Wall clock time and date at job start Wed Apr 1 2020 01:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47434 * 2 1 4 4 H 1.08999 * 109.46888 * 55.00148 * 3 2 1 5 5 C 1.53003 * 109.47014 * 174.99394 * 3 2 1 6 6 N 1.46499 * 109.46708 * 174.99880 * 5 3 2 7 7 C 1.34784 * 119.99893 * 180.02562 * 6 5 3 8 8 O 1.21283 * 119.99649 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.99774 * 179.72962 * 7 6 5 10 10 S 1.81008 * 109.46759 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99946 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99996 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00252 * 179.97438 * 11 10 9 14 14 N 1.31626 * 120.00327 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 119.99735 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47351 * 90.00094 * 15 13 11 17 17 H 1.48496 * 109.47299 * 210.00069 * 15 13 11 18 18 H 1.48507 * 109.47281 * 330.00181 * 15 13 11 19 19 N 1.46491 * 109.46969 * 294.99999 * 3 2 1 20 20 C 1.34776 * 120.00153 * 84.99920 * 19 3 2 21 21 O 1.21526 * 120.00370 * 0.02562 * 20 19 3 22 22 C 1.48012 * 119.99695 * 179.97438 * 20 19 3 23 23 N 1.34181 * 126.70162 * 0.02686 * 22 20 19 24 24 N 1.28976 * 107.25325 * 179.97438 * 23 22 20 25 25 N 1.28717 * 108.98788 * 0.02562 * 24 23 22 26 26 C 1.46508 * 125.31846 * 180.02562 * 25 24 23 27 27 N 1.28867 * 109.36071 * 359.72381 * 25 24 23 28 28 H 1.08997 * 109.47100 * 300.00763 * 1 2 3 29 29 H 1.09002 * 109.46547 * 59.99936 * 1 2 3 30 30 H 1.08996 * 109.47151 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47597 * 239.99813 * 2 1 3 32 32 H 1.09005 * 109.47041 * 119.99967 * 2 1 3 33 33 H 1.08998 * 109.46692 * 55.00382 * 5 3 2 34 34 H 1.08994 * 109.47584 * 295.00246 * 5 3 2 35 35 H 0.97005 * 120.00261 * 0.02562 * 6 5 3 36 36 H 1.09001 * 109.46809 * 299.99238 * 9 7 6 37 37 H 1.08993 * 109.47525 * 59.99679 * 9 7 6 38 38 H 0.97000 * 120.00223 * 180.02562 * 14 13 11 39 39 H 0.97006 * 119.99804 * 264.99213 * 19 3 2 40 40 H 1.08999 * 109.47118 * 89.97467 * 26 25 24 41 41 H 1.08998 * 109.46677 * 209.97321 * 26 25 24 42 42 H 1.09001 * 109.46924 * 329.97283 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1259 6 7 4.0631 2.8166 0.0061 7 6 5.3859 3.0628 0.0860 8 8 6.1636 2.1479 0.2567 9 6 5.8989 4.4738 -0.0433 10 16 7.7028 4.4759 0.1056 11 6 8.0230 6.1988 -0.0784 12 1 7.2046 6.8869 -0.2306 13 6 9.3270 6.6717 -0.0278 14 7 9.5661 7.9587 -0.1647 15 14 10.7425 5.4814 0.2347 16 1 11.2326 4.9972 -1.0808 17 1 11.8449 6.1733 0.9495 18 1 10.2752 4.3273 1.0442 19 7 1.6525 2.0974 -1.2517 20 6 0.4353 2.6644 -1.3669 21 8 -0.3408 2.6327 -0.4322 22 6 0.0440 3.3266 -2.6315 23 7 0.7897 3.4402 -3.7413 24 7 0.0857 4.0817 -4.6111 25 7 -1.0571 4.3705 -4.0941 26 6 -2.1341 5.0966 -4.7719 27 7 -1.1084 3.9157 -2.8895 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.9954 0.8310 -0.6657 34 1 3.8499 1.0376 1.0961 35 1 3.4411 3.5483 -0.1308 36 1 5.6145 4.8760 -1.0157 37 1 5.4681 5.0908 0.7452 38 1 10.4774 8.2891 -0.1297 39 1 2.2721 2.1231 -1.9977 40 1 -2.7824 4.3875 -5.2868 41 1 -2.7157 5.6531 -4.0369 42 1 -1.7055 5.7893 -5.4962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688723573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:46 Heat of formation + Delta-G solvation = 58.016135 kcal Electronic energy + Delta-G solvation = -26709.400314 eV Core-core repulsion = 22661.481435 eV Total energy + Delta-G solvation = -4047.918879 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.87300 -40.54607 -39.21132 -36.86272 -35.74118 -33.95216 -33.65749 -32.82308 -32.43281 -30.27202 -29.38080 -28.02260 -25.74076 -25.57891 -23.69514 -23.41042 -22.01520 -21.06658 -20.40455 -18.99159 -18.10162 -17.92649 -17.28947 -17.01421 -16.44195 -15.99384 -15.78193 -15.29431 -14.96446 -14.84873 -14.53370 -14.23845 -13.88459 -13.84484 -13.76038 -13.53017 -13.50082 -13.07905 -12.78941 -12.62171 -12.50279 -11.94292 -11.87599 -11.63170 -11.57131 -11.48804 -11.25764 -11.20606 -11.00226 -10.84574 -10.70885 -10.60436 -9.85943 -9.63584 -9.49729 -9.07653 -8.98716 -8.50021 -6.91264 -6.28244 -3.99995 0.51716 0.99837 1.25283 2.33949 2.64922 2.74880 2.94302 3.27215 3.34125 3.50715 3.51233 3.61554 3.66272 4.24371 4.25462 4.33701 4.38022 4.57979 4.60669 4.72657 4.74724 4.77580 5.04963 5.10809 5.12551 5.15420 5.26297 5.41880 5.46777 5.47644 5.65847 5.69118 5.76217 5.76823 5.98075 6.02052 6.12477 6.42916 6.87473 7.52426 7.53263 7.73383 7.94833 8.42501 8.44148 9.17880 10.81063 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.011800 B = 0.002482 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.285586 B =11280.264487 C =13212.173097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.136 3.864 4 H 0.103 0.897 5 C 0.113 3.887 6 N -0.738 5.738 7 C 0.533 3.467 8 O -0.517 6.517 9 C -0.125 4.125 10 S -0.140 6.140 11 C -0.521 4.521 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.881 5.881 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.702 5.702 20 C 0.621 3.379 21 O -0.499 6.499 22 C 0.125 3.875 23 N -0.250 5.250 24 N -0.051 5.051 25 N -0.133 5.133 26 C 0.091 3.909 27 N -0.246 5.246 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.400 0.600 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.414 0.586 40 H 0.106 0.894 41 H 0.115 0.885 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.859 -11.243 -7.267 30.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C 0.032 3.968 4 H 0.121 0.879 5 C -0.011 4.011 6 N -0.394 5.394 7 C 0.319 3.681 8 O -0.392 6.392 9 C -0.276 4.276 10 S 0.086 5.914 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.159 1.159 19 N -0.356 5.356 20 C 0.400 3.600 21 O -0.370 6.370 22 C -0.159 4.159 23 N -0.125 5.125 24 N -0.044 5.044 25 N -0.046 5.046 26 C -0.049 4.049 27 N -0.101 5.101 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.234 0.766 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.251 0.749 40 H 0.125 0.875 41 H 0.134 0.866 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -25.970 -12.428 -6.878 29.601 hybrid contribution -0.364 1.218 -0.333 1.314 sum -26.334 -11.211 -7.211 29.515 Atomic orbital electron populations 1.21809 0.94555 1.01029 1.02943 1.21918 0.97211 0.94709 1.03358 1.21503 0.94108 0.94594 0.86610 0.87915 1.21621 0.90974 0.84745 1.03805 1.45954 1.07823 1.08951 1.76632 1.20273 0.81442 0.91028 0.75389 1.90708 1.55448 1.46070 1.46933 1.23282 1.03028 0.95465 1.05785 1.84767 0.98049 1.13050 1.95550 1.22316 0.97235 0.89993 1.57326 0.89414 1.24717 0.98285 0.95050 0.93294 1.69937 1.21417 1.12615 1.47771 0.86729 0.82380 0.82481 0.80218 1.19197 1.19962 1.15899 1.45797 1.15540 1.56486 1.17818 1.15997 0.82618 0.78160 0.83189 1.90882 1.50919 1.57690 1.37468 1.25270 0.88948 1.04079 0.97605 1.76172 1.24259 1.13537 0.98556 1.78990 0.92226 1.11719 1.21502 1.50294 1.13001 1.34413 1.06935 1.22607 0.86284 0.97261 0.98714 1.75078 1.22544 1.12912 0.99527 0.91836 0.92873 0.93118 0.91085 0.90051 0.90516 0.89459 0.76553 0.88447 0.88471 0.91942 0.74902 0.87519 0.86618 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.51 37.16 0.32 -0.90 16 2 C -0.13 -0.93 5.61 -26.73 -0.15 -1.08 16 3 C 0.14 1.08 2.41 -67.93 -0.16 0.91 16 4 H 0.10 0.89 7.58 -51.93 -0.39 0.49 16 5 C 0.11 1.08 5.23 -4.04 -0.02 1.05 16 6 N -0.74 -8.78 5.39 -60.30 -0.32 -9.11 16 7 C 0.53 9.10 7.85 -10.98 -0.09 9.01 16 8 O -0.52 -10.72 15.86 5.56 0.09 -10.63 16 9 C -0.12 -2.40 6.16 36.00 0.22 -2.18 16 10 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 11 C -0.52 -15.05 10.04 30.94 0.31 -14.74 16 12 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 13 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 14 N -0.88 -26.69 13.97 55.49 0.78 -25.92 16 15 Si 0.86 21.82 27.74 -169.99 -4.71 17.10 16 16 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 19 N -0.70 -5.94 4.47 -54.70 -0.24 -6.19 16 20 C 0.62 6.55 6.40 -12.25 -0.08 6.48 16 21 O -0.50 -6.30 14.23 5.34 0.08 -6.22 16 22 C 0.12 1.37 8.14 -156.25 -1.27 0.10 16 23 N -0.25 -2.78 12.26 32.10 0.39 -2.39 16 24 N -0.05 -0.50 13.23 60.35 0.80 0.29 16 25 N -0.13 -1.05 4.39 -16.64 -0.07 -1.12 16 26 C 0.09 0.15 11.62 59.85 0.70 0.85 16 27 N -0.25 -2.56 12.17 32.11 0.39 -2.16 16 28 H 0.06 0.58 7.84 -51.93 -0.41 0.18 16 29 H 0.05 0.52 5.65 -51.93 -0.29 0.23 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.40 4.08 8.14 -40.82 -0.33 3.75 16 36 H 0.10 1.75 8.14 -51.91 -0.42 1.33 16 37 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 38 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.41 3.32 8.35 -40.82 -0.34 2.98 16 40 H 0.11 -0.03 8.14 -51.93 -0.42 -0.45 16 41 H 0.12 0.03 8.14 -51.93 -0.42 -0.39 16 42 H 0.12 -0.02 8.14 -51.93 -0.42 -0.45 16 LS Contribution 376.00 15.07 5.67 5.67 Total: -1.00 -37.87 376.00 -5.06 -42.93 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.57 Total: 1.08 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -0.32 Total: 2.21 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 1.72 Total: -46.60 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.16 Total: -16.86 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.87 -5.06 -42.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688723573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.946 kcal (2) G-P(sol) polarization free energy of solvation -37.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds