Wall clock time and date at job start Wed Apr 1 2020 02:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.79964 * 2 1 4 4 C 1.55114 * 110.82865 * 123.33359 * 2 1 3 5 5 N 1.48114 * 103.31440 * 155.60185 * 4 2 1 6 6 C 1.34774 * 127.03735 * 140.80118 * 5 4 2 7 7 O 1.21588 * 119.99623 * 353.25148 * 6 5 4 8 8 C 1.47574 * 120.00133 * 173.25567 * 6 5 4 9 9 C 1.39734 * 120.13156 * 349.53709 * 8 6 5 10 10 C 1.37759 * 119.94380 * 179.74705 * 9 8 6 11 11 C 1.38721 * 120.21178 * 0.52905 * 10 9 8 12 12 F 1.35100 * 119.86684 * 179.69881 * 11 10 9 13 13 C 1.38669 * 120.26627 * 359.72785 * 11 10 9 14 14 F 1.35097 * 119.97318 * 179.97438 * 13 11 10 15 15 C 1.38384 * 120.04994 * 0.02562 * 13 11 10 16 16 F 1.35099 * 120.10269 * 179.97438 * 15 13 11 17 17 C 1.47488 * 105.93071 * 320.76331 * 5 4 2 18 18 C 1.54005 * 107.08435 * 25.44892 * 17 5 4 19 19 H 1.09003 * 110.32722 * 239.70174 * 18 17 5 20 20 C 1.52992 * 110.32682 * 117.58613 * 18 17 5 21 21 N 1.46500 * 109.47272 * 67.83803 * 20 18 17 22 22 C 1.36942 * 120.00176 * 180.27678 * 21 20 18 23 23 H 1.08000 * 119.99609 * 359.72180 * 22 21 20 24 24 C 1.38809 * 120.00207 * 179.72470 * 22 21 20 25 25 N 1.31618 * 120.00067 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00074 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47259 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.46994 * 119.99815 * 26 24 22 29 29 H 1.48500 * 109.47197 * 239.99785 * 26 24 22 30 30 H 1.09000 * 109.47485 * 183.29244 * 1 2 3 31 31 H 1.09000 * 109.47325 * 303.29286 * 1 2 3 32 32 H 1.08998 * 109.47099 * 63.28831 * 1 2 3 33 33 H 1.09003 * 110.58556 * 37.16245 * 4 2 1 34 34 H 1.09000 * 110.82183 * 274.15171 * 4 2 1 35 35 H 1.08002 * 120.03186 * 359.97438 * 9 8 6 36 36 H 1.08000 * 119.89767 * 180.27926 * 10 9 8 37 37 H 1.08996 * 109.91303 * 266.08693 * 17 5 4 38 38 H 1.08998 * 109.91223 * 144.80909 * 17 5 4 39 39 H 1.09000 * 109.47570 * 307.83591 * 20 18 17 40 40 H 1.09011 * 109.47136 * 187.83540 * 20 18 17 41 41 H 0.96995 * 120.00331 * 359.97438 * 21 20 18 42 42 H 0.96999 * 120.00253 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0190 0.0000 4 6 2.0816 -0.7967 1.2113 5 7 3.4297 -1.2128 0.7605 6 6 4.5561 -1.2533 1.4993 7 8 4.5566 -0.8103 2.6317 8 6 5.7889 -1.8350 0.9340 9 6 5.7434 -2.5381 -0.2727 10 6 6.8974 -3.0751 -0.7996 11 6 8.1039 -2.9297 -0.1304 12 9 9.2303 -3.4644 -0.6504 13 6 8.1581 -2.2383 1.0704 14 9 9.3361 -2.1008 1.7173 15 6 7.0064 -1.6901 1.6070 16 9 7.0580 -1.0167 2.7771 17 6 3.2870 -1.5748 -0.6621 18 6 2.0775 -0.7937 -1.2087 19 1 1.3203 -1.4821 -1.5839 20 6 2.5199 0.1638 -2.3169 21 7 2.9551 -0.6076 -3.4838 22 6 3.4031 0.0398 -4.6043 23 1 3.4313 1.1192 -4.6294 24 6 3.8208 -0.6912 -5.7079 25 7 3.7869 -2.0066 -5.6773 26 14 4.4312 0.1919 -7.2366 27 1 4.3700 1.6595 -7.0182 28 1 5.8338 -0.2097 -7.5135 29 1 3.5745 -0.1720 -8.3938 30 1 -0.3634 -1.0259 0.0590 31 1 -0.3634 0.5641 0.8590 32 1 -0.3633 0.4619 -0.9180 33 1 1.4578 -1.6674 1.4134 34 1 2.1504 -0.1611 2.0941 35 1 4.8050 -2.6572 -0.7939 36 1 6.8622 -3.6144 -1.7346 37 1 3.1105 -2.6462 -0.7567 38 1 4.1876 -1.2946 -1.2086 39 1 3.3463 0.7776 -1.9584 40 1 1.6849 0.8063 -2.5968 41 1 2.9302 -1.5769 -3.4613 42 1 4.0791 -2.5174 -6.4483 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754821219.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:18 Heat of formation + Delta-G solvation = -109.447612 kcal Electronic energy + Delta-G solvation = -30249.498234 eV Core-core repulsion = 25588.264483 eV Total energy + Delta-G solvation = -4661.233751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.94621 -49.34614 -48.60986 -40.67306 -38.71270 -37.78500 -34.72958 -33.34756 -31.68103 -30.96162 -30.82442 -29.16695 -26.72807 -25.88764 -24.22103 -23.45852 -23.14007 -21.30364 -20.24069 -20.11014 -18.39947 -18.30225 -17.94020 -17.21700 -17.00000 -16.45568 -16.22098 -15.92090 -15.67529 -15.45658 -15.09052 -14.98815 -14.71317 -14.60356 -14.50200 -14.07372 -13.71699 -13.63542 -13.31829 -12.95243 -12.84022 -12.75403 -12.43709 -12.18296 -12.10759 -11.94953 -11.78576 -11.48749 -11.17053 -10.94300 -10.70259 -10.51021 -10.44327 -10.10542 -10.05541 -9.77066 -9.25016 -9.20741 -8.99619 -8.75829 -7.05209 -5.88481 -3.17302 0.08893 0.47647 2.34927 2.62546 3.11001 3.19045 3.36602 3.43837 3.44837 3.86793 3.92345 4.01808 4.20278 4.37840 4.46416 4.59949 4.60502 4.81400 5.03113 5.16053 5.26445 5.27235 5.42077 5.46178 5.50364 5.51184 5.52318 5.61463 5.64996 5.70561 5.74136 5.86118 5.99273 6.04615 6.10459 6.19282 6.26488 6.33466 6.60763 6.71544 7.34157 7.61882 7.93716 8.30449 9.42701 9.96847 10.31943 11.34203 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.008189 B = 0.004306 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3418.333888 B = 6501.093376 C = 9332.303205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 H 0.086 0.914 4 C 0.111 3.889 5 N -0.611 5.611 6 C 0.582 3.418 7 O -0.528 6.528 8 C -0.155 4.155 9 C -0.054 4.054 10 C -0.136 4.136 11 C 0.124 3.876 12 F -0.115 7.115 13 C 0.017 3.983 14 F -0.116 7.116 15 C 0.155 3.845 16 F -0.097 7.097 17 C 0.086 3.914 18 C -0.103 4.103 19 H 0.091 0.909 20 C 0.160 3.840 21 N -0.733 5.733 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.010 4.010 25 N -0.933 5.933 26 Si 0.904 3.096 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.182 0.818 36 H 0.166 0.834 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.021 0.979 40 H 0.025 0.975 41 H 0.383 0.617 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.027 -2.962 13.503 13.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 H 0.104 0.896 4 C -0.011 4.011 5 N -0.344 5.344 6 C 0.371 3.629 7 O -0.405 6.405 8 C -0.159 4.159 9 C -0.072 4.072 10 C -0.154 4.154 11 C 0.104 3.896 12 F -0.093 7.093 13 C -0.004 4.004 14 F -0.094 7.094 15 C 0.133 3.867 16 F -0.075 7.075 17 C -0.035 4.035 18 C -0.123 4.123 19 H 0.109 0.891 20 C 0.032 3.968 21 N -0.377 5.377 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.206 4.206 25 N -0.581 5.581 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.218 1.218 29 H -0.218 1.218 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.198 0.802 36 H 0.184 0.816 37 H 0.095 0.905 38 H 0.118 0.882 39 H 0.039 0.961 40 H 0.043 0.957 41 H 0.217 0.783 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.256 -2.575 14.114 14.349 hybrid contribution 0.963 0.133 -0.843 1.286 sum 1.218 -2.442 13.271 13.548 Atomic orbital electron populations 1.21720 0.93644 1.02085 1.02256 1.22327 0.96197 0.99821 0.93630 0.89610 1.22639 0.81550 0.98865 0.98076 1.48582 1.08222 1.65609 1.12017 1.17285 0.81633 0.79144 0.84863 1.90848 1.84090 1.47226 1.18352 1.19905 0.92748 1.05417 0.97816 1.22358 1.01115 0.91548 0.92159 1.21285 0.89625 1.02473 1.02054 1.17670 0.84166 0.96336 0.91475 1.91588 1.48864 1.83222 1.85601 1.17363 0.82048 1.06733 0.94252 1.91566 1.43213 1.94372 1.80281 1.17243 0.91541 0.94222 0.83713 1.91642 1.96717 1.76283 1.42878 1.22838 1.01124 0.99290 0.80294 1.22425 0.96302 0.98057 0.95468 0.89073 1.20738 0.96597 0.92853 0.86580 1.42361 1.78018 1.05608 1.11744 1.19248 1.34851 0.91341 0.91690 0.91159 1.24693 1.02137 0.95464 0.98321 1.69638 1.53825 1.04099 1.30587 0.86162 0.78205 0.78698 0.83399 1.20569 1.21812 1.21825 0.92356 0.92564 0.91677 0.90621 0.89678 0.80175 0.81638 0.90536 0.88211 0.96104 0.95705 0.78348 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.17 37.16 0.34 -0.91 16 2 C -0.10 -1.08 3.22 -88.65 -0.29 -1.37 16 3 H 0.09 1.00 7.86 -51.93 -0.41 0.59 16 4 C 0.11 1.21 6.57 -2.04 -0.01 1.20 16 5 N -0.61 -7.80 3.29 -170.87 -0.56 -8.37 16 6 C 0.58 8.61 7.80 -12.45 -0.10 8.52 16 7 O -0.53 -9.35 15.59 5.29 0.08 -9.26 16 8 C -0.15 -2.07 5.86 -104.92 -0.61 -2.68 16 9 C -0.05 -0.61 8.32 -39.20 -0.33 -0.94 16 10 C -0.14 -1.47 10.00 -39.58 -0.40 -1.87 16 11 C 0.12 1.49 7.31 -39.24 -0.29 1.20 16 12 F -0.11 -1.42 17.17 2.25 0.04 -1.38 16 13 C 0.02 0.23 7.30 -39.37 -0.29 -0.06 16 14 F -0.12 -1.59 17.09 2.25 0.04 -1.55 16 15 C 0.15 2.16 7.28 -38.92 -0.28 1.88 16 16 F -0.10 -1.53 15.52 2.25 0.03 -1.49 16 17 C 0.09 1.06 4.38 -2.98 -0.01 1.05 16 18 C -0.10 -1.33 2.62 -89.25 -0.23 -1.56 16 19 H 0.09 1.16 7.85 -51.93 -0.41 0.75 16 20 C 0.16 2.76 5.32 -4.05 -0.02 2.74 16 21 N -0.73 -16.18 5.38 -59.91 -0.32 -16.50 16 22 C -0.24 -6.18 9.99 -15.06 -0.15 -6.33 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 24 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 25 N -0.93 -25.84 13.06 55.49 0.72 -25.11 16 26 Si 0.90 21.25 29.55 -169.99 -5.02 16.22 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.71 8.02 -51.93 -0.42 0.30 16 34 H 0.08 0.98 7.80 -51.93 -0.41 0.57 16 35 H 0.18 1.91 3.54 -52.49 -0.19 1.72 16 36 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.08 0.80 7.35 -51.93 -0.38 0.42 16 38 H 0.10 1.38 5.53 -51.93 -0.29 1.09 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.03 0.45 8.14 -51.92 -0.42 0.02 16 41 H 0.38 8.65 7.56 -40.82 -0.31 8.34 16 42 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 358.97 15.07 5.41 5.41 Total: -1.00 -30.28 358.97 -7.22 -37.51 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -4.88 Total: 4.03 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -2.76 Total: 0.50 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.16 Total: -49.98 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.11 Total: -4.42 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.28 -7.22 -37.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754821219.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.941 kcal (2) G-P(sol) polarization free energy of solvation -30.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds