Wall clock time and date at job start Wed Apr 1 2020 01:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47306 * 2 1 4 4 H 1.09002 * 109.46892 * 305.00508 * 3 2 1 5 5 C 1.52996 * 109.47530 * 184.99714 * 3 2 1 6 6 N 1.46498 * 109.47059 * 184.99929 * 5 3 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 3 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 S 1.81000 * 109.47389 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99715 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00516 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99710 * 179.97438 * 11 10 9 14 14 N 1.31626 * 120.00053 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00174 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47356 * 89.99148 * 15 13 11 17 17 H 1.48497 * 109.47342 * 209.99750 * 15 13 11 18 18 H 1.48505 * 109.46847 * 329.99403 * 15 13 11 19 19 N 1.46506 * 109.46609 * 64.99913 * 3 2 1 20 20 C 1.34782 * 119.99726 * 274.99704 * 19 3 2 21 21 O 1.21278 * 120.00302 * 0.02562 * 20 19 3 22 22 C 1.50704 * 119.99703 * 179.97438 * 20 19 3 23 23 N 1.46498 * 109.47155 * 180.02562 * 22 20 19 24 24 N 1.28880 * 125.44808 * 90.00048 * 23 22 20 25 25 C 1.31035 * 107.91779 * 180.02562 * 24 23 22 26 26 N 1.33316 * 106.89944 * 0.02562 * 25 24 23 27 27 N 1.28777 * 125.44971 * 269.70253 * 23 22 20 28 28 H 1.08994 * 109.47382 * 299.99589 * 1 2 3 29 29 H 1.09003 * 109.47243 * 60.00250 * 1 2 3 30 30 H 1.09001 * 109.46772 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47619 * 240.00089 * 2 1 3 32 32 H 1.09003 * 109.47243 * 119.99750 * 2 1 3 33 33 H 1.09004 * 109.47066 * 65.00196 * 5 3 2 34 34 H 1.08994 * 109.46974 * 305.00344 * 5 3 2 35 35 H 0.97001 * 120.00384 * 0.02562 * 6 5 3 36 36 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 37 37 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 38 38 H 0.97000 * 120.00636 * 180.02562 * 14 13 11 39 39 H 0.97000 * 120.00390 * 95.00648 * 19 3 2 40 40 H 1.09000 * 109.47086 * 300.00860 * 22 20 19 41 41 H 1.09006 * 109.46761 * 60.00688 * 22 20 19 42 42 H 1.08005 * 126.55071 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1256 6 7 4.0629 2.8169 -0.0059 7 6 5.3860 3.0624 -0.0806 8 8 6.1639 2.1478 -0.2521 9 6 5.8991 4.4735 0.0488 10 16 7.7034 4.4751 -0.0940 11 6 8.0232 6.1982 0.0876 12 1 7.2044 6.8868 0.2356 13 6 9.3275 6.6706 0.0415 14 7 9.5665 7.9578 0.1776 15 14 10.7438 5.4797 -0.2138 16 1 11.0096 5.3308 -1.6672 17 1 11.9587 6.0034 0.4605 18 1 10.3889 4.1578 0.3624 19 7 1.6524 2.0974 1.2519 20 6 0.4350 2.6644 1.3669 21 8 -0.3397 2.6320 0.4344 22 6 0.0361 3.3376 2.6549 23 7 -1.3228 3.8698 2.5272 24 7 -2.4053 3.2329 2.8163 25 6 -3.4180 4.0283 2.5737 26 7 -2.9103 5.1761 2.1242 27 7 -1.6265 5.0508 2.1132 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8499 1.0378 -1.0960 34 1 3.9953 0.8312 0.6659 35 1 3.4409 3.5484 0.1316 36 1 5.4717 5.0895 -0.7424 37 1 5.6107 4.8774 1.0193 38 1 10.4780 8.2881 0.1451 39 1 2.2718 2.1232 1.9979 40 1 0.0671 2.6128 3.4685 41 1 0.7275 4.1529 2.8680 42 1 -4.4642 3.7979 2.7114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759299566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:58 Heat of formation + Delta-G solvation = 59.543204 kcal Electronic energy + Delta-G solvation = -26690.507436 eV Core-core repulsion = 22642.654775 eV Total energy + Delta-G solvation = -4047.852660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.126 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.69072 -40.84257 -39.38147 -37.12224 -35.35956 -34.09637 -33.49651 -33.05228 -32.48657 -30.45391 -29.68414 -27.98433 -25.66783 -24.33182 -24.07711 -23.55167 -21.90344 -21.20883 -20.52869 -18.70310 -18.44361 -17.91140 -17.05896 -16.77865 -16.65249 -16.36757 -15.94081 -15.61068 -15.25950 -15.00721 -14.69359 -14.35511 -14.08275 -13.88253 -13.86450 -13.62049 -13.21302 -13.16611 -12.84358 -12.58434 -12.33952 -12.06525 -11.97424 -11.62128 -11.53343 -11.33048 -11.31656 -11.29074 -11.05445 -11.03062 -10.67407 -10.40190 -9.92224 -9.77566 -9.63315 -9.20758 -9.04621 -8.57182 -6.98424 -6.33401 -4.06131 0.78035 1.30133 1.79037 1.91336 2.41677 2.65964 2.82519 3.19356 3.29449 3.45461 3.55491 3.61507 3.79846 3.99434 4.13737 4.14287 4.28221 4.45338 4.50486 4.61470 4.66729 4.93414 5.02947 5.05586 5.15129 5.29172 5.32629 5.35632 5.35869 5.52909 5.58405 5.63097 5.64292 5.66559 5.85573 5.92078 6.01351 6.29774 6.68974 7.40040 7.41015 7.89433 7.99335 8.32131 8.37150 9.12413 10.75760 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.014382 B = 0.002229 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.463752 B =12560.795219 C =14244.113682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.136 3.864 4 H 0.100 0.900 5 C 0.113 3.887 6 N -0.739 5.739 7 C 0.532 3.468 8 O -0.516 6.516 9 C -0.125 4.125 10 S -0.141 6.141 11 C -0.523 4.523 12 H 0.088 0.912 13 C 0.096 3.904 14 N -0.879 5.879 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.236 1.236 19 N -0.716 5.716 20 C 0.506 3.494 21 O -0.509 6.509 22 C 0.108 3.892 23 N -0.128 5.128 24 N -0.303 5.303 25 C 0.146 3.854 26 N -0.283 5.283 27 N -0.046 5.046 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.400 0.600 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.408 0.592 40 H 0.147 0.853 41 H 0.151 0.849 42 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.277 -14.831 6.649 28.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.032 3.968 4 H 0.118 0.882 5 C -0.011 4.011 6 N -0.395 5.395 7 C 0.318 3.682 8 O -0.390 6.390 9 C -0.276 4.276 10 S 0.086 5.914 11 C -0.670 4.670 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.515 5.515 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.160 1.160 19 N -0.370 5.370 20 C 0.288 3.712 21 O -0.383 6.383 22 C -0.017 4.017 23 N -0.039 5.039 24 N -0.152 5.152 25 C -0.157 4.157 26 N -0.154 5.154 27 N -0.040 5.040 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.234 0.766 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.243 0.757 40 H 0.164 0.836 41 H 0.168 0.832 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -21.852 -15.902 5.526 27.584 hybrid contribution -0.648 0.856 0.653 1.256 sum -22.500 -15.046 6.179 27.763 Atomic orbital electron populations 1.21782 0.94493 1.00990 1.02847 1.21902 0.97186 0.94772 1.03243 1.21438 0.93910 0.94522 0.86936 0.88231 1.21610 0.91055 0.84705 1.03768 1.45961 1.07776 1.08909 1.76818 1.20314 0.81432 0.91078 0.75410 1.90717 1.55464 1.46109 1.46739 1.23282 1.03181 0.95324 1.05779 1.84797 0.97691 1.13117 1.95843 1.22302 0.97223 0.89813 1.57679 0.89353 1.24721 0.98295 0.95053 0.93263 1.69933 1.21483 1.12564 1.47558 0.86733 0.82148 0.83039 0.79902 1.19192 1.19914 1.15959 1.45922 1.15913 1.57544 1.17616 1.20171 0.82716 0.79279 0.88997 1.90856 1.50585 1.57423 1.39450 1.22011 0.77367 1.02860 0.99473 1.49461 1.07534 1.07694 1.39224 1.74696 0.92985 1.25778 1.21781 1.27361 1.01128 0.87179 1.00042 1.75921 0.98939 1.22805 1.17738 1.79060 1.09559 1.02258 1.13106 0.92788 0.92149 0.93164 0.90247 0.91168 0.89657 0.90613 0.76577 0.88444 0.88437 0.91884 0.75681 0.83568 0.83161 0.74773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.51 37.15 0.32 -0.77 16 2 C -0.13 -0.77 5.61 -26.73 -0.15 -0.92 16 3 C 0.14 0.84 2.42 -67.93 -0.16 0.68 16 4 H 0.10 0.79 7.58 -51.93 -0.39 0.40 16 5 C 0.11 0.90 5.23 -4.04 -0.02 0.88 16 6 N -0.74 -7.41 5.39 -60.30 -0.32 -7.73 16 7 C 0.53 8.28 7.85 -10.98 -0.09 8.19 16 8 O -0.52 -10.08 15.86 5.55 0.09 -9.99 16 9 C -0.13 -2.22 6.16 36.01 0.22 -2.00 16 10 S -0.14 -3.41 18.55 -107.50 -1.99 -5.41 16 11 C -0.52 -14.64 10.04 30.94 0.31 -14.33 16 12 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 13 C 0.10 2.74 5.50 -17.43 -0.10 2.64 16 14 N -0.88 -26.09 13.97 55.49 0.78 -25.32 16 15 Si 0.86 21.29 27.74 -169.99 -4.72 16.58 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.24 -5.81 6.74 56.52 0.38 -5.42 16 19 N -0.72 -3.26 4.47 -53.80 -0.24 -3.50 16 20 C 0.51 3.31 6.47 -10.98 -0.07 3.24 16 21 O -0.51 -5.58 13.57 5.56 0.08 -5.50 16 22 C 0.11 0.47 7.08 -5.19 -0.04 0.43 16 23 N -0.13 -1.12 3.49 -11.72 -0.04 -1.16 16 24 N -0.30 -2.75 12.13 29.34 0.36 -2.40 16 25 C 0.15 1.21 13.26 -91.59 -1.21 0.00 16 26 N -0.28 -3.16 12.50 29.33 0.37 -2.80 16 27 N -0.05 -0.51 13.25 60.35 0.80 0.29 16 28 H 0.05 0.46 5.64 -51.93 -0.29 0.16 16 29 H 0.06 0.56 7.85 -51.93 -0.41 0.15 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.40 3.18 8.14 -40.82 -0.33 2.85 16 36 H 0.10 1.65 8.14 -51.92 -0.42 1.22 16 37 H 0.10 1.57 8.14 -51.92 -0.42 1.15 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.41 0.92 8.60 -40.82 -0.35 0.57 16 40 H 0.15 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.15 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.24 0.85 8.06 -52.48 -0.42 0.42 16 LS Contribution 375.48 15.07 5.66 5.66 Total: -1.00 -39.07 375.48 -5.77 -44.84 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -5.58 Total: -1.60 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -0.99 Total: -1.95 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 1.69 Total: -42.61 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.16 Total: -15.49 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.72 Total: 16.58 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -1.99 Total: -5.41 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -39.07 -5.77 -44.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759299566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.381 kcal (2) G-P(sol) polarization free energy of solvation -39.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds