Wall clock time and date at job start Wed Apr 1 2020 00:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50707 * 109.47075 * 2 1 4 4 N 1.34234 * 126.27903 * 265.03750 * 3 2 1 5 5 H 0.96994 * 125.74352 * 359.94044 * 4 3 2 6 6 N 1.39930 * 108.51823 * 179.71829 * 4 3 2 7 7 C 1.30532 * 108.90034 * 0.42800 * 6 4 3 8 8 Cl 1.73599 * 126.01149 * 179.85008 * 7 6 4 9 9 C 1.38068 * 126.27875 * 85.00060 * 3 2 1 10 10 C 1.47384 * 126.42515 * 0.03202 * 9 3 2 11 11 O 1.21608 * 120.00140 * 269.97966 * 10 9 3 12 12 N 1.34775 * 119.99933 * 89.97824 * 10 9 3 13 13 C 1.47158 * 120.98086 * 359.97438 * 12 10 9 14 14 C 1.53292 * 108.38542 * 230.51364 * 13 12 10 15 15 O 1.42964 * 109.22393 * 307.70028 * 14 13 12 16 16 C 1.42957 * 114.16857 * 62.58295 * 15 14 13 17 17 H 1.08995 * 109.51360 * 57.33911 * 16 15 14 18 18 C 1.53004 * 109.51537 * 177.44654 * 16 15 14 19 19 N 1.46497 * 109.46540 * 299.99642 * 18 16 15 20 20 C 1.36939 * 119.99707 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00146 * 0.02562 * 20 19 18 22 22 C 1.38808 * 120.00298 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00369 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 119.99941 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47090 * 89.99834 * 24 22 20 26 26 H 1.48498 * 109.47358 * 209.99930 * 24 22 20 27 27 H 1.48501 * 109.46898 * 330.00283 * 24 22 20 28 28 C 1.47150 * 120.98365 * 179.71933 * 12 10 9 29 29 H 1.08999 * 109.47488 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47135 * 300.00280 * 1 2 3 31 31 H 1.09006 * 109.46809 * 59.99716 * 1 2 3 32 32 H 1.09000 * 109.47447 * 240.00423 * 2 1 3 33 33 H 1.08999 * 109.47201 * 119.99730 * 2 1 3 34 34 H 1.08994 * 109.68231 * 350.24054 * 13 12 10 35 35 H 1.09005 * 109.67579 * 110.79310 * 13 12 10 36 36 H 1.08996 * 109.51555 * 67.62362 * 14 13 12 37 37 H 1.08999 * 109.51504 * 187.77898 * 14 13 12 38 38 H 1.08994 * 109.47122 * 59.99777 * 18 16 15 39 39 H 1.09004 * 109.46737 * 179.97438 * 18 16 15 40 40 H 0.96996 * 120.00454 * 359.97438 * 19 18 16 41 41 H 0.96996 * 120.00173 * 179.97438 * 23 22 20 42 42 H 1.08995 * 109.68208 * 249.20605 * 28 12 10 43 43 H 1.09006 * 109.68124 * 9.76680 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3853 2.1385 -1.0781 5 1 2.3615 1.8294 -1.9971 6 7 2.7886 3.4094 -0.6534 7 6 2.6958 3.4698 0.6472 8 17 3.0886 4.8416 1.6359 9 6 2.2132 2.2235 1.1088 10 6 1.9521 1.8510 2.5107 11 8 0.8552 2.0469 2.9978 12 7 2.9291 1.2932 3.2529 13 6 4.2641 1.0459 2.6852 14 6 4.6507 -0.4089 2.9750 15 8 4.4973 -0.6673 4.3727 16 6 3.1558 -0.5346 4.8486 17 1 2.5028 -1.2037 4.2883 18 6 3.1027 -0.8947 6.3347 19 7 3.5509 -2.2773 6.5183 20 6 3.5890 -2.8237 7.7734 21 1 3.2882 -2.2355 8.6278 22 6 4.0142 -4.1335 7.9476 23 7 4.0503 -4.6589 9.1538 24 14 4.5351 -5.1507 6.4699 25 1 5.9902 -4.9720 6.2341 26 1 4.2482 -6.5844 6.7298 27 1 3.7809 -4.7044 5.2710 28 6 2.6941 0.9186 4.6563 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.2416 1.2123 1.6083 35 1 4.9889 1.7172 3.1460 36 1 4.0032 -1.0776 2.4079 37 1 5.6886 -0.5742 2.6860 38 1 3.7545 -0.2240 6.8945 39 1 2.0797 -0.7928 6.6969 40 1 3.8207 -2.8057 5.7510 41 1 4.3470 -5.5743 9.2754 42 1 3.2633 1.5771 5.3123 43 1 1.6314 1.0006 4.8852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700154122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:39 Heat of formation + Delta-G solvation = -17.511212 kcal Electronic energy + Delta-G solvation = -28283.712727 eV Core-core repulsion = 24198.182278 eV Total energy + Delta-G solvation = -4085.530448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.84282 -41.13242 -39.37957 -38.01909 -36.78709 -35.74261 -35.22714 -34.00835 -32.78597 -32.12152 -30.73035 -29.35465 -27.44920 -25.24767 -24.71466 -24.15211 -23.12320 -22.87529 -21.97221 -20.09378 -19.74378 -18.96396 -18.00498 -17.68404 -17.10467 -16.70168 -16.54322 -16.44910 -16.16354 -16.05640 -15.80600 -15.39341 -15.25602 -14.78704 -14.68967 -14.44903 -14.25922 -14.03132 -13.77557 -13.70047 -13.18982 -13.16240 -12.96396 -12.83693 -12.61442 -12.43223 -12.30528 -12.26848 -12.02034 -11.90879 -11.80776 -11.63354 -11.23939 -11.07571 -10.96129 -10.64413 -9.95698 -9.66602 -9.28338 -8.00168 -5.33660 0.29229 0.36012 0.89935 1.33739 1.39658 1.44950 1.51741 1.64884 1.98392 2.51785 2.73337 3.25970 3.31738 3.40592 3.50661 3.69762 3.85153 3.89316 3.96718 4.05250 4.09398 4.19225 4.26838 4.33134 4.36140 4.43862 4.54724 4.67814 4.70389 4.76368 4.86098 4.93378 4.95869 4.99190 5.09559 5.24620 5.28643 5.76762 5.89676 6.16318 6.19094 6.20730 6.25139 6.96742 7.10044 7.85127 8.05868 9.21379 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.017339 B = 0.002914 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.477925 B = 9607.436662 C =10210.168541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.068 4.068 3 C 0.168 3.832 4 N -0.422 5.422 5 H 0.467 0.533 6 N -0.287 5.287 7 C 0.148 3.852 8 Cl 0.016 6.984 9 C -0.290 4.290 10 C 0.604 3.396 11 O -0.565 6.565 12 N -0.600 5.600 13 C 0.079 3.921 14 C 0.042 3.958 15 O -0.386 6.386 16 C 0.087 3.913 17 H 0.065 0.935 18 C 0.162 3.838 19 N -0.752 5.752 20 C -0.235 4.235 21 H 0.057 0.943 22 C -0.065 4.065 23 N -0.985 5.985 24 Si 0.960 3.040 25 H -0.278 1.278 26 H -0.295 1.295 27 H -0.252 1.252 28 C 0.093 3.907 29 H 0.084 0.916 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.128 0.872 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.128 0.872 38 H 0.033 0.967 39 H 0.049 0.951 40 H 0.368 0.632 41 H 0.258 0.742 42 H 0.086 0.914 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.987 14.376 -29.379 32.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 C 0.033 3.967 4 N -0.133 5.133 5 H 0.318 0.682 6 N -0.113 5.113 7 C -0.044 4.044 8 Cl 0.044 6.956 9 C -0.306 4.306 10 C 0.391 3.609 11 O -0.443 6.443 12 N -0.333 5.333 13 C -0.043 4.043 14 C -0.035 4.035 15 O -0.305 6.305 16 C 0.028 3.972 17 H 0.083 0.917 18 C 0.035 3.965 19 N -0.398 5.398 20 C -0.366 4.366 21 H 0.075 0.925 22 C -0.256 4.256 23 N -0.636 5.636 24 Si 0.787 3.213 25 H -0.205 1.205 26 H -0.221 1.221 27 H -0.176 1.176 28 C -0.030 4.030 29 H 0.103 0.897 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.146 0.854 33 H 0.109 0.891 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.146 0.854 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.202 0.798 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.080 15.249 -29.749 33.494 hybrid contribution -0.022 -0.811 0.224 0.842 sum -2.102 14.438 -29.525 32.934 Atomic orbital electron populations 1.21755 0.93098 1.03680 1.02202 1.20583 0.97165 0.86377 1.06592 1.21708 0.93903 0.95766 0.85276 1.45859 1.49828 1.07785 1.09850 0.68215 1.77137 1.23818 1.00143 1.10189 1.22602 1.00732 0.90102 0.90935 1.98426 1.92198 1.39820 1.65205 1.19581 1.21451 0.95450 0.94093 1.17395 0.83003 0.75953 0.84522 1.90782 1.24821 1.55189 1.73502 1.48111 1.12633 1.60559 1.11988 1.22551 0.82816 0.98073 1.00848 1.23226 1.04240 0.94147 0.81906 1.88097 1.27087 1.90481 1.24853 1.22583 0.84374 0.95066 0.95193 0.91666 1.20753 0.98084 0.85335 0.92318 1.42509 1.81040 1.11456 1.04764 1.19052 1.35862 0.95981 0.85734 0.92455 1.25526 1.02315 0.98460 0.99346 1.69889 1.55615 1.15405 1.22649 0.85337 0.78596 0.77467 0.79936 1.20459 1.22137 1.17621 1.22240 1.03593 0.95262 0.81911 0.89704 0.94361 0.91253 0.85431 0.89131 0.87485 0.89743 0.91723 0.85436 0.94914 0.93366 0.79815 0.93305 0.89589 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.89 71.98 0.71 -0.86 16 2 C -0.07 -0.55 6.27 29.85 0.19 -0.36 16 3 C 0.17 2.14 6.41 42.15 0.27 2.41 16 4 N -0.42 -4.27 7.28 -46.79 -0.34 -4.61 16 5 H 0.47 0.88 8.96 -213.44 -1.91 -1.03 16 6 N -0.29 -5.07 12.64 -48.95 -0.62 -5.68 16 7 C 0.15 3.03 7.89 85.66 0.68 3.70 16 8 Cl 0.02 0.32 29.19 -2.72 -0.08 0.24 16 9 C -0.29 -5.76 3.94 -20.13 -0.08 -5.84 16 10 C 0.60 15.08 7.16 86.65 0.62 15.70 16 11 O -0.56 -18.43 16.57 -4.06 -0.07 -18.49 16 12 N -0.60 -13.53 3.01 -820.51 -2.47 -16.00 16 13 C 0.08 1.35 6.54 86.35 0.56 1.91 16 14 C 0.04 0.77 6.98 72.08 0.50 1.27 16 15 O -0.39 -11.18 10.13 -148.98 -1.51 -12.69 16 16 C 0.09 2.55 2.88 30.83 0.09 2.64 16 17 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 18 C 0.16 6.15 5.96 86.38 0.51 6.67 16 19 N -0.75 -35.79 5.30 -343.45 -1.82 -37.60 16 20 C -0.24 -13.67 10.47 84.03 0.88 -12.79 16 21 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 22 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 23 N -0.98 -63.81 13.97 21.65 0.30 -63.51 16 24 Si 0.96 45.80 27.74 68.60 1.90 47.70 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 26 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 27 H -0.25 -10.76 6.52 99.48 0.65 -10.11 16 28 C 0.09 2.40 5.95 86.49 0.51 2.92 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.09 0.93 8.08 -2.39 -0.02 0.91 16 34 H 0.11 1.43 6.33 -2.39 -0.02 1.41 16 35 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.37 16.84 5.41 -92.71 -0.50 16.34 16 41 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 42 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.10 2.68 7.08 -2.38 -0.02 2.66 16 Total: -1.00 -80.19 374.19 -0.20 -80.38 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -1.41 Total: 16.33 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 5.92 Total: 13.93 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -4.95 Total: -127.41 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -1.58 Total: -31.18 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.90 Total: 47.70 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -0.08 Total: 0.24 kcal Total: -80.19 -0.20 -80.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700154122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.872 kcal (2) G-P(sol) polarization free energy of solvation -80.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds