Wall clock time and date at job start Wed Apr 1 2020 02:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46908 * 2 1 4 4 C 1.52997 * 109.46884 * 240.00271 * 2 1 3 5 5 C 1.53004 * 109.47000 * 174.99897 * 4 2 1 6 6 N 1.46499 * 109.47198 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99665 * 180.27868 * 6 5 4 8 8 O 1.21713 * 120.00187 * 359.72121 * 7 6 5 9 9 C 1.46555 * 119.99518 * 179.72450 * 7 6 5 10 10 C 1.37928 * 126.22873 * 179.97438 * 9 7 6 11 11 C 1.39744 * 107.12371 * 179.97438 * 10 9 7 12 12 C 1.35667 * 107.88568 * 0.02562 * 11 10 9 13 13 Cl 1.73598 * 125.57687 * 180.02562 * 12 11 10 14 14 N 1.35583 * 108.84503 * 359.72696 * 12 11 10 15 15 H 0.96994 * 125.69583 * 180.29734 * 14 12 11 16 16 N 1.46896 * 109.46921 * 119.99672 * 2 1 3 17 17 C 1.46894 * 111.00613 * 275.00115 * 16 2 1 18 18 C 1.50702 * 109.47540 * 180.02562 * 17 16 2 19 19 O 1.21293 * 119.99262 * 0.02562 * 18 17 16 20 20 N 1.34770 * 119.99842 * 180.02562 * 18 17 16 21 21 C 1.37103 * 119.99503 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99951 * 359.97438 * 21 20 18 23 23 C 1.38944 * 119.99607 * 179.97438 * 21 20 18 24 24 N 1.31416 * 120.00597 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 120.00027 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46975 * 59.99967 * 25 23 21 27 27 H 1.48491 * 109.47347 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47042 * 300.00215 * 25 23 21 29 29 H 1.09001 * 109.46908 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47017 * 300.00188 * 1 2 3 31 31 H 1.08999 * 109.47108 * 59.99582 * 1 2 3 32 32 H 1.08995 * 109.47672 * 55.00228 * 4 2 1 33 33 H 1.09006 * 109.46819 * 294.99658 * 4 2 1 34 34 H 1.09009 * 109.46730 * 59.99606 * 5 4 2 35 35 H 1.08998 * 109.46846 * 300.00150 * 5 4 2 36 36 H 0.97001 * 119.99790 * 359.97438 * 6 5 4 37 37 H 1.08004 * 126.44083 * 0.04243 * 10 9 7 38 38 H 1.08001 * 126.06270 * 180.02562 * 11 10 9 39 39 H 1.00899 * 110.99669 * 38.96314 * 16 2 1 40 40 H 1.09007 * 109.46800 * 300.00410 * 17 16 2 41 41 H 1.08999 * 109.46743 * 60.00011 * 17 16 2 42 42 H 0.96998 * 120.00524 * 359.97438 * 20 18 17 43 43 H 0.97000 * 120.00462 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3138 6 7 4.0532 -1.3043 -2.5096 7 6 5.3746 -1.3449 -2.7720 8 8 6.1617 -0.8031 -2.0181 9 6 5.8636 -2.0414 -3.9651 10 6 7.1808 -2.1619 -4.3562 11 6 7.1917 -2.8997 -5.5430 12 6 5.9079 -3.2112 -5.8518 13 17 5.3951 -4.1223 -7.2376 14 7 5.0916 -2.7001 -4.8976 15 1 4.1254 -2.7827 -4.8758 16 7 2.0197 -0.6924 1.1995 17 6 2.0825 0.2226 2.3469 18 6 2.5885 -0.5215 3.5558 19 8 2.8696 -1.6983 3.4697 20 7 2.7286 0.1206 4.7324 21 6 3.1894 -0.5563 5.8320 22 1 3.4398 -1.6041 5.7554 23 6 3.3344 0.1058 7.0449 24 7 3.0293 1.3806 7.1383 25 14 3.9616 -0.8166 8.5434 26 1 5.3179 -1.3525 8.2629 27 1 4.0245 0.1083 9.7035 28 1 3.0406 -1.9389 8.8552 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8899 32 1 1.6055 -0.2617 -2.1370 33 1 1.7516 -1.7715 -1.2056 34 1 3.9995 -1.0727 -0.4259 35 1 3.8532 0.4371 -1.3573 36 1 3.4259 -1.7364 -3.1102 37 1 8.0420 -1.7622 -3.8414 38 1 8.0671 -3.1735 -6.1133 39 1 1.4496 -1.4979 1.4099 40 1 2.7589 1.0462 2.1182 41 1 1.0871 0.6163 2.5525 42 1 2.5041 1.0617 4.8011 43 1 3.1308 1.8429 7.9850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649443294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:05 Heat of formation + Delta-G solvation = -67.956379 kcal Electronic energy + Delta-G solvation = -25997.317789 eV Core-core repulsion = 21909.599874 eV Total energy + Delta-G solvation = -4087.717915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.43799 -40.36963 -40.13461 -38.31503 -37.75461 -36.14543 -35.80380 -33.33723 -32.81664 -32.23468 -30.73746 -29.24465 -27.95481 -25.84109 -24.83024 -23.18740 -21.91635 -21.69198 -21.30805 -21.08625 -20.10829 -19.88415 -17.76972 -17.33231 -16.97051 -16.89882 -16.73324 -16.38138 -16.21126 -15.76155 -15.36320 -15.27728 -15.21001 -15.00131 -14.50079 -14.25546 -14.06878 -14.04359 -13.77574 -13.55267 -13.49181 -13.10219 -12.85750 -12.77570 -12.66814 -12.44433 -12.32462 -12.28280 -12.20777 -12.11011 -11.75045 -11.50589 -11.33297 -10.34762 -10.27596 -10.21388 -10.01891 -9.28435 -9.23636 -8.46945 -5.95809 0.18597 0.51491 1.39027 1.40727 1.45881 1.51749 1.98690 2.05609 2.19366 2.23468 2.28802 2.95207 3.20265 3.55389 3.73630 3.84417 4.07981 4.11272 4.21118 4.22409 4.34079 4.45859 4.49064 4.54037 4.62179 4.73221 4.75260 4.89993 5.00657 5.04139 5.17715 5.19935 5.29041 5.34073 5.40069 5.40960 5.62367 5.91858 6.07659 6.14510 6.43618 6.47354 6.59932 7.06532 7.12193 7.56196 8.11719 8.70146 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.016056 B = 0.001751 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.442688 B =15987.292842 C =17048.320454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.083 3.917 3 H 0.084 0.916 4 C -0.103 4.103 5 C 0.127 3.873 6 N -0.712 5.712 7 C 0.583 3.417 8 O -0.571 6.571 9 C -0.047 4.047 10 C -0.111 4.111 11 C -0.181 4.181 12 C 0.091 3.909 13 Cl 0.002 6.998 14 N -0.518 5.518 15 H 0.433 0.567 16 N -0.678 5.678 17 C 0.067 3.933 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.574 5.574 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.274 1.274 27 H -0.269 1.269 28 H -0.271 1.271 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.410 0.590 37 H 0.154 0.846 38 H 0.174 0.826 39 H 0.345 0.655 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.396 0.604 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.952 -4.218 -30.593 31.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.027 4.027 3 H 0.102 0.898 4 C -0.141 4.141 5 C 0.004 3.996 6 N -0.363 5.363 7 C 0.371 3.629 8 O -0.451 6.451 9 C -0.160 4.160 10 C -0.138 4.138 11 C -0.206 4.206 12 C -0.052 4.052 13 Cl 0.030 6.970 14 N -0.120 5.120 15 H 0.274 0.726 16 N -0.310 5.310 17 C -0.066 4.066 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.211 5.211 21 C -0.465 4.465 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.199 1.199 27 H -0.194 1.194 28 H -0.196 1.196 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.247 0.753 37 H 0.172 0.828 38 H 0.192 0.808 39 H 0.164 0.836 40 H 0.117 0.883 41 H 0.085 0.915 42 H 0.230 0.770 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.803 -4.451 -30.172 30.551 hybrid contribution -1.366 -0.078 1.038 1.717 sum -3.169 -4.529 -29.134 29.654 Atomic orbital electron populations 1.22431 0.95343 1.02675 1.03003 1.21638 0.93816 0.98138 0.89114 0.89777 1.21706 0.92131 1.02328 0.97973 1.21292 0.95694 0.96459 0.86188 1.45768 1.06394 1.56674 1.27500 1.17235 0.82755 0.79299 0.83610 1.90886 1.56669 1.47841 1.49668 1.20222 0.92249 1.08703 0.94863 1.21524 0.95052 1.00479 0.96759 1.20953 0.95450 1.05118 0.99098 1.21170 0.90746 1.03253 0.90074 1.98426 1.91287 1.71077 1.36189 1.41868 1.10068 1.41751 1.18296 0.72605 1.60202 1.58641 1.09142 1.03057 1.21527 1.00919 0.95334 0.88787 1.20968 0.83388 0.88048 0.85210 1.90488 1.56662 1.18436 1.85469 1.41937 1.58325 1.12608 1.08253 1.19624 1.42278 0.95974 0.88609 0.90433 1.26040 0.97220 0.96650 1.01390 1.69664 1.48539 1.09658 1.28192 0.84997 0.78665 0.77876 0.76840 1.19931 1.19362 1.19579 0.92113 0.93233 0.89763 0.87910 0.90573 0.93131 0.92350 0.75345 0.82833 0.80826 0.83638 0.88325 0.91458 0.76998 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.71 9.16 71.98 0.66 -2.05 16 2 C 0.08 1.61 2.59 44.92 0.12 1.72 16 3 H 0.08 1.60 7.80 -2.39 -0.02 1.59 16 4 C -0.10 -1.57 5.01 30.59 0.15 -1.42 16 5 C 0.13 2.84 5.56 86.38 0.48 3.32 16 6 N -0.71 -13.06 5.55 -467.18 -2.59 -15.65 16 7 C 0.58 14.54 7.78 86.41 0.67 15.21 16 8 O -0.57 -20.19 16.88 -4.39 -0.07 -20.27 16 9 C -0.05 -0.91 7.06 40.30 0.28 -0.62 16 10 C -0.11 -2.15 10.65 22.56 0.24 -1.91 16 11 C -0.18 -2.63 10.78 22.04 0.24 -2.40 16 12 C 0.09 1.18 7.74 83.52 0.65 1.83 16 13 Cl 0.00 0.02 29.30 -2.72 -0.08 -0.06 16 14 N -0.52 -6.36 6.00 -174.61 -1.05 -7.41 16 15 H 0.43 2.52 8.19 -92.71 -0.76 1.76 16 16 N -0.68 -20.05 5.33 -495.58 -2.64 -22.69 16 17 C 0.07 2.26 5.97 85.56 0.51 2.78 16 18 C 0.44 21.09 7.82 87.66 0.69 21.78 16 19 O -0.62 -35.20 15.78 -3.07 -0.05 -35.25 16 20 N -0.57 -30.06 5.29 -306.99 -1.62 -31.69 16 21 C -0.34 -19.46 9.68 84.04 0.81 -18.65 16 22 H 0.08 4.80 7.16 -2.91 -0.02 4.77 16 23 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 24 N -0.92 -50.37 13.05 21.66 0.28 -50.09 16 25 Si 0.99 43.80 29.55 68.60 2.03 45.83 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 29 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 30 H 0.05 0.88 7.45 -2.39 -0.02 0.86 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.05 1.60 7.75 -2.38 -0.02 1.58 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.41 4.04 7.60 -92.71 -0.70 3.34 16 37 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 38 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.34 10.74 8.17 -89.69 -0.73 10.01 16 40 H 0.10 3.12 8.06 -2.38 -0.02 3.10 16 41 H 0.07 1.98 7.44 -2.39 -0.02 1.96 16 42 H 0.40 19.67 7.90 -92.71 -0.73 18.93 16 43 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -77.80 385.98 -1.66 -79.46 By element: Atomic # 1 Polarization: 40.31 SS G_CDS: -1.84 Total: 38.48 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: 5.97 Total: 19.33 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -7.62 Total: -127.52 kcal Atomic # 8 Polarization: -55.40 SS G_CDS: -0.12 Total: -55.52 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -0.08 Total: -0.06 kcal Total: -77.80 -1.66 -79.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649443294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.504 kcal (2) G-P(sol) polarization free energy of solvation -77.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds