Wall clock time and date at job start Wed Apr 1 2020 02:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.28867 * 2 1 4 4 C 1.54002 * 110.32720 * 122.13889 * 2 1 3 5 5 N 1.47491 * 107.08234 * 117.58178 * 4 2 1 6 6 C 1.34772 * 127.03337 * 205.47832 * 5 4 2 7 7 O 1.21589 * 119.99840 * 179.97438 * 6 5 4 8 8 C 1.47545 * 120.00229 * 359.97438 * 6 5 4 9 9 C 1.39923 * 120.18073 * 269.99905 * 8 6 5 10 10 F 1.35107 * 120.07292 * 0.02562 * 9 8 6 11 11 C 1.38172 * 119.85407 * 179.97438 * 9 8 6 12 12 C 1.38333 * 120.20916 * 0.02562 * 11 9 8 13 13 C 1.38441 * 120.36523 * 359.96935 * 12 11 9 14 14 F 1.35102 * 119.93001 * 180.02562 * 13 12 11 15 15 C 1.38448 * 120.14147 * 359.77336 * 13 12 11 16 16 F 1.35101 * 120.10826 * 180.27150 * 15 13 12 17 17 C 1.48117 * 105.93185 * 25.45161 * 5 4 2 18 18 C 1.54615 * 110.32322 * 237.75885 * 2 1 3 19 19 H 1.09003 * 110.74442 * 337.59808 * 18 2 1 20 20 C 1.53007 * 110.73770 * 100.92290 * 18 2 1 21 21 N 1.46497 * 109.46965 * 184.99669 * 20 18 2 22 22 C 1.36942 * 119.99698 * 179.97438 * 21 20 18 23 23 H 1.07990 * 120.00240 * 0.02562 * 22 21 20 24 24 C 1.38815 * 119.99935 * 179.97438 * 22 21 20 25 25 N 1.31622 * 119.99913 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00061 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47106 * 60.00283 * 26 24 22 28 28 H 1.48503 * 109.47200 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47148 * 300.00077 * 26 24 22 30 30 H 1.09001 * 109.47002 * 299.31194 * 1 2 3 31 31 H 1.08993 * 109.46955 * 59.31631 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.31460 * 1 2 3 33 33 H 1.08996 * 109.91578 * 236.94350 * 4 2 1 34 34 H 1.09000 * 109.91123 * 358.03725 * 4 2 1 35 35 H 1.07993 * 119.89274 * 180.02562 * 11 9 8 36 36 H 1.08003 * 119.81887 * 179.97438 * 12 11 9 37 37 H 1.09000 * 110.66742 * 79.14350 * 17 5 4 38 38 H 1.08999 * 110.66580 * 202.26450 * 17 5 4 39 39 H 1.08996 * 109.46930 * 304.99762 * 20 18 2 40 40 H 1.08992 * 109.47303 * 64.99794 * 20 18 2 41 41 H 0.96997 * 120.00765 * 0.02562 * 21 20 18 42 42 H 0.96996 * 120.00065 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7682 1.2228 5 7 2.8277 -1.9219 0.7101 6 6 3.0613 -3.0874 1.3451 7 8 3.7107 -3.9580 0.7984 8 6 2.5293 -3.3070 2.7036 9 6 3.2899 -2.9514 3.8229 10 9 4.5150 -2.4048 3.6631 11 6 2.7848 -3.1596 5.0921 12 6 1.5305 -3.7186 5.2590 13 6 0.7703 -4.0736 4.1577 14 9 -0.4538 -4.6184 4.3309 15 6 1.2597 -3.8667 2.8793 16 9 0.5151 -4.2084 1.8050 17 6 3.2836 -1.5376 -0.6458 18 6 2.0671 -0.7735 -1.2263 19 1 1.3174 -1.4699 -1.6022 20 6 2.5095 0.1941 -2.3260 21 7 2.9003 -0.5652 -3.5163 22 6 3.3343 0.0927 -4.6361 23 1 3.3889 1.1712 -4.6416 24 6 3.7051 -0.6267 -5.7639 25 7 3.6391 -1.9413 -5.7570 26 14 4.2979 0.2707 -7.2912 27 1 5.5070 1.0664 -6.9597 28 1 4.6297 -0.7177 -8.3486 29 1 3.2275 1.1768 -7.7796 30 1 -0.3633 0.5031 0.8961 31 1 -0.3633 0.5244 -0.8837 32 1 -0.3633 -1.0276 -0.0123 33 1 2.7182 -0.1229 1.8101 34 1 1.2335 -1.1130 1.8375 35 1 3.3711 -2.8850 5.9564 36 1 1.1420 -3.8789 6.2539 37 1 4.1553 -0.8858 -0.5882 38 1 3.5026 -2.4226 -1.2432 39 1 1.6851 0.8620 -2.5755 40 1 3.3583 0.7803 -1.9742 41 1 2.8509 -1.5339 -3.5116 42 1 3.8978 -2.4440 -6.5451 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672305416.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:58 Heat of formation + Delta-G solvation = -146.264413 kcal Electronic energy + Delta-G solvation = -30096.200729 eV Core-core repulsion = 25433.370482 eV Total energy + Delta-G solvation = -4662.830248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 14.28 seconds Orbital eigenvalues (eV) -50.79107 -50.29865 -49.83511 -41.55315 -39.84159 -38.97806 -36.50800 -34.37993 -33.11555 -32.68358 -31.27339 -30.65903 -27.71096 -27.28260 -25.68246 -24.66189 -24.13321 -22.69034 -21.29579 -21.13375 -19.60420 -19.26814 -19.17813 -18.81091 -18.10140 -17.61190 -17.35470 -17.22154 -16.74227 -16.65797 -16.41562 -16.22239 -15.81676 -15.66062 -15.53182 -15.40948 -15.18146 -14.91524 -14.49606 -14.26166 -14.12222 -13.73041 -13.56505 -13.42849 -13.29127 -13.06634 -12.98458 -12.91358 -12.72702 -12.52095 -12.21365 -11.98102 -11.84582 -11.63866 -11.53379 -11.39763 -10.93845 -10.45109 -9.98508 -9.91004 -9.01910 -7.95363 -5.25410 -0.64970 -0.49963 1.03546 1.45966 1.49803 1.54399 1.55946 1.88552 2.30925 2.55209 2.69589 2.95430 3.14838 3.36636 3.40071 3.43492 3.53881 3.57423 3.74204 4.05084 4.11647 4.14940 4.30754 4.38712 4.45236 4.46076 4.54685 4.56760 4.67947 4.71531 4.74512 4.79200 4.80236 4.90327 5.01411 5.13333 5.20526 5.28254 5.38685 5.45563 5.49584 6.19305 6.25554 6.65815 7.31438 8.07326 8.29068 9.28234 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.018618 B = 0.002652 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.570269 B =10557.317409 C =10774.505947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 H 0.113 0.887 4 C 0.101 3.899 5 N -0.606 5.606 6 C 0.572 3.428 7 O -0.573 6.573 8 C -0.183 4.183 9 C 0.145 3.855 10 F -0.127 7.127 11 C -0.103 4.103 12 C -0.050 4.050 13 C 0.061 3.939 14 F -0.124 7.124 15 C 0.105 3.895 16 F -0.132 7.132 17 C 0.116 3.884 18 C -0.092 4.092 19 H 0.064 0.936 20 C 0.166 3.834 21 N -0.749 5.749 22 C -0.244 4.244 23 H 0.082 0.918 24 C -0.080 4.080 25 N -0.973 5.973 26 Si 0.977 3.023 27 H -0.276 1.276 28 H -0.299 1.299 29 H -0.275 1.275 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.206 0.794 36 H 0.211 0.789 37 H 0.083 0.917 38 H 0.048 0.952 39 H 0.034 0.966 40 H 0.033 0.967 41 H 0.370 0.630 42 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.492 2.489 32.211 33.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.131 0.869 4 C -0.020 4.020 5 N -0.337 5.337 6 C 0.360 3.640 7 O -0.452 6.452 8 C -0.188 4.188 9 C 0.125 3.875 10 F -0.105 7.105 11 C -0.121 4.121 12 C -0.069 4.069 13 C 0.041 3.959 14 F -0.102 7.102 15 C 0.084 3.916 16 F -0.110 7.110 17 C -0.006 4.006 18 C -0.112 4.112 19 H 0.083 0.917 20 C 0.040 3.960 21 N -0.392 5.392 22 C -0.376 4.376 23 H 0.099 0.901 24 C -0.272 4.272 25 N -0.624 5.624 26 Si 0.805 3.195 27 H -0.202 1.202 28 H -0.225 1.225 29 H -0.201 1.201 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.223 0.777 36 H 0.228 0.772 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.201 0.799 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.129 2.118 31.829 32.687 hybrid contribution 0.366 -0.654 -2.179 2.304 sum -6.764 1.464 29.651 30.448 Atomic orbital electron populations 1.21830 0.92743 1.01660 1.03358 1.22102 0.97470 1.00123 0.91045 0.86899 1.22561 0.96118 0.86131 0.97185 1.48878 1.52311 1.14834 1.17690 1.17835 0.79873 0.80980 0.85354 1.90841 1.42174 1.44161 1.68064 1.19607 0.95849 1.09483 0.93825 1.17611 0.80714 0.96343 0.92881 1.91589 1.39838 1.82589 1.96462 1.21506 0.96343 0.98926 0.95339 1.21590 0.91999 0.93762 0.99501 1.17661 0.83727 1.02849 0.91683 1.91580 1.39596 1.83265 1.95773 1.17526 0.88989 1.01500 0.83607 1.91568 1.75290 1.89747 1.54402 1.22488 0.97868 0.98750 0.81495 1.22411 0.95953 0.97305 0.95538 0.91720 1.20791 0.97015 0.92977 0.85226 1.42646 1.79331 1.05685 1.11515 1.19640 1.34527 0.91895 0.91534 0.90054 1.25648 1.03564 0.96229 1.01740 1.69843 1.56220 1.06260 1.30106 0.85165 0.78460 0.77032 0.78827 1.20191 1.22517 1.20057 0.89530 0.92153 0.93908 0.88404 0.89287 0.77683 0.77200 0.89854 0.93303 0.94767 0.94959 0.79862 0.94126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 8.89 71.98 0.64 -1.98 16 2 C -0.09 -1.91 3.17 -9.90 -0.03 -1.94 16 3 H 0.11 2.02 7.85 -2.39 -0.02 2.00 16 4 C 0.10 2.08 6.41 86.53 0.55 2.64 16 5 N -0.61 -18.53 3.29 -813.12 -2.68 -21.21 16 6 C 0.57 19.49 6.61 86.70 0.57 20.06 16 7 O -0.57 -25.36 17.31 -4.00 -0.07 -25.43 16 8 C -0.18 -4.42 4.64 -20.02 -0.09 -4.52 16 9 C 0.14 2.45 7.29 22.66 0.17 2.62 16 10 F -0.13 -2.61 16.83 44.97 0.76 -1.86 16 11 C -0.10 -0.63 10.01 22.28 0.22 -0.41 16 12 C -0.05 -0.26 10.01 22.34 0.22 -0.03 16 13 C 0.06 0.88 7.29 22.37 0.16 1.04 16 14 F -0.12 -2.02 17.18 44.97 0.77 -1.25 16 15 C 0.10 2.34 7.30 22.71 0.17 2.51 16 16 F -0.13 -3.79 16.74 44.97 0.75 -3.04 16 17 C 0.12 4.13 6.45 86.73 0.56 4.69 16 18 C -0.09 -2.99 2.62 -9.58 -0.03 -3.02 16 19 H 0.06 2.38 7.86 -2.39 -0.02 2.36 16 20 C 0.17 6.42 5.58 86.38 0.48 6.90 16 21 N -0.75 -38.96 5.52 -343.46 -1.90 -40.86 16 22 C -0.24 -13.84 9.99 84.03 0.84 -13.00 16 23 H 0.08 4.33 7.83 -2.92 -0.02 4.30 16 24 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 25 N -0.97 -62.24 13.06 21.65 0.28 -61.95 16 26 Si 0.98 47.16 29.55 68.60 2.03 49.19 16 27 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 28 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 29 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.04 0.92 8.13 -2.39 -0.02 0.90 16 33 H 0.10 1.54 8.14 -2.39 -0.02 1.53 16 34 H 0.09 1.54 7.26 -2.39 -0.02 1.52 16 35 H 0.21 -0.43 8.06 -2.91 -0.02 -0.46 16 36 H 0.21 -0.80 8.06 -2.91 -0.02 -0.83 16 37 H 0.08 2.87 7.94 -2.39 -0.02 2.85 16 38 H 0.05 2.14 7.85 -2.39 -0.02 2.12 16 39 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.03 1.20 7.99 -2.39 -0.02 1.19 16 41 H 0.37 21.12 7.67 -92.71 -0.71 20.41 16 42 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -81.99 369.93 5.22 -76.77 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.36 Total: 18.33 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 4.91 Total: 11.30 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -4.29 Total: -124.02 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.07 Total: -25.43 kcal Atomic # 9 Polarization: -8.43 SS G_CDS: 2.28 Total: -6.14 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -81.99 5.22 -76.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672305416.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.498 kcal (2) G-P(sol) polarization free energy of solvation -81.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.29 seconds