Wall clock time and date at job start Wed Apr 1 2020 00:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46752 * 2 1 4 4 N 1.34242 * 126.27900 * 264.99445 * 3 2 1 5 5 H 0.97000 * 125.73566 * 0.02760 * 4 3 2 6 6 N 1.39929 * 108.52258 * 180.02562 * 4 3 2 7 7 C 1.30531 * 108.89463 * 359.75745 * 6 4 3 8 8 Cl 1.73602 * 126.00336 * 180.22863 * 7 6 4 9 9 C 1.38067 * 126.28439 * 85.00068 * 3 2 1 10 10 C 1.47385 * 126.42416 * 359.95730 * 9 3 2 11 11 O 1.21605 * 119.99900 * 90.00143 * 10 9 3 12 12 N 1.34775 * 119.99863 * 269.73354 * 10 9 3 13 13 C 1.46499 * 119.99896 * 175.67223 * 12 10 9 14 14 C 1.53006 * 112.94057 * 295.32560 * 13 12 10 15 15 C 1.52996 * 109.47234 * 303.36477 * 14 13 12 16 16 O 1.42902 * 109.47268 * 184.67878 * 15 14 13 17 17 C 1.53945 * 113.74262 * 163.73763 * 13 12 10 18 18 N 1.47816 * 86.03605 * 222.08211 * 17 13 12 19 19 C 1.36940 * 134.45634 * 204.65193 * 18 17 13 20 20 H 1.08002 * 119.99887 * 179.86676 * 19 18 17 21 21 C 1.38814 * 120.00024 * 359.85670 * 19 18 17 22 22 N 1.31616 * 119.99954 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99926 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46984 * 60.00456 * 23 21 19 25 25 H 1.48499 * 109.46811 * 179.97438 * 23 21 19 26 26 H 1.48487 * 109.47087 * 300.00167 * 23 21 19 27 27 C 1.47579 * 91.05205 * 24.54573 * 18 17 13 28 28 H 1.08999 * 109.46771 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47152 * 300.00232 * 1 2 3 30 30 H 1.08998 * 109.47084 * 60.00483 * 1 2 3 31 31 H 1.08996 * 109.47152 * 239.99767 * 2 1 3 32 32 H 1.08998 * 109.47084 * 119.99516 * 2 1 3 33 33 H 0.97002 * 120.00220 * 355.65775 * 12 10 9 34 34 H 1.09002 * 109.47011 * 63.36581 * 14 13 12 35 35 H 1.09001 * 109.46967 * 183.36158 * 14 13 12 36 36 H 1.09000 * 109.47035 * 304.67652 * 15 14 13 37 37 H 1.08998 * 109.46962 * 64.67620 * 15 14 13 38 38 H 0.96690 * 114.00143 * 179.97438 * 16 15 14 39 39 H 1.08998 * 113.76804 * 336.34492 * 17 13 12 40 40 H 1.09000 * 113.77008 * 107.74850 * 17 13 12 41 41 H 0.97001 * 119.99955 * 179.97438 * 22 21 19 42 42 H 1.09000 * 113.77357 * 221.15227 * 27 18 17 43 43 H 1.09005 * 113.76603 * 89.75458 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3860 2.1383 -1.0781 5 1 2.3618 1.8292 -1.9972 6 7 2.7956 3.4070 -0.6529 7 6 2.6923 3.4710 0.6468 8 17 3.0788 4.8451 1.6347 9 6 2.2131 2.2235 1.1087 10 6 1.9507 1.8517 2.5105 11 8 2.8313 1.3481 3.1810 12 7 0.7363 2.0747 3.0508 13 6 0.4457 1.6197 4.4127 14 6 0.4761 0.0962 4.5516 15 6 -0.5102 -0.5260 3.5612 16 8 -0.5624 -1.9394 3.7653 17 6 -0.8030 2.2737 5.0315 18 7 -0.0056 2.3823 6.2714 19 6 -0.3108 2.4690 7.6035 20 1 0.4803 2.5392 8.3354 21 6 -1.6371 2.4668 8.0133 22 7 -2.6012 2.3809 7.1214 23 14 -2.0535 2.5857 9.8304 24 1 -1.5102 3.8534 10.3807 25 1 -3.5283 2.5638 10.0026 26 1 -1.4532 1.4352 10.5521 27 6 1.2510 2.3572 5.4978 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 0.0547 2.5368 2.5381 34 1 1.4815 -0.2679 4.3404 35 1 0.1950 -0.1816 5.5674 36 1 -1.5008 -0.0994 3.7184 37 1 -0.1824 -0.3178 2.5427 38 1 -1.1696 -2.4005 3.1706 39 1 -1.0600 3.2360 4.5888 40 1 -1.6562 1.6005 5.1142 41 1 -3.5280 2.3790 7.4077 42 1 2.0345 1.7506 5.9519 43 1 1.5986 3.3441 5.1923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725202599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:59 Heat of formation + Delta-G solvation = 34.322514 kcal Electronic energy + Delta-G solvation = -28871.095088 eV Core-core repulsion = 24787.812319 eV Total energy + Delta-G solvation = -4083.282769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.78773 -39.74948 -37.61404 -36.95706 -36.39611 -34.50951 -33.57328 -32.09096 -31.40580 -30.43252 -29.50070 -27.06413 -25.03042 -24.69703 -23.45907 -22.56762 -22.10097 -21.35670 -19.68292 -18.62207 -18.08786 -17.09436 -16.75695 -16.57400 -15.78661 -15.52924 -15.22686 -15.02244 -14.67209 -14.58718 -14.32642 -13.97716 -13.75328 -13.62173 -13.32480 -12.97604 -12.48810 -12.27499 -12.09060 -11.90012 -11.75857 -11.67458 -11.57233 -11.52985 -11.03549 -10.91111 -10.87329 -10.73719 -10.69488 -10.20634 -9.91607 -9.71946 -9.67955 -9.57854 -9.24306 -8.96743 -8.86394 -8.56348 -6.89659 -5.77965 -3.09208 1.27161 1.29101 1.98966 2.62438 2.79191 3.41849 3.45687 3.46521 3.57092 4.13330 4.42593 4.46167 4.49346 4.72512 4.80813 4.99374 5.09999 5.17583 5.25567 5.27387 5.42414 5.50008 5.52000 5.61718 5.67362 5.71174 5.83800 5.86484 6.00648 6.36012 6.47763 6.57540 6.67979 6.69486 6.76364 6.86337 7.01639 7.13753 7.33594 7.50392 7.85101 7.87874 7.96923 8.54474 9.04179 9.70390 10.56967 11.39698 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.013452 B = 0.003762 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.999662 B = 7440.334681 C = 8867.485341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.069 4.069 3 C 0.144 3.856 4 N -0.448 5.448 5 H 0.446 0.554 6 N -0.279 5.279 7 C 0.159 3.841 8 Cl 0.024 6.976 9 C -0.262 4.262 10 C 0.594 3.406 11 O -0.522 6.522 12 N -0.704 5.704 13 C 0.123 3.877 14 C -0.095 4.095 15 C 0.077 3.923 16 O -0.573 6.573 17 C 0.167 3.833 18 N -0.604 5.604 19 C -0.218 4.218 20 H 0.082 0.918 21 C -0.006 4.006 22 N -0.923 5.923 23 Si 0.912 3.088 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.128 3.872 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.397 0.603 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.049 0.951 37 H 0.040 0.960 38 H 0.370 0.630 39 H 0.031 0.969 40 H 0.082 0.918 41 H 0.254 0.746 42 H 0.052 0.948 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.918 -4.044 -20.556 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.109 4.109 3 C 0.012 3.988 4 N -0.157 5.157 5 H 0.292 0.708 6 N -0.104 5.104 7 C -0.034 4.034 8 Cl 0.052 6.948 9 C -0.277 4.277 10 C 0.377 3.623 11 O -0.397 6.397 12 N -0.355 5.355 13 C 0.037 3.963 14 C -0.134 4.134 15 C 0.000 4.000 16 O -0.377 6.377 17 C 0.041 3.959 18 N -0.331 5.331 19 C -0.346 4.346 20 H 0.099 0.901 21 C -0.202 4.202 22 N -0.570 5.570 23 Si 0.743 3.257 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.210 1.210 27 C 0.002 3.998 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.231 0.769 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.216 0.784 39 H 0.049 0.951 40 H 0.100 0.900 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.138 -3.471 -20.216 21.410 hybrid contribution -1.139 0.135 0.427 1.224 sum 4.999 -3.335 -19.789 20.681 Atomic orbital electron populations 1.21869 0.92998 1.03114 1.03038 1.20416 0.97291 0.88030 1.05116 1.21420 0.96198 0.95197 0.86027 1.45826 1.51722 1.09274 1.08904 0.70760 1.77145 1.23363 0.98956 1.10970 1.22615 0.99988 0.90274 0.90515 1.98441 1.92390 1.39053 1.64924 1.19977 1.18270 0.94301 0.95192 1.17086 0.82708 0.78233 0.84239 1.90795 1.44174 1.43131 1.61619 1.46204 1.13668 1.58785 1.16852 1.22991 1.00775 0.93733 0.78776 1.21327 0.99301 0.91786 1.00948 1.22260 0.99367 0.80387 0.97968 1.86516 1.67845 1.20272 1.63103 1.22575 0.92516 0.96666 0.84116 1.45702 1.00674 1.85812 1.00913 1.18960 0.91867 1.43537 0.80240 0.90071 1.24742 0.95341 1.02337 0.97800 1.69770 0.98814 1.56613 1.31837 0.86190 0.77067 0.78003 0.84469 1.21220 1.21599 1.21007 1.22803 0.91124 0.96495 0.89417 0.91025 0.91191 0.92295 0.89685 0.88084 0.76913 0.90922 0.89001 0.93320 0.94181 0.78421 0.95141 0.90013 0.93610 0.92986 0.94494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.33 37.16 0.35 -0.61 16 2 C -0.07 -0.49 6.27 -27.88 -0.17 -0.67 16 3 C 0.14 1.40 6.55 -81.60 -0.53 0.86 16 4 N -0.45 -3.85 7.28 33.86 0.25 -3.60 16 5 H 0.45 2.06 8.96 -182.73 -1.64 0.42 16 6 N -0.28 -3.37 12.64 33.18 0.42 -2.95 16 7 C 0.16 2.13 7.89 -16.91 -0.13 1.99 16 8 Cl 0.02 0.32 29.19 -51.86 -1.51 -1.19 16 9 C -0.26 -3.43 5.88 -105.04 -0.62 -4.05 16 10 C 0.59 9.23 6.92 -12.54 -0.09 9.15 16 11 O -0.52 -10.01 15.48 5.27 0.08 -9.93 16 12 N -0.70 -10.54 4.69 -50.15 -0.24 -10.78 16 13 C 0.12 2.28 0.66 -134.03 -0.09 2.19 16 14 C -0.10 -1.75 4.82 -26.73 -0.13 -1.87 16 15 C 0.08 1.14 6.79 37.16 0.25 1.40 16 16 O -0.57 -8.33 13.66 -35.23 -0.48 -8.82 16 17 C 0.17 3.68 6.64 -2.84 -0.02 3.67 16 18 N -0.60 -15.25 3.55 -177.49 -0.63 -15.88 16 19 C -0.22 -6.08 10.70 -15.06 -0.16 -6.24 16 20 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 21 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 22 N -0.92 -26.46 11.39 55.49 0.63 -25.83 16 23 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 C 0.13 2.79 7.57 -2.97 -0.02 2.77 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.55 6.43 -51.93 -0.33 0.22 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 33 H 0.40 5.11 8.69 -40.82 -0.35 4.75 16 34 H 0.07 1.39 7.04 -51.93 -0.37 1.02 16 35 H 0.09 1.99 8.02 -51.93 -0.42 1.58 16 36 H 0.05 0.74 7.34 -51.93 -0.38 0.36 16 37 H 0.04 0.49 5.42 -51.93 -0.28 0.21 16 38 H 0.37 3.39 9.12 45.56 0.42 3.80 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.96 6.46 -51.93 -0.34 1.63 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.05 1.16 8.10 -51.93 -0.42 0.74 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -34.73 374.76 -8.51 -43.24 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -6.19 Total: 4.76 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -1.46 Total: 8.32 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.43 Total: -59.04 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.40 Total: -18.74 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -1.51 Total: -1.19 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.73 -8.51 -43.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725202599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.563 kcal (2) G-P(sol) polarization free energy of solvation -34.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds