Wall clock time and date at job start Wed Apr 1 2020 00:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46923 * 2 1 4 4 N 1.34237 * 126.27845 * 260.45836 * 3 2 1 5 5 H 0.97002 * 125.73557 * 359.73239 * 4 3 2 6 6 N 1.39932 * 108.52051 * 180.02562 * 4 3 2 7 7 C 1.30529 * 108.89301 * 0.02562 * 6 4 3 8 8 Cl 1.73602 * 126.00217 * 180.02562 * 7 6 4 9 9 C 1.38070 * 126.28165 * 80.46127 * 3 2 1 10 10 C 1.47379 * 126.42133 * 359.97438 * 9 3 2 11 11 O 1.21613 * 119.99730 * 274.82787 * 10 9 3 12 12 N 1.34777 * 120.00492 * 94.83087 * 10 9 3 13 13 C 1.47152 * 120.97535 * 354.47387 * 12 10 9 14 14 C 1.53721 * 108.16170 * 129.43291 * 13 12 10 15 15 O 1.42958 * 109.14578 * 52.53415 * 14 13 12 16 16 C 1.42961 * 114.16946 * 297.28837 * 15 14 13 17 17 H 1.09003 * 109.55641 * 302.63624 * 16 15 14 18 18 C 1.53000 * 109.51521 * 182.50554 * 16 15 14 19 19 N 1.46499 * 109.46827 * 65.25448 * 18 16 15 20 20 C 1.36940 * 119.99605 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00005 * 0.02562 * 20 19 18 22 22 C 1.38818 * 119.99741 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99539 * 180.02562 * 22 20 19 24 24 Si 1.86792 * 120.00051 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.46988 * 89.99647 * 24 22 20 26 26 H 1.48494 * 109.47410 * 209.99397 * 24 22 20 27 27 H 1.48498 * 109.47309 * 329.99910 * 24 22 20 28 28 C 1.47151 * 120.98553 * 174.75524 * 12 10 9 29 29 H 1.08997 * 109.46972 * 64.97166 * 1 2 3 30 30 H 1.08999 * 109.46618 * 184.96982 * 1 2 3 31 31 H 1.08996 * 109.47584 * 304.96787 * 1 2 3 32 32 H 1.08998 * 109.47481 * 239.99457 * 2 1 3 33 33 H 1.09002 * 109.47176 * 119.99985 * 2 1 3 34 34 H 1.08997 * 109.68388 * 249.20973 * 13 12 10 35 35 H 1.08994 * 109.68694 * 9.76549 * 13 12 10 36 36 H 1.08999 * 109.65331 * 292.56673 * 14 13 12 37 37 H 1.09000 * 109.44235 * 172.37388 * 14 13 12 38 38 H 1.09006 * 109.47342 * 185.25824 * 18 16 15 39 39 H 1.08998 * 109.46935 * 305.25515 * 18 16 15 40 40 H 0.96992 * 120.00473 * 0.02562 * 19 18 16 41 41 H 0.97002 * 119.99817 * 180.02562 * 23 22 20 42 42 H 1.08996 * 109.68216 * 350.23390 * 28 12 10 43 43 H 1.08993 * 109.67993 * 110.79012 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.4662 2.1100 -1.0672 5 1 2.5139 1.7754 -1.9764 6 7 2.8442 3.3898 -0.6462 7 6 2.6497 3.4860 0.6409 8 17 2.9697 4.8836 1.6197 9 6 2.1307 2.2527 1.0976 10 6 1.7643 1.9174 2.4852 11 8 0.6134 2.0432 2.8575 12 7 2.7047 1.4715 3.3416 13 6 4.0761 1.1966 2.8845 14 6 5.0500 1.9176 3.8305 15 8 4.7467 1.5564 5.1800 16 6 3.4434 1.9532 5.6133 17 1 3.3340 3.0319 5.5003 18 6 3.2552 1.5717 7.0830 19 7 4.1846 2.3443 7.9109 20 6 4.1979 2.1710 9.2692 21 1 3.5235 1.4644 9.7300 22 6 5.0789 2.9027 10.0537 23 7 5.0920 2.7357 11.3591 24 14 6.2457 4.1243 9.2565 25 1 5.5938 5.4565 9.1839 26 1 7.4867 4.2241 10.0659 27 1 6.5843 3.6635 7.8860 28 6 2.3887 1.2394 4.7600 29 1 -0.3633 0.4348 -0.9312 30 1 -0.3632 -1.0238 0.0890 31 1 -0.3634 0.5889 0.8421 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 4.2631 0.1231 2.9092 35 1 4.2061 1.5691 1.8685 36 1 4.9471 2.9960 3.7102 37 1 6.0718 1.6201 3.5948 38 1 2.2311 1.7891 7.3866 39 1 3.4537 0.5075 7.2103 40 1 4.7900 2.9792 7.4971 41 1 5.7073 3.2473 11.9074 42 1 1.4007 1.6403 4.9863 43 1 2.4086 0.1702 4.9702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700154121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:53 Heat of formation + Delta-G solvation = 9.896181 kcal Electronic energy + Delta-G solvation = -28232.825099 eV Core-core repulsion = 24148.483125 eV Total energy + Delta-G solvation = -4084.341974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 42.60 seconds Orbital eigenvalues (eV) -42.12528 -40.11495 -38.26434 -37.21725 -35.15907 -34.69137 -34.49907 -32.38672 -31.82314 -30.61520 -29.98165 -28.17884 -26.04850 -24.59730 -23.53021 -22.86761 -22.38562 -21.49183 -20.85096 -19.26762 -18.25958 -17.62913 -17.03329 -16.62650 -16.09706 -15.79763 -15.64296 -15.39659 -15.16799 -14.78797 -14.51340 -14.34129 -14.19604 -13.93260 -13.34866 -13.13468 -13.05731 -12.79367 -12.53768 -12.48889 -12.30342 -12.24251 -11.86205 -11.81462 -11.72775 -11.20030 -11.16914 -11.04214 -10.82621 -10.55014 -10.19364 -10.04737 -9.96965 -9.94106 -9.54094 -9.22066 -8.86291 -8.62945 -7.18026 -5.71626 -3.06606 1.00887 1.03773 1.68383 2.27739 2.36760 2.82218 3.43650 3.48794 3.50542 3.83677 3.86389 4.17976 4.25815 4.57956 4.61783 4.64402 4.65802 4.83328 4.87216 4.93730 5.01985 5.06422 5.21988 5.28170 5.33422 5.41508 5.47006 5.57184 5.58437 5.63006 5.76528 5.78441 5.80172 5.96746 6.23546 6.43102 6.48973 6.62093 6.76064 7.13524 7.34032 7.93298 8.03789 8.47164 9.26548 9.98972 10.19112 11.46743 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.017749 B = 0.003007 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.218806 B = 9310.817844 C =10074.543715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.067 4.067 3 C 0.146 3.854 4 N -0.446 5.446 5 H 0.449 0.551 6 N -0.273 5.273 7 C 0.157 3.843 8 Cl 0.026 6.974 9 C -0.264 4.264 10 C 0.600 3.400 11 O -0.524 6.524 12 N -0.603 5.603 13 C 0.077 3.923 14 C 0.045 3.955 15 O -0.360 6.360 16 C 0.069 3.931 17 H 0.064 0.936 18 C 0.168 3.832 19 N -0.750 5.750 20 C -0.242 4.242 21 H 0.091 0.909 22 C 0.004 3.996 23 N -0.935 5.935 24 Si 0.882 3.118 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.274 1.274 28 C 0.088 3.912 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.104 0.896 38 H 0.046 0.954 39 H 0.038 0.962 40 H 0.364 0.636 41 H 0.259 0.741 42 H 0.104 0.896 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.488 -5.517 -31.149 32.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.106 4.106 3 C 0.014 3.986 4 N -0.154 5.154 5 H 0.295 0.705 6 N -0.098 5.098 7 C -0.035 4.035 8 Cl 0.054 6.946 9 C -0.279 4.279 10 C 0.386 3.614 11 O -0.399 6.399 12 N -0.337 5.337 13 C -0.047 4.047 14 C -0.033 4.033 15 O -0.278 6.278 16 C 0.010 3.990 17 H 0.082 0.918 18 C 0.040 3.960 19 N -0.396 5.396 20 C -0.372 4.372 21 H 0.109 0.891 22 C -0.191 4.191 23 N -0.583 5.583 24 Si 0.713 3.287 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.200 1.200 28 C -0.035 4.035 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.197 0.803 41 H 0.069 0.931 42 H 0.123 0.877 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.612 -4.874 -31.521 32.385 hybrid contribution 0.724 0.737 -0.489 1.143 sum -4.888 -4.137 -32.010 32.644 Atomic orbital electron populations 1.21800 0.92603 1.03249 1.03366 1.20411 0.97772 0.87691 1.04751 1.21473 0.95491 0.95444 0.86198 1.45869 1.50353 1.09169 1.10059 0.70497 1.77200 1.23681 0.97943 1.11000 1.22616 0.99745 0.90289 0.90894 1.98453 1.93811 1.36961 1.65389 1.19691 1.18518 0.94541 0.95170 1.17129 0.84570 0.76420 0.83297 1.90803 1.18819 1.52661 1.77622 1.48071 1.10677 1.65391 1.09574 1.22516 0.81592 1.01370 0.99175 1.22999 0.98626 0.98717 0.82964 1.88142 1.32815 1.80201 1.26646 1.22879 0.82291 0.98237 0.95615 0.91807 1.20599 0.94344 0.96166 0.84851 1.42575 1.43996 1.48687 1.04364 1.19052 1.17431 1.19910 0.80812 0.89139 1.24648 0.99393 0.99875 0.95199 1.69704 1.40659 1.44699 1.03255 0.86555 0.81323 0.81963 0.78889 1.21171 1.21767 1.19952 1.22363 1.00783 1.01779 0.78572 0.92416 0.91087 0.90746 0.89585 0.88473 0.90186 0.89517 0.92710 0.87847 0.93685 0.94401 0.80312 0.93104 0.87733 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 37.16 0.37 -0.51 16 2 C -0.07 -0.33 6.25 -27.88 -0.17 -0.50 16 3 C 0.15 1.10 6.55 -81.60 -0.53 0.57 16 4 N -0.45 -2.94 7.28 33.86 0.25 -2.70 16 5 H 0.45 1.24 8.96 -182.72 -1.64 -0.40 16 6 N -0.27 -2.77 12.64 33.17 0.42 -2.35 16 7 C 0.16 1.78 7.78 -16.91 -0.13 1.65 16 8 Cl 0.03 0.30 29.19 -51.86 -1.51 -1.21 16 9 C -0.26 -2.84 3.92 -105.04 -0.41 -3.26 16 10 C 0.60 7.72 7.20 -12.54 -0.09 7.63 16 11 O -0.52 -8.38 16.39 5.27 0.09 -8.29 16 12 N -0.60 -7.23 3.01 -173.30 -0.52 -7.75 16 13 C 0.08 0.75 6.59 -3.31 -0.02 0.73 16 14 C 0.05 0.53 7.00 37.53 0.26 0.79 16 15 O -0.36 -5.81 10.33 -35.23 -0.36 -6.17 16 16 C 0.07 1.09 2.81 -26.57 -0.07 1.02 16 17 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 18 C 0.17 3.27 5.93 -4.04 -0.02 3.25 16 19 N -0.75 -18.41 5.36 -59.91 -0.32 -18.73 16 20 C -0.24 -7.00 10.47 -15.06 -0.16 -7.16 16 21 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 22 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 23 N -0.94 -29.86 13.97 55.49 0.78 -29.09 16 24 Si 0.88 22.70 27.74 -169.99 -4.71 17.98 16 25 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 27 H -0.27 -6.72 6.52 56.52 0.37 -6.35 16 28 C 0.09 1.16 5.91 -3.53 -0.02 1.14 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.66 7.93 -51.93 -0.41 0.24 16 32 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.75 6.32 -51.93 -0.33 0.42 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.36 8.89 5.53 -40.82 -0.23 8.66 16 41 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 42 H 0.10 1.45 7.12 -51.93 -0.37 1.08 16 43 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 374.24 15.07 5.64 5.64 Total: -1.00 -36.52 374.24 -8.59 -45.11 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.21 Total: 2.18 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -1.11 Total: 5.39 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.60 Total: -60.62 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.28 Total: -14.47 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.71 Total: 17.98 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -1.51 Total: -1.21 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.52 -8.59 -45.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700154121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.009 kcal (2) G-P(sol) polarization free energy of solvation -36.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 42.60 seconds