Wall clock time and date at job start Wed Apr 1 2020 02:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.47177 * 2 1 4 4 C 1.52995 * 109.47016 * 120.00240 * 2 1 3 5 5 C 1.53002 * 109.47189 * 184.99674 * 4 2 1 6 6 C 1.52995 * 109.47082 * 179.97438 * 5 4 2 7 7 N 1.46505 * 109.46896 * 179.97438 * 6 5 4 8 8 C 1.36943 * 120.00093 * 180.02562 * 7 6 5 9 9 H 1.08006 * 119.99526 * 0.02562 * 8 7 6 10 10 C 1.38803 * 120.00103 * 180.02562 * 8 7 6 11 11 N 1.31619 * 120.00275 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99935 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47116 * 60.00003 * 12 10 8 14 14 H 1.48505 * 109.47003 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47094 * 299.99796 * 12 10 8 16 16 N 1.46507 * 109.46949 * 239.99842 * 2 1 3 17 17 C 1.34775 * 119.99654 * 85.00278 * 16 2 1 18 18 O 1.21280 * 120.00029 * 359.97438 * 17 16 2 19 19 C 1.50704 * 119.99928 * 180.02562 * 17 16 2 20 20 C 1.50691 * 109.47185 * 179.97438 * 19 17 16 21 21 C 1.38270 * 119.96843 * 89.99679 * 20 19 17 22 22 C 1.38200 * 120.04719 * 180.02562 * 21 20 19 23 23 C 1.38437 * 119.98692 * 359.97438 * 22 21 20 24 24 F 1.35107 * 120.02847 * 179.97438 * 23 22 21 25 25 C 1.38553 * 119.94400 * 359.97438 * 23 22 21 26 26 Cl 1.73599 * 120.02577 * 179.97438 * 25 23 22 27 27 C 1.38218 * 119.97329 * 270.23094 * 20 19 17 28 28 H 1.08997 * 109.46755 * 59.99650 * 1 2 3 29 29 H 1.08994 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46570 * 300.00108 * 1 2 3 31 31 H 1.08999 * 109.47453 * 304.99594 * 4 2 1 32 32 H 1.09001 * 109.47503 * 64.99490 * 4 2 1 33 33 H 1.08998 * 109.47335 * 300.00061 * 5 4 2 34 34 H 1.09000 * 109.46636 * 60.00192 * 5 4 2 35 35 H 1.08999 * 109.47818 * 300.00078 * 6 5 4 36 36 H 1.09008 * 109.47115 * 60.00445 * 6 5 4 37 37 H 0.97000 * 120.00350 * 0.02562 * 7 6 5 38 38 H 0.96996 * 120.00351 * 180.02562 * 11 10 8 39 39 H 0.96999 * 120.00064 * 265.00324 * 16 2 1 40 40 H 1.08997 * 109.47061 * 59.99254 * 19 17 16 41 41 H 1.09003 * 109.46474 * 299.99661 * 19 17 16 42 42 H 1.07993 * 119.97788 * 0.02562 * 21 20 19 43 43 H 1.07996 * 120.00149 * 179.97438 * 22 21 20 44 44 H 1.08000 * 119.98713 * 359.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6134 1.3136 6 6 4.0748 -1.3342 2.5632 7 7 5.5349 -1.2314 2.6245 8 6 6.2188 -1.8058 3.6627 9 1 5.6816 -2.3349 4.4360 10 6 7.6021 -1.7079 3.7211 11 7 8.2567 -1.0635 2.7784 12 14 8.5350 -2.4921 5.1368 13 1 8.2779 -3.9546 5.1493 14 1 9.9898 -2.2471 4.9670 15 1 8.0789 -1.8984 6.4193 16 7 2.0184 -0.6907 -1.1962 17 6 2.1471 -0.0183 -2.3571 18 8 1.8583 1.1584 -2.4117 19 6 2.6489 -0.7288 -3.5878 20 6 2.6991 0.2393 -4.7414 21 6 3.8473 0.9724 -4.9784 22 6 3.8950 1.8612 -6.0357 23 6 2.7927 2.0174 -6.8585 24 9 2.8382 2.8865 -7.8920 25 6 1.6428 1.2819 -6.6212 26 17 0.2590 1.4766 -7.6513 27 6 1.5958 0.3974 -5.5588 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.6055 -0.2618 2.1369 32 1 1.7516 -1.7715 1.2056 33 1 3.9995 -1.0729 0.4259 34 1 3.8532 0.4368 1.3573 35 1 3.6402 -0.8743 3.4507 36 1 3.7864 -2.3845 2.5199 37 1 6.0174 -0.7565 1.9298 38 1 9.2234 -0.9955 2.8190 39 1 2.2490 -1.6318 -1.1527 40 1 1.9760 -1.5506 -3.8326 41 1 3.6480 -1.1214 -3.3986 42 1 4.7074 0.8504 -4.3369 43 1 4.7920 2.4337 -6.2198 44 1 0.6984 -0.1733 -5.3706 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717684515.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:13 Heat of formation + Delta-G solvation = -72.746968 kcal Electronic energy + Delta-G solvation = -26134.759976 eV Core-core repulsion = 22026.914364 eV Total energy + Delta-G solvation = -4107.845612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.26025 -40.40737 -39.18553 -37.01024 -36.71086 -34.86779 -33.14403 -32.48818 -31.35296 -31.08440 -29.44280 -27.64671 -25.68639 -23.58474 -23.23802 -22.51759 -21.09337 -20.80340 -20.53830 -18.15819 -17.33329 -17.11925 -17.03309 -16.70398 -16.05988 -15.96649 -15.30805 -14.77100 -14.68078 -14.37475 -14.29271 -14.05241 -13.91205 -13.72409 -13.50602 -13.22454 -13.04179 -12.85875 -12.54434 -12.26964 -12.18901 -12.09349 -11.78404 -11.70652 -11.34001 -11.28947 -11.19340 -10.86736 -10.83241 -10.51080 -10.44219 -10.06665 -10.01069 -9.70602 -9.36077 -9.16563 -8.93167 -8.88270 -6.93734 -5.78054 -3.06852 0.57578 0.70322 1.63836 2.49798 2.85248 3.26476 3.42483 3.46721 3.47959 3.72180 4.12726 4.26534 4.52753 4.62617 4.63379 4.71809 4.78864 4.90390 5.01352 5.11440 5.11841 5.27054 5.38414 5.45491 5.50684 5.53456 5.55459 5.59403 5.70208 5.75329 5.91966 5.98444 6.02714 6.08216 6.17507 6.29859 6.32492 6.37735 6.43359 6.83416 6.86959 7.37172 7.67501 8.09584 8.41168 9.51853 10.10622 10.44861 11.44851 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.015506 B = 0.001899 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.363263 B =14742.176874 C =16175.735201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.088 0.912 4 C -0.123 4.123 5 C -0.125 4.125 6 C 0.152 3.848 7 N -0.734 5.734 8 C -0.240 4.240 9 H 0.069 0.931 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.908 3.092 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 N -0.721 5.721 17 C 0.515 3.485 18 O -0.534 6.534 19 C -0.106 4.106 20 C -0.061 4.061 21 C -0.069 4.069 22 C -0.139 4.139 23 C 0.107 3.893 24 F -0.129 7.129 25 C -0.073 4.073 26 Cl -0.053 7.053 27 C -0.069 4.069 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.017 0.983 36 H 0.016 0.984 37 H 0.383 0.617 38 H 0.256 0.744 39 H 0.402 0.598 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.142 0.858 43 H 0.147 0.853 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.778 1.345 -19.868 26.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.106 0.894 4 C -0.161 4.161 5 C -0.163 4.163 6 C 0.025 3.975 7 N -0.378 5.378 8 C -0.372 4.372 9 H 0.087 0.913 10 C -0.211 4.211 11 N -0.583 5.583 12 Si 0.739 3.261 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 N -0.373 5.373 17 C 0.300 3.700 18 O -0.410 6.410 19 C -0.145 4.145 20 C -0.062 4.062 21 C -0.087 4.087 22 C -0.158 4.158 23 C 0.087 3.913 24 F -0.107 7.107 25 C -0.100 4.100 26 Cl -0.024 7.024 27 C -0.087 4.087 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.034 0.966 37 H 0.216 0.784 38 H 0.065 0.935 39 H 0.236 0.764 40 H 0.125 0.875 41 H 0.131 0.869 42 H 0.160 0.840 43 H 0.164 0.836 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.071 2.171 -19.874 26.289 hybrid contribution 0.737 -0.541 0.351 0.979 sum -16.333 1.630 -19.523 25.507 Atomic orbital electron populations 1.22169 0.95477 1.01958 1.02424 1.21046 0.93568 0.97804 0.83879 0.89350 1.21853 0.96895 1.00766 0.96628 1.21724 0.93616 1.01429 0.99490 1.20652 0.86194 0.96437 0.94239 1.42372 1.00176 1.66270 1.29028 1.19198 0.89442 1.27181 1.01344 0.91267 1.24753 0.96465 1.01221 0.98674 1.69647 1.07270 1.46976 1.34416 0.86255 0.78973 0.78958 0.81924 1.21272 1.21664 1.21259 1.46102 1.67344 1.14198 1.09638 1.20397 0.77811 0.87410 0.84344 1.90741 1.49527 1.15807 1.84933 1.20712 1.05050 0.97787 0.90989 1.19276 0.93409 0.97918 0.95594 1.21055 0.98250 0.93574 0.95794 1.21127 0.97919 1.00964 0.95751 1.17427 0.94209 0.91647 0.88061 1.91540 1.96769 1.66755 1.55646 1.20896 0.89375 1.02257 0.97511 1.98386 1.40926 1.96779 1.66358 1.20771 0.98881 0.96783 0.92312 0.92369 0.92536 0.91566 0.90304 0.91405 0.92061 0.91994 0.96522 0.96580 0.78356 0.93459 0.76392 0.87454 0.86931 0.84041 0.83566 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.48 37.16 0.35 -1.13 16 2 C 0.14 1.47 2.57 -67.92 -0.17 1.29 16 3 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 4 C -0.12 -1.34 4.75 -26.73 -0.13 -1.46 16 5 C -0.12 -1.85 5.22 -26.73 -0.14 -1.99 16 6 C 0.15 2.95 6.26 -4.04 -0.03 2.93 16 7 N -0.73 -18.54 5.60 -59.90 -0.34 -18.88 16 8 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 9 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 10 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 11 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 12 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 N -0.72 -6.57 4.53 -53.80 -0.24 -6.81 16 17 C 0.51 5.30 7.79 -10.98 -0.09 5.22 16 18 O -0.53 -7.72 15.70 5.56 0.09 -7.63 16 19 C -0.11 -0.73 5.83 -29.04 -0.17 -0.89 16 20 C -0.06 -0.53 4.37 -104.62 -0.46 -0.98 16 21 C -0.07 -0.59 9.70 -39.58 -0.38 -0.97 16 22 C -0.14 -1.23 10.03 -39.52 -0.40 -1.62 16 23 C 0.11 1.09 7.28 -39.39 -0.29 0.80 16 24 F -0.13 -1.41 16.84 2.25 0.04 -1.37 16 25 C -0.07 -0.73 6.33 -39.44 -0.25 -0.98 16 26 Cl -0.05 -0.51 28.62 -51.86 -1.48 -2.00 16 27 C -0.07 -0.61 9.48 -39.56 -0.38 -0.98 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.90 7.75 -51.93 -0.40 0.49 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.02 0.31 8.14 -51.92 -0.42 -0.11 16 37 H 0.38 10.16 7.67 -40.82 -0.31 9.85 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.40 2.78 8.60 -40.82 -0.35 2.43 16 40 H 0.11 0.46 8.09 -51.93 -0.42 0.04 16 41 H 0.11 0.60 8.09 -51.93 -0.42 0.18 16 42 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 393.02 15.07 5.92 5.92 Total: -1.00 -33.93 393.02 -9.58 -43.50 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.50 Total: 5.67 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -2.76 Total: -8.20 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.15 Total: -53.16 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.09 Total: -7.63 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.48 Total: -2.00 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.93 -9.58 -43.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717684515.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.246 kcal (2) G-P(sol) polarization free energy of solvation -33.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds