Wall clock time and date at job start Wed Apr 1 2020 01:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47434 * 2 1 4 4 H 1.08999 * 109.46888 * 55.00148 * 3 2 1 5 5 C 1.53003 * 109.47014 * 174.99394 * 3 2 1 6 6 N 1.46499 * 109.46708 * 174.99880 * 5 3 2 7 7 C 1.34784 * 119.99893 * 180.02562 * 6 5 3 8 8 O 1.21283 * 119.99649 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.99774 * 179.72962 * 7 6 5 10 10 S 1.81008 * 109.46759 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99946 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99996 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00252 * 179.97438 * 11 10 9 14 14 N 1.31626 * 120.00327 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 119.99735 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47351 * 90.00094 * 15 13 11 17 17 H 1.48496 * 109.47299 * 210.00069 * 15 13 11 18 18 H 1.48507 * 109.47281 * 330.00181 * 15 13 11 19 19 N 1.46491 * 109.46969 * 294.99999 * 3 2 1 20 20 C 1.34776 * 120.00153 * 84.99920 * 19 3 2 21 21 O 1.21526 * 120.00370 * 0.02562 * 20 19 3 22 22 C 1.48012 * 119.99695 * 179.97438 * 20 19 3 23 23 N 1.34181 * 126.70162 * 0.02686 * 22 20 19 24 24 N 1.28976 * 107.25325 * 179.97438 * 23 22 20 25 25 N 1.28717 * 108.98788 * 0.02562 * 24 23 22 26 26 C 1.46508 * 125.31846 * 180.02562 * 25 24 23 27 27 N 1.28867 * 109.36071 * 359.72381 * 25 24 23 28 28 H 1.08997 * 109.47100 * 300.00763 * 1 2 3 29 29 H 1.09002 * 109.46547 * 59.99936 * 1 2 3 30 30 H 1.08996 * 109.47151 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47597 * 239.99813 * 2 1 3 32 32 H 1.09005 * 109.47041 * 119.99967 * 2 1 3 33 33 H 1.08998 * 109.46692 * 55.00382 * 5 3 2 34 34 H 1.08994 * 109.47584 * 295.00246 * 5 3 2 35 35 H 0.97005 * 120.00261 * 0.02562 * 6 5 3 36 36 H 1.09001 * 109.46809 * 299.99238 * 9 7 6 37 37 H 1.08993 * 109.47525 * 59.99679 * 9 7 6 38 38 H 0.97000 * 120.00223 * 180.02562 * 14 13 11 39 39 H 0.97006 * 119.99804 * 264.99213 * 19 3 2 40 40 H 1.08999 * 109.47118 * 89.97467 * 26 25 24 41 41 H 1.08998 * 109.46677 * 209.97321 * 26 25 24 42 42 H 1.09001 * 109.46924 * 329.97283 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1259 6 7 4.0631 2.8166 0.0061 7 6 5.3859 3.0628 0.0860 8 8 6.1636 2.1479 0.2567 9 6 5.8989 4.4738 -0.0433 10 16 7.7028 4.4759 0.1056 11 6 8.0230 6.1988 -0.0784 12 1 7.2046 6.8869 -0.2306 13 6 9.3270 6.6717 -0.0278 14 7 9.5661 7.9587 -0.1647 15 14 10.7425 5.4814 0.2347 16 1 11.2326 4.9972 -1.0808 17 1 11.8449 6.1733 0.9495 18 1 10.2752 4.3273 1.0442 19 7 1.6525 2.0974 -1.2517 20 6 0.4353 2.6644 -1.3669 21 8 -0.3408 2.6327 -0.4322 22 6 0.0440 3.3266 -2.6315 23 7 0.7897 3.4402 -3.7413 24 7 0.0857 4.0817 -4.6111 25 7 -1.0571 4.3705 -4.0941 26 6 -2.1341 5.0966 -4.7719 27 7 -1.1084 3.9157 -2.8895 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.9954 0.8310 -0.6657 34 1 3.8499 1.0376 1.0961 35 1 3.4411 3.5483 -0.1308 36 1 5.6145 4.8760 -1.0157 37 1 5.4681 5.0908 0.7452 38 1 10.4774 8.2891 -0.1297 39 1 2.2721 2.1231 -1.9977 40 1 -2.7824 4.3875 -5.2868 41 1 -2.7157 5.6531 -4.0369 42 1 -1.7055 5.7893 -5.4962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688723573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:45 Heat of formation + Delta-G solvation = 27.232281 kcal Electronic energy + Delta-G solvation = -26710.735202 eV Core-core repulsion = 22661.481435 eV Total energy + Delta-G solvation = -4049.253767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.57611 -41.38822 -40.46932 -37.74753 -36.34987 -35.05107 -34.66680 -34.39343 -33.49337 -31.53496 -29.91640 -28.98454 -27.84383 -26.47049 -24.45841 -24.07237 -22.75497 -21.87857 -21.56982 -20.01329 -19.55758 -18.75849 -18.11314 -17.76909 -17.72520 -17.21270 -16.98168 -16.61479 -16.54536 -15.76296 -15.59242 -15.24306 -14.96522 -14.77505 -14.64811 -14.53567 -14.16813 -14.11228 -14.08101 -13.53943 -13.33723 -13.19462 -13.08108 -12.98202 -12.70050 -12.55262 -12.37874 -12.27089 -12.17493 -11.86622 -11.84938 -11.51142 -11.48446 -11.16588 -11.03439 -10.53660 -10.30010 -10.16780 -8.98514 -8.51213 -6.21835 -0.19472 0.22758 0.77493 0.99425 1.32553 1.47394 1.55500 1.56687 1.67101 1.85394 2.20476 2.26430 2.71007 2.77358 2.87112 3.04052 3.49722 3.82078 3.96071 3.99796 4.05605 4.09659 4.21392 4.22514 4.40268 4.47574 4.48502 4.51618 4.59764 4.66521 4.79221 4.93371 4.94227 5.01011 5.13967 5.31006 5.36676 5.47339 5.70840 6.11647 6.12900 6.38598 6.77558 6.93820 6.99951 7.15415 8.61398 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.011800 B = 0.002482 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.285586 B =11280.264487 C =13212.173097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C 0.145 3.855 4 H 0.100 0.900 5 C 0.115 3.885 6 N -0.715 5.715 7 C 0.540 3.460 8 O -0.555 6.555 9 C -0.115 4.115 10 S -0.169 6.169 11 C -0.530 4.530 12 H 0.060 0.940 13 C 0.044 3.956 14 N -0.919 5.919 15 Si 0.916 3.084 16 H -0.262 1.262 17 H -0.260 1.260 18 H -0.235 1.235 19 N -0.692 5.692 20 C 0.624 3.376 21 O -0.524 6.524 22 C 0.112 3.888 23 N -0.268 5.268 24 N -0.064 5.064 25 N -0.116 5.116 26 C 0.072 3.928 27 N -0.262 5.262 28 H 0.051 0.949 29 H 0.035 0.965 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.411 0.589 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.277 0.723 39 H 0.418 0.582 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.923 -12.537 -7.601 31.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C 0.041 3.959 4 H 0.118 0.882 5 C -0.009 4.009 6 N -0.369 5.369 7 C 0.325 3.675 8 O -0.433 6.433 9 C -0.266 4.266 10 S 0.058 5.942 11 C -0.678 4.678 12 H 0.078 0.922 13 C -0.161 4.161 14 N -0.557 5.557 15 Si 0.738 3.262 16 H -0.186 1.186 17 H -0.184 1.184 18 H -0.158 1.158 19 N -0.346 5.346 20 C 0.404 3.596 21 O -0.396 6.396 22 C -0.172 4.172 23 N -0.142 5.142 24 N -0.057 5.057 25 N -0.031 5.031 26 C -0.065 4.065 27 N -0.118 5.118 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.247 0.753 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.086 0.914 39 H 0.255 0.745 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -27.072 -13.713 -7.238 31.198 hybrid contribution -0.304 1.677 -0.315 1.733 sum -27.376 -12.036 -7.553 30.844 Atomic orbital electron populations 1.21749 0.95427 1.01240 1.01540 1.21906 0.96224 0.93938 1.04640 1.21461 0.92835 0.95365 0.86212 0.88194 1.21783 0.91694 0.82966 1.04408 1.45731 1.06100 1.10669 1.74392 1.19811 0.82757 0.89403 0.75500 1.90701 1.56745 1.46595 1.49289 1.23289 0.98382 0.97813 1.07125 1.84634 1.03886 1.10017 1.95708 1.22474 0.96718 0.91750 1.56818 0.92213 1.25599 1.00847 0.96632 0.93065 1.70020 1.22445 1.14312 1.48903 0.85842 0.79526 0.80418 0.80438 1.18622 1.18419 1.15835 1.45764 1.14967 1.55791 1.18076 1.16003 0.82792 0.77963 0.82860 1.90867 1.51694 1.58847 1.38239 1.25338 0.89331 1.04725 0.97807 1.76121 1.24985 1.14337 0.98765 1.78910 0.93062 1.12200 1.21564 1.50816 1.13194 1.32924 1.06169 1.23256 0.85580 0.98108 0.99510 1.75044 1.22580 1.13447 1.00719 0.92946 0.94560 0.92070 0.90208 0.88376 0.89940 0.88855 0.75267 0.87115 0.87149 0.91371 0.74452 0.85064 0.85018 0.84228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.51 71.98 0.61 -1.57 16 2 C -0.13 -1.51 5.61 30.59 0.17 -1.34 16 3 C 0.15 2.02 2.41 44.99 0.11 2.13 16 4 H 0.10 1.54 7.58 -2.39 -0.02 1.52 16 5 C 0.12 1.92 5.23 86.38 0.45 2.37 16 6 N -0.72 -15.49 5.39 -463.06 -2.49 -17.99 16 7 C 0.54 17.55 7.85 87.65 0.69 18.24 16 8 O -0.56 -22.28 15.86 -3.04 -0.05 -22.33 16 9 C -0.12 -4.29 6.16 71.24 0.44 -3.85 16 10 S -0.17 -8.46 18.55 -56.49 -1.05 -9.51 16 11 C -0.53 -30.97 10.04 67.95 0.68 -30.28 16 12 H 0.06 3.70 8.03 -2.91 -0.02 3.68 16 13 C 0.04 2.58 5.50 84.86 0.47 3.05 16 14 N -0.92 -56.30 13.97 21.65 0.30 -56.00 16 15 Si 0.92 44.97 27.74 68.60 1.90 46.87 16 16 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 17 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 18 H -0.23 -11.42 6.74 99.48 0.67 -10.75 16 19 N -0.69 -10.82 4.47 -445.27 -1.99 -12.81 16 20 C 0.62 12.80 6.40 86.84 0.56 13.35 16 21 O -0.52 -13.04 14.23 -3.80 -0.05 -13.09 16 22 C 0.11 2.40 8.14 137.15 1.12 3.52 16 23 N -0.27 -5.82 12.26 -52.36 -0.64 -6.46 16 24 N -0.06 -1.22 13.23 37.02 0.49 -0.73 16 25 N -0.12 -1.67 4.39 -206.57 -0.91 -2.58 16 26 C 0.07 0.09 11.62 127.77 1.49 1.58 16 27 N -0.26 -5.26 12.17 -52.31 -0.64 -5.90 16 28 H 0.05 0.92 7.84 -2.39 -0.02 0.90 16 29 H 0.04 0.68 5.65 -2.39 -0.01 0.67 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.41 7.46 8.14 -92.70 -0.75 6.71 16 36 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 37 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 38 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 39 H 0.42 6.10 8.35 -92.70 -0.77 5.32 16 40 H 0.13 -0.41 8.14 -2.39 -0.02 -0.43 16 41 H 0.13 -0.21 8.14 -2.39 -0.02 -0.23 16 42 H 0.14 -0.38 8.14 -2.39 -0.02 -0.40 16 Total: -1.00 -82.69 376.00 1.17 -81.52 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -0.48 Total: 11.81 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 6.78 Total: 7.19 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -5.88 Total: -102.47 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -0.10 Total: -35.42 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.90 Total: 46.87 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.05 Total: -9.51 kcal Total: -82.69 1.17 -81.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688723573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.753 kcal (2) G-P(sol) polarization free energy of solvation -82.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds