Wall clock time and date at job start Wed Apr 1 2020 03:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47474 * 2 1 4 4 C 1.52996 * 109.47292 * 239.99515 * 2 1 3 5 5 C 1.53005 * 109.47571 * 174.99947 * 4 2 1 6 6 N 1.46496 * 109.47059 * 180.02562 * 5 4 2 7 7 C 1.34774 * 119.99544 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00472 * 0.02562 * 7 6 5 9 9 C 1.50706 * 120.00020 * 180.02562 * 7 6 5 10 10 N 1.46496 * 109.47106 * 179.97438 * 9 7 6 11 11 C 1.34601 * 126.43539 * 124.99934 * 10 9 7 12 12 N 1.31074 * 106.67775 * 180.02562 * 11 10 9 13 13 N 1.28837 * 107.99248 * 359.97438 * 12 11 10 14 14 N 1.28742 * 109.39448 * 359.73742 * 13 12 11 15 15 N 1.46506 * 109.46921 * 119.99949 * 2 1 3 16 16 C 1.34778 * 120.00026 * 274.99692 * 15 2 1 17 17 O 1.21281 * 119.99825 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99836 * 180.02562 * 16 15 2 19 19 S 1.81005 * 109.46889 * 180.02562 * 18 16 15 20 20 C 1.76191 * 99.99947 * 180.02562 * 19 18 16 21 21 H 1.08009 * 120.00187 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00323 * 180.02562 * 20 19 18 23 23 N 1.31626 * 119.99704 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00442 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47053 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47416 * 119.99724 * 24 22 20 27 27 H 1.48501 * 109.47004 * 240.00230 * 24 22 20 28 28 H 1.09000 * 109.47145 * 60.00200 * 1 2 3 29 29 H 1.08997 * 109.47474 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47139 * 300.00090 * 1 2 3 31 31 H 1.09004 * 109.46785 * 55.00233 * 4 2 1 32 32 H 1.09001 * 109.47364 * 295.00734 * 4 2 1 33 33 H 1.08996 * 109.46524 * 60.00315 * 5 4 2 34 34 H 1.08992 * 109.46876 * 300.00648 * 5 4 2 35 35 H 0.96994 * 120.00700 * 0.02562 * 6 5 4 36 36 H 1.09001 * 109.46953 * 299.99667 * 9 7 6 37 37 H 1.09000 * 109.47318 * 59.99264 * 9 7 6 38 38 H 1.08000 * 126.66566 * 359.96461 * 11 10 9 39 39 H 0.97003 * 119.99989 * 95.00461 * 15 2 1 40 40 H 1.08993 * 109.47118 * 300.00187 * 18 16 15 41 41 H 1.09001 * 109.46975 * 60.00684 * 18 16 15 42 42 H 0.97005 * 120.00308 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6134 -1.3137 6 7 4.0531 -1.3036 -2.5101 7 6 5.3740 -1.3397 -2.7753 8 8 6.1585 -0.8013 -2.0233 9 6 5.8762 -2.0492 -4.0063 10 7 7.3363 -1.9459 -4.0680 11 6 8.2065 -2.9680 -4.1669 12 7 9.4059 -2.4398 -4.1915 13 7 9.2788 -1.1601 -4.1124 14 7 8.0293 -0.8580 -4.0435 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0183 2.3572 17 8 1.8582 1.1584 2.4117 18 6 2.6499 -0.7286 3.5875 19 16 2.7100 0.4343 4.9733 20 6 3.3145 -0.6304 6.2402 21 1 3.5253 -1.6666 6.0199 22 6 3.5200 -0.1378 7.5214 23 7 3.2636 1.1250 7.7899 24 14 4.1617 -1.2665 8.8645 25 1 4.3695 -2.6281 8.3093 26 1 5.4508 -0.7395 9.3800 27 1 3.1742 -1.3294 9.9718 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6054 -0.2618 -2.1369 32 1 1.7516 -1.7716 -1.2055 33 1 3.9994 -1.0729 -0.4259 34 1 3.8532 0.4368 -1.3573 35 1 3.4258 -1.7346 -3.1114 36 1 5.5874 -3.0994 -3.9637 37 1 5.4419 -1.5888 -4.8937 38 1 7.9638 -4.0192 -4.2156 39 1 2.2490 -1.6318 1.1527 40 1 1.9777 -1.5508 3.8326 41 1 3.6492 -1.1203 3.3979 42 1 3.4075 1.4695 8.6852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704123958.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:08 Heat of formation + Delta-G solvation = 46.980928 kcal Electronic energy + Delta-G solvation = -25970.066561 eV Core-core repulsion = 21921.669160 eV Total energy + Delta-G solvation = -4048.397402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.54797 -40.44349 -39.48867 -36.91554 -35.87148 -34.96096 -32.83511 -32.43819 -32.03490 -30.53009 -28.88490 -28.46009 -25.49751 -24.54776 -24.21826 -23.28032 -21.82169 -21.13372 -20.42017 -18.51772 -18.33709 -17.84570 -16.98537 -16.73826 -16.58339 -16.24260 -16.14687 -15.80145 -14.99133 -14.84382 -14.80107 -14.42882 -14.11134 -13.79214 -13.62952 -13.29586 -13.09853 -12.99902 -12.68612 -12.50218 -12.25460 -12.02317 -11.94503 -11.68000 -11.62121 -11.50553 -11.20665 -11.07413 -11.02860 -10.82455 -10.76213 -10.45440 -9.81718 -9.73730 -9.44155 -9.09087 -8.99748 -8.24797 -6.51061 -6.22593 -3.93158 0.81130 1.32724 1.82427 1.92947 2.38429 2.98530 3.04232 3.21269 3.27435 3.31706 3.53598 3.66144 3.75008 3.82282 4.02004 4.19438 4.26722 4.33455 4.50402 4.57409 4.99286 5.07423 5.09625 5.12795 5.19751 5.21734 5.26312 5.41475 5.50360 5.53058 5.58649 5.62275 5.74529 5.85479 5.91155 6.08297 6.11378 6.56860 6.70343 7.45232 7.58820 7.62619 8.24606 8.34448 8.55825 9.22948 10.84898 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.010351 B = 0.002077 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.279952 B =13477.141232 C =15603.175663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.092 0.908 4 C -0.136 4.136 5 C 0.116 3.884 6 N -0.723 5.723 7 C 0.496 3.504 8 O -0.500 6.500 9 C 0.097 3.903 10 N -0.303 5.303 11 C 0.160 3.840 12 N -0.305 5.305 13 N -0.075 5.075 14 N -0.062 5.062 15 N -0.737 5.737 16 C 0.534 3.466 17 O -0.515 6.515 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.279 1.279 27 H -0.280 1.280 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.403 0.597 36 H 0.144 0.856 37 H 0.136 0.864 38 H 0.236 0.764 39 H 0.396 0.604 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.725 -13.331 -29.871 32.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.175 4.175 5 C -0.006 4.006 6 N -0.376 5.376 7 C 0.278 3.722 8 O -0.373 6.373 9 C -0.029 4.029 10 N -0.106 5.106 11 C -0.139 4.139 12 N -0.152 5.152 13 N -0.069 5.069 14 N -0.049 5.049 15 N -0.392 5.392 16 C 0.320 3.680 17 O -0.388 6.388 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.206 1.206 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.237 0.763 36 H 0.162 0.838 37 H 0.154 0.846 38 H 0.252 0.748 39 H 0.230 0.770 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.679 -9.723 -29.054 30.755 hybrid contribution -0.378 -3.599 0.537 3.658 sum -3.057 -13.321 -28.517 31.623 Atomic orbital electron populations 1.22172 0.94894 1.02122 1.02938 1.20772 0.94257 0.97792 0.83127 0.88995 1.22109 0.94101 1.02189 0.99084 1.21517 0.93911 0.98273 0.86940 1.45828 1.06525 1.57500 1.27760 1.20171 0.83363 0.81753 0.86875 1.90928 1.54878 1.43424 1.48072 1.21969 0.74598 1.05642 1.00685 1.48153 1.09341 1.05246 1.47839 1.27766 0.85146 0.98323 1.02633 1.75015 1.20165 1.02027 1.18008 1.78719 1.07512 1.05824 1.14877 1.79045 0.99909 1.10224 1.15709 1.46135 1.69652 1.13827 1.09599 1.20311 0.76707 0.87223 0.83753 1.90706 1.48079 1.15725 1.84338 1.23537 1.03627 1.04888 0.98446 1.85402 1.86213 1.12950 0.98760 1.22897 1.50935 0.98179 0.96320 0.90912 1.24998 0.95091 0.95555 0.97992 1.70024 1.45550 1.13215 1.21448 0.86113 0.78559 0.80105 0.80688 1.19644 1.20527 1.20562 0.91834 0.92518 0.91356 0.89575 0.90498 0.90502 0.90586 0.76299 0.83828 0.84617 0.74794 0.76977 0.89272 0.89284 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.48 37.16 0.35 -1.06 16 2 C 0.15 1.33 2.57 -67.93 -0.17 1.16 16 3 H 0.09 1.07 7.58 -51.93 -0.39 0.67 16 4 C -0.14 -0.63 4.87 -26.73 -0.13 -0.76 16 5 C 0.12 0.79 5.56 -4.04 -0.02 0.76 16 6 N -0.72 -2.72 5.56 -60.30 -0.33 -3.06 16 7 C 0.50 3.24 7.85 -10.98 -0.09 3.15 16 8 O -0.50 -6.61 15.71 5.56 0.09 -6.52 16 9 C 0.10 0.19 6.96 -5.19 -0.04 0.15 16 10 N -0.30 -2.16 3.19 -63.73 -0.20 -2.36 16 11 C 0.16 0.98 12.79 -90.39 -1.16 -0.18 16 12 N -0.31 -3.41 12.36 29.59 0.37 -3.04 16 13 N -0.08 -1.03 13.43 60.35 0.81 -0.22 16 14 N -0.06 -0.76 12.30 60.35 0.74 -0.02 16 15 N -0.74 -8.45 4.53 -53.81 -0.24 -8.69 16 16 C 0.53 9.39 7.81 -10.98 -0.09 9.30 16 17 O -0.51 -11.20 15.53 5.56 0.09 -11.11 16 18 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 20 C -0.54 -15.27 9.50 30.94 0.29 -14.97 16 21 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 24 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.08 0.69 7.75 -51.93 -0.40 0.28 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.40 -0.19 8.47 -40.82 -0.35 -0.54 16 36 H 0.14 -0.46 8.08 -51.93 -0.42 -0.87 16 37 H 0.14 -0.14 8.14 -51.93 -0.42 -0.56 16 38 H 0.24 -0.03 8.06 -52.49 -0.42 -0.45 16 39 H 0.40 3.41 8.60 -40.82 -0.35 3.05 16 40 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 384.25 15.07 5.79 5.79 Total: -1.00 -44.16 384.25 -6.00 -50.17 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -5.68 Total: -4.82 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -0.92 Total: -3.27 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 1.87 Total: -42.91 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.17 Total: -17.63 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -44.16 -6.00 -50.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704123958.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.150 kcal (2) G-P(sol) polarization free energy of solvation -44.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds