 1.09000 * 109.47212 * 149.68981 * 13 12 11 39 39 H 0.96997 * 120.00105 * 265.00678 * 15 3 2 40 40 H 1.09000 * 109.46816 * 300.00293 * 18 16 15 41 41 H 1.09001 * 109.47173 * 59.99763 * 18 16 15 42 42 H 0.97002 * 119.99994 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 7 4.0630 2.8169 0.0061 7 6 5.3857 3.0630 0.0859 8 8 6.1651 2.1466 0.2577 9 6 5.8890 4.4496 -0.0355 10 7 5.1538 5.5558 -0.2264 11 7 5.9693 6.5541 -0.2713 12 7 7.1720 6.1192 -0.1259 13 6 8.3786 6.9502 -0.1235 14 7 7.1485 4.8394 0.0227 15 7 1.6524 2.0975 -1.2518 16 6 0.4352 2.6644 -1.3670 17 8 -0.3393 2.6326 -0.4341 18 6 0.0362 3.3377 -2.6548 19 16 -1.6422 3.9965 -2.4966 20 6 -1.8438 4.7074 -4.0961 21 1 -1.0437 4.6466 -4.8189 22 6 -3.0311 5.3458 -4.4272 23 7 -4.0061 5.4204 -3.5460 24 14 -3.2446 6.1001 -6.1226 25 1 -3.8204 5.0890 -7.0453 26 1 -4.1591 7.2668 -6.0337 27 1 -1.9242 6.5443 -6.6367 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.9954 0.8312 -0.6659 34 1 3.8498 1.0378 1.0960 35 1 3.4410 3.5484 -0.1314 36 1 8.7623 7.0366 -1.1401 37 1 8.1362 7.9417 0.2589 38 1 9.1351 6.4904 0.5126 39 1 2.2719 2.1232 -1.9977 40 1 0.7276 4.1530 -2.8679 41 1 0.0673 2.6130 -3.4684 42 1 -4.8357 5.8668 -3.7773 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001531407608.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:55:29 Heat of formation + Delta-G solvation = 57.847143 kcal Electronic energy + Delta-G solvation = -26725.643561 eV Core-core repulsion = 22677.717354 eV Total energy + Delta-G solvation = -4047.926207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.126 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -44.81567 -40.26476 -39.37756 -36.55520 -35.68457 -34.18024 -33.58811 -32.43605 -32.40166 -29.96226 -29.16687 -28.19119 -25.68002 -25.44371 -23.74632 -23.04971 -21.58557 -21.13140 -20.37513 -18.92981 -18.04108 -17.83539 -17.33420 -16.70402 -16.47623 -16.00887 -15.45692 -15.30564 -14.79503 -14.61321 -14.48118 -14.23034 -14.05899 -13.80085 -13.60240 -13.47704 -13.18470 -13.07092 -12.55791 -12.51357 -12.32111 -11.76129 -11.56198 -11.51887 -11.48203 -11.24651 -11.05375 -11.01065 -10.82303 -10.80297 -10.74878 -10.71639 -9.80362 -9.57923 -9.36767 -9.06007 -8.91131 -8.23042 -6.48546 -6.20967 -3.90975 0.56612 1.06187 1.30476 2.41173 2.70965 3.00464 3.06524 3.23057 3.28316 3.32226 3.57372 3.66284 3.72502 4.21320 4.29384 4.32909 4.41736 4.61002 4.81004 4.83997 4.99008 5.13126 5.14469 5.16793 5.20645 5.34203 5.42826 5.52060 5.60800 5.75292 5.83244 5.88927 5.95026 6.06061 6.15473 6.23398 6.56830 6.63768 6.93548 7.57239 7.60556 7.65190 7.79182 8.36144 8.58618 9.24729 10.86410 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.009257 B = 0.002767 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.921511 B =10117.499221 C =12690.573908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C 0.134 3.866 4 H 0.099 0.901 5 C 0.114 3.886 6 N -0.704 5.704 7 C 0.620 3.380 8 O -0.509 6.509 9 C 0.126 3.874 10 N -0.247 5.247 11 N -0.049 5.049 12 N -0.135 5.135 13 C 0.091 3.909 14 N -0.248 5.248 15 N -0.737 5.737 16 C 0.534 3.466 17 O -0.507 6.507 18 C -0.155 4.155 19 S -0.057 6.057 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.417 0.583 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.399 0.601 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.734 -3.010 7.524 26.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.028 3.972 4 H 0.117 0.883 5 C -0.010 4.010 6 N -0.357 5.357 7 C 0.399 3.601 8 O -0.381 6.381 9 C -0.158 4.158 10 N -0.122 5.122 11 N -0.043 5.043 12 N -0.048 5.048 13 C -0.048 4.048 14 N -0.102 5.102 15 N -0.393 5.393 16 C 0.321 3.679 17 O -0.381 6.381 18 C -0.306 4.306 19 S 0.169 5.831 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.254 0.746 36 H 0.125 0.875 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.233 0.767 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 23.826 -3.036 9.194 25.718 hybrid contribution 0.928 0.572 -2.626 2.843 sum 24.755 -2.464 6.567 25.729 Atomic orbital electron populations 1.21808 0.93915 1.00758 1.03940 1.21876 0.97898 0.94697 1.02287 1.21261 0.91822 0.95000 0.89097 0.88318 1.21857 0.93278 0.81985 1.03859 1.45691 1.06289 1.11249 1.72493 1.16025 0.82903 0.83284 0.77841 1.90862 1.55954 1.43170 1.48076 1.25235 0.86697 0.97242 1.06647 1.76223 1.24914 0.95269 1.15820 1.79014 0.88145 1.21932 1.15243 1.50303 1.09127 1.03565 1.41758 1.22593 0.81090 0.94529 1.06613 1.75060 1.21928 0.95020 1.18212 1.46123 1.17556 1.59566 1.16048 1.20249 0.80717 0.77346 0.89619 1.90723 1.50281 1.57073 1.40021 1.23549 1.07113 1.02864 0.97065 1.85361 1.06354 1.70881 1.20479 1.22866 1.03882 1.42081 0.99496 0.90983 1.24982 0.94875 0.95568 0.98139 1.70015 1.05014 1.41105 1.34171 0.86182 0.78231 0.78669 0.82510 1.20308 1.20766 1.19699 0.91943 0.91688 0.93549 0.91597 0.91066 0.90043 0.89241 0.74605 0.87472 0.86393 0.86706 0.76744 0.89206 0.89340 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.52 37.16 0.32 -1.58 16 2 C -0.13 -1.24 5.61 -26.73 -0.15 -1.39 16 3 C 0.13 1.34 2.42 -67.93 -0.16 1.17 16 4 H 0.10 1.15 7.58 -51.93 -0.39 0.76 16 5 C 0.11 0.96 5.23 -4.04 -0.02 0.94 16 6 N -0.70 -6.95 5.39 -61.20 -0.33 -7.28 16 7 C 0.62 7.39 7.84 -12.25 -0.10 7.30 16 8 O -0.51 -7.23 17.10 5.34 0.09 -7.14 16 9 C 0.13 1.53 8.14 -156.24 -1.27 0.26 16 10 N -0.25 -3.09 12.26 32.10 0.39 -2.70 16 11 N -0.05 -0.55 13.23 60.35 0.80 0.25 16 12 N -0.13 -1.15 4.39 -16.64 -0.07 -1.23 16 13 C 0.09 0.20 11.62 59.85 0.70 0.89 16 14 N -0.25 -2.77 12.16 32.11 0.39 -2.38 16 15 N -0.74 -8.60 4.47 -53.81 -0.24 -8.84 16 16 C 0.53 8.99 6.42 -10.99 -0.07 8.92 16 17 O -0.51 -10.26 13.00 5.55 0.07 -10.19 16 18 C -0.16 -2.99 6.16 36.00 0.22 -2.77 16 19 S -0.06 -1.51 20.57 -107.50 -2.21 -3.73 16 20 C -0.53 -15.09 9.50 30.94 0.29 -14.79 16 21 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.02 13.22 55.49 0.73 -25.28 16 24 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 H 0.06 0.89 7.85 -51.93 -0.41 0.48 16 29 H 0.06 1.03 5.65 -51.93 -0.29 0.74 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.42 4.23 7.89 -40.82 -0.32 3.91 16 36 H 0.11 0.04 8.14 -51.93 -0.42 -0.38 16 37 H 0.12 0.02 8.14 -51.93 -0.42 -0.41 16 38 H 0.11 0.06 8.14 -51.93 -0.42 -0.37 16 39 H 0.40 3.82 8.60 -40.82 -0.35 3.47 16 40 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 41 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 378.70 15.07 5.71 5.71 Total: -1.00 -37.57 378.70 -5.57 -43.15 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.54 Total: 2.37 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -0.34 Total: 0.94 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 1.67 Total: -47.46 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.16 Total: -17.32 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.57 -5.57 -43.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531407608.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.993 kcal (2) G-P(sol) polarization free energy of solvation -37.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds