Wall clock time and date at job start Wed Apr 1 2020 02:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.79964 * 2 1 4 4 C 1.55114 * 110.82865 * 123.33359 * 2 1 3 5 5 N 1.48114 * 103.31440 * 155.60185 * 4 2 1 6 6 C 1.34774 * 127.03735 * 140.80118 * 5 4 2 7 7 O 1.21588 * 119.99623 * 353.25148 * 6 5 4 8 8 C 1.47574 * 120.00133 * 173.25567 * 6 5 4 9 9 C 1.39734 * 120.13156 * 349.53709 * 8 6 5 10 10 C 1.37759 * 119.94380 * 179.74705 * 9 8 6 11 11 C 1.38721 * 120.21178 * 0.52905 * 10 9 8 12 12 F 1.35100 * 119.86684 * 179.69881 * 11 10 9 13 13 C 1.38669 * 120.26627 * 359.72785 * 11 10 9 14 14 F 1.35097 * 119.97318 * 179.97438 * 13 11 10 15 15 C 1.38384 * 120.04994 * 0.02562 * 13 11 10 16 16 F 1.35099 * 120.10269 * 179.97438 * 15 13 11 17 17 C 1.47488 * 105.93071 * 320.76331 * 5 4 2 18 18 C 1.54005 * 107.08435 * 25.44892 * 17 5 4 19 19 H 1.09003 * 110.32722 * 239.70174 * 18 17 5 20 20 C 1.52992 * 110.32682 * 117.58613 * 18 17 5 21 21 N 1.46500 * 109.47272 * 67.83803 * 20 18 17 22 22 C 1.36942 * 120.00176 * 180.27678 * 21 20 18 23 23 H 1.08000 * 119.99609 * 359.72180 * 22 21 20 24 24 C 1.38809 * 120.00207 * 179.72470 * 22 21 20 25 25 N 1.31618 * 120.00067 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00074 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47259 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.46994 * 119.99815 * 26 24 22 29 29 H 1.48500 * 109.47197 * 239.99785 * 26 24 22 30 30 H 1.09000 * 109.47485 * 183.29244 * 1 2 3 31 31 H 1.09000 * 109.47325 * 303.29286 * 1 2 3 32 32 H 1.08998 * 109.47099 * 63.28831 * 1 2 3 33 33 H 1.09003 * 110.58556 * 37.16245 * 4 2 1 34 34 H 1.09000 * 110.82183 * 274.15171 * 4 2 1 35 35 H 1.08002 * 120.03186 * 359.97438 * 9 8 6 36 36 H 1.08000 * 119.89767 * 180.27926 * 10 9 8 37 37 H 1.08996 * 109.91303 * 266.08693 * 17 5 4 38 38 H 1.08998 * 109.91223 * 144.80909 * 17 5 4 39 39 H 1.09000 * 109.47570 * 307.83591 * 20 18 17 40 40 H 1.09011 * 109.47136 * 187.83540 * 20 18 17 41 41 H 0.96995 * 120.00331 * 359.97438 * 21 20 18 42 42 H 0.96999 * 120.00253 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0190 0.0000 4 6 2.0816 -0.7967 1.2113 5 7 3.4297 -1.2128 0.7605 6 6 4.5561 -1.2533 1.4993 7 8 4.5566 -0.8103 2.6317 8 6 5.7889 -1.8350 0.9340 9 6 5.7434 -2.5381 -0.2727 10 6 6.8974 -3.0751 -0.7996 11 6 8.1039 -2.9297 -0.1304 12 9 9.2303 -3.4644 -0.6504 13 6 8.1581 -2.2383 1.0704 14 9 9.3361 -2.1008 1.7173 15 6 7.0064 -1.6901 1.6070 16 9 7.0580 -1.0167 2.7771 17 6 3.2870 -1.5748 -0.6621 18 6 2.0775 -0.7937 -1.2087 19 1 1.3203 -1.4821 -1.5839 20 6 2.5199 0.1638 -2.3169 21 7 2.9551 -0.6076 -3.4838 22 6 3.4031 0.0398 -4.6043 23 1 3.4313 1.1192 -4.6294 24 6 3.8208 -0.6912 -5.7079 25 7 3.7869 -2.0066 -5.6773 26 14 4.4312 0.1919 -7.2366 27 1 4.3700 1.6595 -7.0182 28 1 5.8338 -0.2097 -7.5135 29 1 3.5745 -0.1720 -8.3938 30 1 -0.3634 -1.0259 0.0590 31 1 -0.3634 0.5641 0.8590 32 1 -0.3633 0.4619 -0.9180 33 1 1.4578 -1.6674 1.4134 34 1 2.1504 -0.1611 2.0941 35 1 4.8050 -2.6572 -0.7939 36 1 6.8622 -3.6144 -1.7346 37 1 3.1105 -2.6462 -0.7567 38 1 4.1876 -1.2946 -1.2086 39 1 3.3463 0.7776 -1.9584 40 1 1.6849 0.8063 -2.5968 41 1 2.9302 -1.5769 -3.4613 42 1 4.0791 -2.5174 -6.4483 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754821219.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:17 Heat of formation + Delta-G solvation = -126.262439 kcal Electronic energy + Delta-G solvation = -30250.227380 eV Core-core repulsion = 25588.264483 eV Total energy + Delta-G solvation = -4661.962897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.99945 -50.40781 -49.67991 -41.73315 -39.72661 -38.92868 -36.36667 -34.45590 -33.26309 -31.96707 -31.86125 -30.53082 -27.67284 -27.22161 -25.50974 -24.65628 -24.35432 -22.53590 -21.28298 -21.15619 -19.46115 -19.36218 -19.04667 -18.93257 -18.06128 -17.53810 -17.31834 -16.96177 -16.73404 -16.63586 -16.50462 -16.15879 -15.83337 -15.77558 -15.61441 -15.26556 -15.13640 -15.01865 -14.56278 -14.09640 -13.97159 -13.74064 -13.48596 -13.23832 -13.18176 -13.02616 -12.96965 -12.78323 -12.73045 -12.46239 -12.07614 -11.88675 -11.72039 -11.45524 -11.32158 -11.25155 -10.87977 -10.28237 -10.21670 -9.78896 -8.91417 -7.89718 -5.15747 -0.92277 -0.52283 1.30508 1.50565 1.53796 1.59746 1.60552 2.09753 2.14430 2.60276 2.86545 2.88604 2.99590 3.24091 3.40590 3.44718 3.54583 3.65289 3.78287 4.05229 4.20399 4.25475 4.28081 4.42652 4.53836 4.55500 4.60341 4.61003 4.71177 4.74615 4.77219 4.81050 4.90829 5.05319 5.11158 5.23289 5.29328 5.30159 5.39200 5.56087 5.60463 6.26820 6.34083 6.83286 7.42858 8.15656 8.42556 9.32909 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.008189 B = 0.004306 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3418.333888 B = 6501.093376 C = 9332.303205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 H 0.074 0.926 4 C 0.109 3.891 5 N -0.607 5.607 6 C 0.577 3.423 7 O -0.565 6.565 8 C -0.160 4.160 9 C -0.044 4.044 10 C -0.122 4.122 11 C 0.128 3.872 12 F -0.115 7.115 13 C 0.013 3.987 14 F -0.122 7.122 15 C 0.139 3.861 16 F -0.113 7.113 17 C 0.087 3.913 18 C -0.094 4.094 19 H 0.102 0.898 20 C 0.162 3.838 21 N -0.738 5.738 22 C -0.241 4.241 23 H 0.067 0.933 24 C -0.060 4.060 25 N -0.958 5.958 26 Si 0.956 3.044 27 H -0.274 1.274 28 H -0.295 1.295 29 H -0.295 1.295 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.193 0.807 36 H 0.189 0.811 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.011 0.989 40 H 0.023 0.977 41 H 0.381 0.619 42 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.024 -3.498 13.092 13.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 H 0.093 0.907 4 C -0.012 4.012 5 N -0.338 5.338 6 C 0.367 3.633 7 O -0.445 6.445 8 C -0.165 4.165 9 C -0.061 4.061 10 C -0.141 4.141 11 C 0.107 3.893 12 F -0.093 7.093 13 C -0.008 4.008 14 F -0.101 7.101 15 C 0.117 3.883 16 F -0.091 7.091 17 C -0.035 4.035 18 C -0.113 4.113 19 H 0.120 0.880 20 C 0.035 3.965 21 N -0.381 5.381 22 C -0.373 4.373 23 H 0.085 0.915 24 C -0.254 4.254 25 N -0.608 5.608 26 Si 0.787 3.213 27 H -0.199 1.199 28 H -0.222 1.222 29 H -0.223 1.223 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.097 0.903 35 H 0.210 0.790 36 H 0.206 0.794 37 H 0.123 0.877 38 H 0.103 0.897 39 H 0.029 0.971 40 H 0.041 0.959 41 H 0.214 0.786 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.822 -3.087 13.706 14.073 hybrid contribution 1.256 0.350 -0.720 1.489 sum 0.434 -2.737 12.986 13.279 Atomic orbital electron populations 1.21699 0.91808 1.03182 1.02569 1.22260 0.97582 0.98831 0.92400 0.90727 1.22812 0.80839 0.99790 0.97734 1.48623 1.08414 1.64675 1.12086 1.17488 0.82330 0.78922 0.84577 1.90825 1.84694 1.49085 1.19933 1.19903 0.92045 1.06000 0.98504 1.22465 1.01814 0.90650 0.91200 1.21523 0.88695 1.01504 1.02330 1.17716 0.84523 0.96012 0.91055 1.91590 1.49058 1.83182 1.85512 1.17427 0.81593 1.07108 0.94672 1.91544 1.43523 1.94483 1.80541 1.17410 0.92241 0.95012 0.83632 1.91594 1.96832 1.76836 1.43863 1.22882 1.00190 1.00800 0.79631 1.22308 0.96777 0.97574 0.94671 0.87997 1.20811 0.95890 0.93387 0.86395 1.42462 1.77775 1.05730 1.12159 1.19524 1.33614 0.91425 0.92752 0.91494 1.25271 1.03366 0.96117 1.00632 1.69734 1.55221 1.04935 1.30957 0.85332 0.77233 0.78132 0.80601 1.19886 1.22193 1.22282 0.91014 0.91199 0.92327 0.88163 0.90272 0.79008 0.79380 0.87734 0.89667 0.97065 0.95931 0.78643 0.93977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.17 71.98 0.66 -1.38 16 2 C -0.09 -1.77 3.22 -9.52 -0.03 -1.80 16 3 H 0.07 1.64 7.86 -2.38 -0.02 1.62 16 4 C 0.11 2.16 6.57 86.79 0.57 2.73 16 5 N -0.61 -14.49 3.29 -812.76 -2.68 -17.17 16 6 C 0.58 16.79 7.80 86.71 0.68 17.47 16 7 O -0.56 -20.20 15.59 -3.99 -0.06 -20.26 16 8 C -0.16 -4.19 5.86 -20.06 -0.12 -4.31 16 9 C -0.04 -0.92 8.32 22.52 0.19 -0.73 16 10 C -0.12 -2.39 10.00 22.27 0.22 -2.17 16 11 C 0.13 2.91 7.31 22.49 0.16 3.07 16 12 F -0.12 -2.70 17.17 44.97 0.77 -1.93 16 13 C 0.01 0.34 7.30 22.41 0.16 0.51 16 14 F -0.12 -3.38 17.09 44.97 0.77 -2.61 16 15 C 0.14 3.91 7.28 22.70 0.17 4.08 16 16 F -0.11 -3.68 15.52 44.97 0.70 -2.98 16 17 C 0.09 1.92 4.38 86.53 0.38 2.30 16 18 C -0.09 -2.21 2.62 -9.91 -0.03 -2.24 16 19 H 0.10 2.26 7.85 -2.39 -0.02 2.24 16 20 C 0.16 5.38 5.32 86.38 0.46 5.84 16 21 N -0.74 -31.66 5.38 -343.45 -1.85 -33.51 16 22 C -0.24 -12.17 9.99 84.03 0.84 -11.33 16 23 H 0.07 3.36 7.83 -2.91 -0.02 3.34 16 24 C -0.06 -3.17 5.50 84.86 0.47 -2.70 16 25 N -0.96 -52.31 13.06 21.65 0.28 -52.03 16 26 Si 0.96 43.15 29.55 68.60 2.03 45.18 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 29 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 30 H 0.07 0.92 8.10 -2.39 -0.02 0.90 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.10 1.54 8.02 -2.39 -0.02 1.52 16 34 H 0.08 1.71 7.80 -2.39 -0.02 1.69 16 35 H 0.19 3.59 3.54 -2.91 -0.01 3.58 16 36 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 37 H 0.10 1.81 7.35 -2.39 -0.02 1.79 16 38 H 0.09 2.20 5.53 -2.39 -0.01 2.19 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.38 16.64 7.56 -92.71 -0.70 15.94 16 42 H 0.25 13.44 8.31 -92.71 -0.77 12.67 16 Total: -1.00 -64.36 358.97 5.13 -59.23 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.39 Total: 16.74 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 4.78 Total: 9.34 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -4.24 Total: -102.70 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.06 Total: -20.26 kcal Atomic # 9 Polarization: -9.75 SS G_CDS: 2.24 Total: -7.52 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -64.36 5.13 -59.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754821219.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.030 kcal (2) G-P(sol) polarization free energy of solvation -64.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds