Wall clock time and date at job start Wed Apr 1 2020 00:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46923 * 2 1 4 4 N 1.34237 * 126.27845 * 260.45836 * 3 2 1 5 5 H 0.97002 * 125.73557 * 359.73239 * 4 3 2 6 6 N 1.39932 * 108.52051 * 180.02562 * 4 3 2 7 7 C 1.30529 * 108.89301 * 0.02562 * 6 4 3 8 8 Cl 1.73602 * 126.00217 * 180.02562 * 7 6 4 9 9 C 1.38070 * 126.28165 * 80.46127 * 3 2 1 10 10 C 1.47379 * 126.42133 * 359.97438 * 9 3 2 11 11 O 1.21613 * 119.99730 * 274.82787 * 10 9 3 12 12 N 1.34777 * 120.00492 * 94.83087 * 10 9 3 13 13 C 1.47152 * 120.97535 * 354.47387 * 12 10 9 14 14 C 1.53721 * 108.16170 * 129.43291 * 13 12 10 15 15 O 1.42958 * 109.14578 * 52.53415 * 14 13 12 16 16 C 1.42961 * 114.16946 * 297.28837 * 15 14 13 17 17 H 1.09003 * 109.55641 * 302.63624 * 16 15 14 18 18 C 1.53000 * 109.51521 * 182.50554 * 16 15 14 19 19 N 1.46499 * 109.46827 * 65.25448 * 18 16 15 20 20 C 1.36940 * 119.99605 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00005 * 0.02562 * 20 19 18 22 22 C 1.38818 * 119.99741 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99539 * 180.02562 * 22 20 19 24 24 Si 1.86792 * 120.00051 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.46988 * 89.99647 * 24 22 20 26 26 H 1.48494 * 109.47410 * 209.99397 * 24 22 20 27 27 H 1.48498 * 109.47309 * 329.99910 * 24 22 20 28 28 C 1.47151 * 120.98553 * 174.75524 * 12 10 9 29 29 H 1.08997 * 109.46972 * 64.97166 * 1 2 3 30 30 H 1.08999 * 109.46618 * 184.96982 * 1 2 3 31 31 H 1.08996 * 109.47584 * 304.96787 * 1 2 3 32 32 H 1.08998 * 109.47481 * 239.99457 * 2 1 3 33 33 H 1.09002 * 109.47176 * 119.99985 * 2 1 3 34 34 H 1.08997 * 109.68388 * 249.20973 * 13 12 10 35 35 H 1.08994 * 109.68694 * 9.76549 * 13 12 10 36 36 H 1.08999 * 109.65331 * 292.56673 * 14 13 12 37 37 H 1.09000 * 109.44235 * 172.37388 * 14 13 12 38 38 H 1.09006 * 109.47342 * 185.25824 * 18 16 15 39 39 H 1.08998 * 109.46935 * 305.25515 * 18 16 15 40 40 H 0.96992 * 120.00473 * 0.02562 * 19 18 16 41 41 H 0.97002 * 119.99817 * 180.02562 * 23 22 20 42 42 H 1.08996 * 109.68216 * 350.23390 * 28 12 10 43 43 H 1.08993 * 109.67993 * 110.79012 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.4662 2.1100 -1.0672 5 1 2.5139 1.7754 -1.9764 6 7 2.8442 3.3898 -0.6462 7 6 2.6497 3.4860 0.6409 8 17 2.9697 4.8836 1.6197 9 6 2.1307 2.2527 1.0976 10 6 1.7643 1.9174 2.4852 11 8 0.6134 2.0432 2.8575 12 7 2.7047 1.4715 3.3416 13 6 4.0761 1.1966 2.8845 14 6 5.0500 1.9176 3.8305 15 8 4.7467 1.5564 5.1800 16 6 3.4434 1.9532 5.6133 17 1 3.3340 3.0319 5.5003 18 6 3.2552 1.5717 7.0830 19 7 4.1846 2.3443 7.9109 20 6 4.1979 2.1710 9.2692 21 1 3.5235 1.4644 9.7300 22 6 5.0789 2.9027 10.0537 23 7 5.0920 2.7357 11.3591 24 14 6.2457 4.1243 9.2565 25 1 5.5938 5.4565 9.1839 26 1 7.4867 4.2241 10.0659 27 1 6.5843 3.6635 7.8860 28 6 2.3887 1.2394 4.7600 29 1 -0.3633 0.4348 -0.9312 30 1 -0.3632 -1.0238 0.0890 31 1 -0.3634 0.5889 0.8421 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 4.2631 0.1231 2.9092 35 1 4.2061 1.5691 1.8685 36 1 4.9471 2.9960 3.7102 37 1 6.0718 1.6201 3.5948 38 1 2.2311 1.7891 7.3866 39 1 3.4537 0.5075 7.2103 40 1 4.7900 2.9792 7.4971 41 1 5.7073 3.2473 11.9074 42 1 1.4007 1.6403 4.9863 43 1 2.4086 0.1702 4.9702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700154121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:46 Heat of formation + Delta-G solvation = -17.729367 kcal Electronic energy + Delta-G solvation = -28234.023033 eV Core-core repulsion = 24148.483125 eV Total energy + Delta-G solvation = -4085.539908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -42.83669 -41.13089 -39.38408 -38.03895 -36.80063 -35.74656 -35.19770 -34.02608 -32.79677 -32.13061 -30.70269 -29.33349 -27.45211 -25.26038 -24.76146 -24.07608 -23.13187 -22.90589 -21.97265 -20.10846 -19.74174 -18.97575 -17.97621 -17.69647 -17.14495 -16.61924 -16.51105 -16.40286 -16.35678 -16.10998 -15.73913 -15.36658 -15.25122 -14.81503 -14.64171 -14.48484 -14.25667 -13.98687 -13.77852 -13.71169 -13.21439 -13.16630 -12.95437 -12.86108 -12.61594 -12.40606 -12.33581 -12.24369 -12.04113 -11.89218 -11.83150 -11.66096 -11.25272 -11.06234 -10.99532 -10.64772 -9.95003 -9.65741 -9.30046 -8.02040 -5.35059 0.28871 0.37013 0.88432 1.34590 1.38561 1.40950 1.49297 1.67156 1.99060 2.49377 2.71174 3.26416 3.30122 3.41932 3.50853 3.70832 3.85542 3.89735 3.94192 4.05488 4.07820 4.23288 4.26358 4.34242 4.37574 4.46136 4.55850 4.66446 4.71729 4.75306 4.84971 4.94885 4.95471 5.02454 5.08393 5.25328 5.33697 5.75359 5.90587 6.16823 6.17765 6.20440 6.22992 6.97317 7.07815 7.83511 8.02832 9.19379 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.017749 B = 0.003007 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.218806 B = 9310.817844 C =10074.543715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.066 4.066 3 C 0.170 3.830 4 N -0.423 5.423 5 H 0.467 0.533 6 N -0.289 5.289 7 C 0.146 3.854 8 Cl 0.011 6.989 9 C -0.292 4.292 10 C 0.604 3.396 11 O -0.563 6.563 12 N -0.602 5.602 13 C 0.083 3.917 14 C 0.038 3.962 15 O -0.384 6.384 16 C 0.082 3.918 17 H 0.054 0.946 18 C 0.163 3.837 19 N -0.755 5.755 20 C -0.233 4.233 21 H 0.061 0.939 22 C -0.063 4.063 23 N -0.983 5.983 24 Si 0.952 3.048 25 H -0.279 1.279 26 H -0.293 1.293 27 H -0.254 1.254 28 C 0.096 3.904 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.037 0.963 32 H 0.127 0.873 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.049 0.951 37 H 0.128 0.872 38 H 0.050 0.950 39 H 0.038 0.962 40 H 0.366 0.634 41 H 0.258 0.742 42 H 0.095 0.905 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.627 -6.505 -34.880 35.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.105 4.105 3 C 0.036 3.964 4 N -0.134 5.134 5 H 0.318 0.682 6 N -0.114 5.114 7 C -0.046 4.046 8 Cl 0.039 6.961 9 C -0.307 4.307 10 C 0.392 3.608 11 O -0.441 6.441 12 N -0.334 5.334 13 C -0.040 4.040 14 C -0.039 4.039 15 O -0.303 6.303 16 C 0.023 3.977 17 H 0.072 0.928 18 C 0.037 3.963 19 N -0.400 5.400 20 C -0.364 4.364 21 H 0.079 0.921 22 C -0.254 4.254 23 N -0.634 5.634 24 Si 0.780 3.220 25 H -0.205 1.205 26 H -0.220 1.220 27 H -0.179 1.179 28 C -0.027 4.027 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.056 0.944 32 H 0.145 0.855 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.067 0.933 37 H 0.146 0.854 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.199 0.801 41 H 0.067 0.933 42 H 0.113 0.887 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.744 -5.876 -35.342 36.140 hybrid contribution 0.380 0.934 0.591 1.169 sum -4.364 -4.942 -34.751 35.371 Atomic orbital electron populations 1.21770 0.93245 1.03594 1.02247 1.20591 0.96985 0.86039 1.06836 1.21795 0.93327 0.96075 0.85208 1.45878 1.48754 1.07874 1.10864 0.68193 1.77142 1.24206 0.99658 1.10435 1.22618 1.00685 0.90070 0.91262 1.98440 1.93949 1.37833 1.65897 1.19591 1.20918 0.95343 0.94872 1.17381 0.83963 0.75413 0.84071 1.90781 1.20541 1.54280 1.78524 1.48111 1.11571 1.64950 1.08781 1.22624 0.79599 1.02450 0.99290 1.23272 1.00492 0.98807 0.81298 1.88088 1.32500 1.80468 1.29212 1.22542 0.83562 0.97839 0.93720 0.92792 1.20750 0.93409 0.95444 0.86711 1.42590 1.44938 1.49342 1.03150 1.19061 1.16068 1.18396 0.82861 0.92071 1.25465 1.01758 1.02462 0.95723 1.69876 1.42078 1.46418 1.04985 0.85436 0.78634 0.79335 0.78627 1.20545 1.21954 1.17883 1.22145 0.99215 1.02103 0.79246 0.91512 0.89574 0.94350 0.85504 0.88376 0.88076 0.87873 0.93289 0.85410 0.93187 0.94372 0.80102 0.93299 0.88678 0.88598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.89 71.98 0.71 -0.65 16 2 C -0.07 -0.40 6.25 29.85 0.19 -0.21 16 3 C 0.17 2.06 6.55 42.15 0.28 2.33 16 4 N -0.42 -4.20 7.28 -46.79 -0.34 -4.54 16 5 H 0.47 0.70 8.96 -213.43 -1.91 -1.21 16 6 N -0.29 -5.26 12.64 -48.95 -0.62 -5.88 16 7 C 0.15 3.10 7.78 85.66 0.67 3.77 16 8 Cl 0.01 0.25 29.19 -2.72 -0.08 0.17 16 9 C -0.29 -5.80 3.92 -20.14 -0.08 -5.88 16 10 C 0.60 15.00 7.20 86.65 0.62 15.62 16 11 O -0.56 -18.15 16.39 -4.07 -0.07 -18.22 16 12 N -0.60 -13.50 3.01 -820.46 -2.47 -15.97 16 13 C 0.08 1.39 6.59 86.50 0.57 1.96 16 14 C 0.04 0.81 7.00 72.22 0.51 1.32 16 15 O -0.38 -11.73 10.33 -148.98 -1.54 -13.27 16 16 C 0.08 2.56 2.81 30.70 0.09 2.65 16 17 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 18 C 0.16 6.33 5.93 86.38 0.51 6.84 16 19 N -0.75 -36.87 5.36 -343.44 -1.84 -38.71 16 20 C -0.23 -13.69 10.47 84.03 0.88 -12.81 16 21 H 0.06 3.88 8.06 -2.91 -0.02 3.85 16 22 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16 23 N -0.98 -64.25 13.97 21.65 0.30 -63.95 16 24 Si 0.95 47.10 27.74 68.60 1.90 49.00 16 25 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 26 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 27 H -0.25 -11.61 6.52 99.48 0.65 -10.96 16 28 C 0.10 2.46 5.91 86.36 0.51 2.97 16 29 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.04 0.65 7.93 -2.39 -0.02 0.63 16 32 H 0.13 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.10 1.45 6.32 -2.39 -0.02 1.44 16 36 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.37 17.47 5.53 -92.71 -0.51 16.96 16 41 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 42 H 0.09 2.64 7.12 -2.39 -0.02 2.63 16 43 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -81.34 374.24 -0.26 -81.60 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -1.42 Total: 15.19 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 5.92 Total: 14.58 kcal Atomic # 7 Polarization: -124.09 SS G_CDS: -4.97 Total: -129.06 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -1.61 Total: -31.49 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.90 Total: 49.00 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -0.08 Total: 0.17 kcal Total: -81.34 -0.26 -81.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700154121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.871 kcal (2) G-P(sol) polarization free energy of solvation -81.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds