Wall clock time and date at job start Wed Apr 1 2020 02:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.80074 * 2 1 4 4 C 1.54938 * 110.73951 * 236.71048 * 2 1 3 5 5 N 1.48125 * 103.25746 * 279.03895 * 4 2 1 6 6 C 1.34777 * 127.03219 * 140.74061 * 5 4 2 7 7 O 1.21585 * 120.00055 * 353.25506 * 6 5 4 8 8 C 1.47578 * 119.99664 * 173.25734 * 6 5 4 9 9 C 1.39759 * 120.12889 * 349.53247 * 8 6 5 10 10 C 1.37925 * 119.87019 * 179.72129 * 9 8 6 11 11 F 1.35098 * 119.92283 * 180.29198 * 10 9 8 12 12 C 1.38941 * 120.14397 * 0.53014 * 10 9 8 13 13 F 1.35104 * 119.86101 * 179.74431 * 12 10 9 14 14 C 1.38448 * 120.27056 * 359.76502 * 12 10 9 15 15 C 1.38208 * 120.12188 * 359.95494 * 14 12 10 16 16 F 1.35095 * 120.07586 * 180.02562 * 15 14 12 17 17 C 1.47488 * 105.93069 * 320.71039 * 5 4 2 18 18 C 1.54001 * 107.08575 * 25.44235 * 17 5 4 19 19 H 1.08999 * 110.33184 * 239.70221 * 18 17 5 20 20 C 1.53008 * 110.32587 * 117.58541 * 18 17 5 21 21 N 1.46495 * 109.46529 * 66.45765 * 20 18 17 22 22 C 1.36942 * 119.99313 * 180.27592 * 21 20 18 23 23 H 1.07992 * 120.00263 * 359.72488 * 22 21 20 24 24 C 1.38814 * 119.99461 * 179.72354 * 22 21 20 25 25 N 1.31615 * 120.00634 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99731 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47167 * 89.99773 * 26 24 22 28 28 H 1.48502 * 109.46933 * 210.00055 * 26 24 22 29 29 H 1.48506 * 109.46836 * 329.99613 * 26 24 22 30 30 H 1.08998 * 109.46667 * 296.70831 * 1 2 3 31 31 H 1.08993 * 109.46850 * 56.70902 * 1 2 3 32 32 H 1.08999 * 109.47103 * 176.70699 * 1 2 3 33 33 H 1.08996 * 110.66502 * 160.60021 * 4 2 1 34 34 H 1.09002 * 110.80751 * 37.54812 * 4 2 1 35 35 H 1.07993 * 120.06188 * 359.97335 * 9 8 6 36 36 H 1.07997 * 119.93773 * 179.97438 * 14 12 10 37 37 H 1.09003 * 109.91080 * 266.08225 * 17 5 4 38 38 H 1.08994 * 110.07202 * 144.89183 * 17 5 4 39 39 H 1.08999 * 109.47147 * 306.45432 * 20 18 17 40 40 H 1.09000 * 109.46840 * 186.45455 * 20 18 17 41 41 H 0.97001 * 120.00815 * 359.97438 * 21 20 18 42 42 H 0.96996 * 120.00384 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0787 -0.7953 -1.2112 5 7 1.9871 -2.2039 -0.7623 6 6 1.6234 -3.2698 -1.5026 7 8 1.2092 -3.1109 -2.6347 8 6 1.7277 -4.6297 -0.9391 9 6 2.4011 -4.8394 0.2674 10 6 2.4904 -6.1118 0.7922 11 9 3.1361 -6.3148 1.9614 12 6 1.9221 -7.1858 0.1185 13 9 2.0175 -8.4306 0.6351 14 6 1.2589 -6.9858 -1.0803 15 6 1.1578 -5.7146 -1.6133 16 9 0.5100 -5.5204 -2.7827 17 6 2.3763 -2.2015 0.6603 18 6 2.0776 -0.7938 1.2087 19 1 2.9907 -0.3322 1.5845 20 6 1.0252 -0.8674 2.3170 21 7 1.5802 -1.5795 3.4707 22 6 0.8137 -1.7739 4.5887 23 1 -0.1983 -1.3984 4.6215 24 6 1.3376 -2.4537 5.6797 25 7 2.5708 -2.9118 5.6395 26 14 0.2918 -2.7196 7.2045 27 1 -0.4508 -3.9994 7.0785 28 1 1.1677 -2.7714 8.4026 29 1 -0.6729 -1.5993 7.3446 30 1 -0.3632 0.4619 0.9180 31 1 -0.3633 0.5640 -0.8590 32 1 -0.3633 -1.0260 -0.0590 33 1 3.1145 -0.5226 -1.4131 34 1 1.4603 -0.6320 -2.0939 35 1 2.8472 -4.0061 0.7899 36 1 0.8195 -7.8246 -1.5996 37 1 3.4403 -2.4186 0.7545 38 1 1.7961 -2.9441 1.2081 39 1 0.1474 -1.3989 1.9497 40 1 0.7407 0.1417 2.6153 41 1 2.4891 -1.9171 3.4411 42 1 2.9367 -3.3872 6.4017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733554681.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:07 Heat of formation + Delta-G solvation = -123.055206 kcal Electronic energy + Delta-G solvation = -30704.357841 eV Core-core repulsion = 26042.534020 eV Total energy + Delta-G solvation = -4661.823821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.75961 -50.22594 -49.81604 -41.77834 -39.79652 -38.92378 -36.37848 -34.50446 -33.26520 -32.15715 -31.39706 -30.50490 -28.12130 -26.99662 -25.75171 -24.61104 -24.36976 -23.01621 -21.23647 -20.54222 -19.50129 -19.37943 -18.95874 -18.59888 -17.83112 -17.77027 -17.47599 -17.04963 -16.74732 -16.67201 -16.27506 -16.20557 -15.87462 -15.63754 -15.53689 -15.33446 -15.14849 -14.74350 -14.60796 -14.27912 -14.18180 -13.65976 -13.59693 -13.26513 -13.15893 -13.04849 -12.93731 -12.80682 -12.71416 -12.55137 -12.15993 -11.85954 -11.60022 -11.51127 -11.37070 -11.23606 -10.87434 -10.51011 -10.04057 -9.74221 -8.93936 -7.91900 -5.18723 -0.93245 -0.47603 1.27407 1.48652 1.49556 1.57125 1.67690 2.12228 2.29940 2.57841 2.64726 2.96144 3.04136 3.16898 3.40912 3.47424 3.60425 3.67551 3.80199 4.10174 4.16419 4.22825 4.23384 4.32364 4.39521 4.47595 4.51469 4.58607 4.62059 4.72195 4.74971 4.84908 4.86744 5.00714 5.02624 5.19614 5.25250 5.29987 5.34790 5.52629 5.55701 6.26250 6.31024 6.83607 7.38954 8.14055 8.37728 9.30744 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.008438 B = 0.004795 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3317.684791 B = 5837.585631 C = 8396.849192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 H 0.120 0.880 4 C 0.108 3.892 5 N -0.605 5.605 6 C 0.578 3.422 7 O -0.557 6.557 8 C -0.161 4.161 9 C -0.080 4.080 10 C 0.045 3.955 11 F -0.128 7.128 12 C 0.127 3.873 13 F -0.115 7.115 14 C -0.153 4.153 15 C 0.174 3.826 16 F -0.110 7.110 17 C 0.089 3.911 18 C -0.097 4.097 19 H 0.100 0.900 20 C 0.162 3.838 21 N -0.742 5.742 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.066 4.066 25 N -0.961 5.961 26 Si 0.960 3.040 27 H -0.292 1.292 28 H -0.296 1.296 29 H -0.271 1.271 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.033 0.967 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.185 0.815 36 H 0.200 0.800 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.017 0.983 40 H 0.027 0.973 41 H 0.377 0.623 42 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.677 -1.668 -16.417 16.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 H 0.138 0.862 4 C -0.013 4.013 5 N -0.337 5.337 6 C 0.368 3.632 7 O -0.438 6.438 8 C -0.166 4.166 9 C -0.099 4.099 10 C 0.024 3.976 11 F -0.106 7.106 12 C 0.106 3.894 13 F -0.093 7.093 14 C -0.172 4.172 15 C 0.153 3.847 16 F -0.088 7.088 17 C -0.033 4.033 18 C -0.116 4.116 19 H 0.118 0.882 20 C 0.036 3.964 21 N -0.385 5.385 22 C -0.373 4.373 23 H 0.088 0.912 24 C -0.259 4.259 25 N -0.612 5.612 26 Si 0.790 3.210 27 H -0.219 1.219 28 H -0.223 1.223 29 H -0.196 1.196 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.202 0.798 36 H 0.217 0.783 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.035 0.965 40 H 0.045 0.955 41 H 0.209 0.791 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.277 -1.660 -16.948 17.031 hybrid contribution -0.142 -0.836 1.479 1.705 sum 0.135 -2.496 -15.469 15.669 Atomic orbital electron populations 1.21787 0.94829 1.00922 1.02400 1.22272 0.96161 1.00133 0.92062 0.86181 1.22810 1.02737 0.77867 0.97908 1.48651 1.65278 1.08119 1.11678 1.17458 0.77660 0.83473 0.84610 1.90820 1.47431 1.86062 1.19462 1.19832 1.05418 0.94009 0.97291 1.22215 0.96714 0.97142 0.93814 1.17715 1.00768 0.93789 0.85314 1.91606 1.78963 1.95542 1.44521 1.17524 0.99246 0.79237 0.93398 1.91591 1.93953 1.37664 1.86136 1.21056 1.02875 0.97904 0.95372 1.17282 0.92688 0.92235 0.82530 1.91617 1.77758 1.95701 1.43744 1.22745 1.00935 0.99436 0.80169 1.22287 1.00014 0.94228 0.95100 0.88152 1.20918 0.94535 0.94752 0.86205 1.42550 1.14957 1.67529 1.13483 1.19514 0.96149 1.28419 0.93242 0.91155 1.25377 0.97592 1.01888 1.01088 1.69756 1.15577 1.44231 1.31638 0.85341 0.77917 0.77846 0.79884 1.21919 1.22276 1.19634 0.92017 0.91229 0.94828 0.88151 0.89702 0.79792 0.78320 0.88856 0.90546 0.96466 0.95533 0.79088 0.94097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 7.99 71.98 0.58 -2.55 16 2 C -0.09 -1.70 3.60 -9.58 -0.03 -1.73 16 3 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 4 C 0.11 2.14 6.56 86.73 0.57 2.71 16 5 N -0.61 -15.15 3.19 -813.08 -2.59 -17.74 16 6 C 0.58 16.82 7.80 86.71 0.68 17.50 16 7 O -0.56 -19.09 15.59 -3.98 -0.06 -19.15 16 8 C -0.16 -4.28 5.86 -20.05 -0.12 -4.40 16 9 C -0.08 -2.10 8.30 22.56 0.19 -1.91 16 10 C 0.04 1.21 7.29 22.36 0.16 1.37 16 11 F -0.13 -4.14 17.17 44.97 0.77 -3.37 16 12 C 0.13 2.93 7.31 22.49 0.16 3.10 16 13 F -0.12 -2.74 17.17 44.97 0.77 -1.96 16 14 C -0.15 -2.94 9.99 22.31 0.22 -2.71 16 15 C 0.17 4.19 7.27 22.66 0.16 4.35 16 16 F -0.11 -2.94 15.60 44.97 0.70 -2.24 16 17 C 0.09 2.28 4.32 86.53 0.37 2.65 16 18 C -0.10 -2.45 3.00 -9.90 -0.03 -2.48 16 19 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 20 C 0.16 5.64 4.17 86.38 0.36 6.00 16 21 N -0.74 -33.99 5.33 -343.45 -1.83 -35.82 16 22 C -0.24 -12.75 9.99 84.03 0.84 -11.91 16 23 H 0.07 3.64 7.83 -2.91 -0.02 3.61 16 24 C -0.07 -3.66 5.50 84.86 0.47 -3.20 16 25 N -0.96 -56.08 13.06 21.65 0.28 -55.80 16 26 Si 0.96 45.01 29.55 68.60 2.03 47.03 16 27 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 28 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 29 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 30 H 0.06 1.42 6.67 -2.39 -0.02 1.40 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.03 0.89 7.61 -2.39 -0.02 0.87 16 33 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 1.78 7.72 -2.39 -0.02 1.76 16 35 H 0.19 4.78 3.54 -2.91 -0.01 4.77 16 36 H 0.20 2.41 8.06 -2.91 -0.02 2.38 16 37 H 0.09 2.07 7.35 -2.39 -0.02 2.05 16 38 H 0.08 2.35 5.49 -2.39 -0.01 2.33 16 39 H 0.02 0.64 6.85 -2.39 -0.02 0.63 16 40 H 0.03 0.94 7.55 -2.39 -0.02 0.92 16 41 H 0.38 17.99 7.51 -92.71 -0.70 17.30 16 42 H 0.25 14.34 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -66.47 353.98 5.06 -61.42 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.40 Total: 20.85 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 4.58 Total: 6.78 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -4.14 Total: -109.36 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.06 Total: -19.15 kcal Atomic # 9 Polarization: -9.82 SS G_CDS: 2.25 Total: -7.57 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -66.47 5.06 -61.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733554681.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.639 kcal (2) G-P(sol) polarization free energy of solvation -66.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds